F251504

General Info

Members Datasets Scaffolds Average Seq Length
167 130 120 465

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2515154129|2515720954
Length 495
Sequence TGAHRDHPGDGAVGRPWLAAGMALVTGGPVRAWGGSPAHRFYSVVVFVLLASLDNVAIGLVPPLYGSIADALDVSRRLLGLVTAANFLVSAVAAVGWAYVGDRTNRKPLLMVGTLIWAFGTGGSAVAGSYPTFLAAQVVGAVGLGVVGSVGFSVVTDLISPRRRGLVMSFWGLSQGVGTLAGTLVGGLLGAADWRRPFLVLTVVGLGATAAYLFTFDIQRGQSEPELADRLAGGAEYDHRISRADLPRILGRPTNRWLILQGLTAQAAFGSLVWLPVLFAERAEAQGYSAATAVVVGSVFATLFQLGGVFSIVGGLVGDALQRRTPSGRAMVAAVGILAALPFYLVLFFVPIRIDVPDGAGSGTIVRAVLASVLTEPTVGLSLLTALLALALTSANSPNWFALIADVNPPEHRGTVYSLGNLVNGVGRATGNGLVGVVFHGLRAAFPPPLNYAVGLAAFQLFFVPTGIMYWLAARSSPRDIAAVRLLLRARARRM

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
3 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
4 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
5 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
6 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
7 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
8 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
9 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
10 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
11 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
12 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
13 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
14 2831935698 Jishengella sp. AZ1-13 Isolate Unclassified
15 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
16 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
17 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
18 2855683550 Micromonospora sp. RP3T Isolate Unclassified
19 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
20 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
21 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
22 2858868258 Micromonospora sp. MH33 Isolate Unclassified
23 2858882152 Micromonospora noduli MED15 Isolate Nodule
24 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
25 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
26 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
27 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
28 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
29 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
30 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
31 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
32 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
33 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
34 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
35 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
36 2902582711 Micromonospora sp. AP08 Isolate Unclassified
37 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
38 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
39 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
40 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
41 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
42 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
43 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
44 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
45 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
46 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
47 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
48 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
49 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
50 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
51 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
52 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
53 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
54 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
55 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
56 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
57 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
58 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
59 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
60 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
61 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
62 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
63 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
64 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
65 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
66 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
67 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
68 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
69 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
70 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
71 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
72 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
73 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
74 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
89 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
91 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
94 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
95 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
96 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
97 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
98 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
99 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
100 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
101 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
102 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
103 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
104 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
105 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
106 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
107 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
111 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
112 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
113 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
119 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
120 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
121 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
122 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
123 649633069 Micromonospora sp. L5 Isolate Unclassified
124 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
125 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
126 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
127 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
128 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
129 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
130 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 71.26
Metatranscriptomes 0.6
Isolates 28.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.6
Nodule 3.59
Rhizoplane 5.99
Rhizosphere 64.67
Stem 0
Stem Tuber 0
Unclassified 25.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10181821 3300005327 Bacteria 1769
2 Ga0070683_100020491 3300005329 Bacteria 5883
3 Ga0070683_100192704 3300005329 Bacteria 1936
4 Ga0068869_100001476 3300005334 Bacteria 13922
5 Ga0070682_100022117 3300005337 Bacteria 3762
6 Ga0068868_100071253 3300005338 Bacteria 2772
7 Ga0070689_100139935 3300005340 Bacteria 1946
8 Ga0070687_100039417 3300005343 Bacteria 2374
9 Ga0070661_100007109 3300005344 Bacteria 7722
10 Ga0070692_10004627 3300005345 Bacteria 5763
11 Ga0070675_100001949 3300005354 Bacteria 15285
12 Ga0070659_100013672 3300005366 Bacteria 6049
13 Ga0070667_100057530 3300005367 Bacteria 3286
14 Ga0070713_100135218 3300005436 Bacteria 2178
15 Ga0070663_100051786 3300005455 Bacteria 2926
16 Ga0070679_100014722 3300005530 Bacteria 7518
17 Ga0070684_100009738 3300005535 Bacteria 7584
18 Ga0070684_100022082 3300005535 Bacteria 5303
19 Ga0070672_100047790 3300005543 Bacteria 3322
20 Ga0070664_100001406 3300005564 Bacteria 19218
21 Ga0068864_100064658 3300005618 Bacteria 3173
22 Ga0068864_100065909 3300005618 Bacteria 3142
23 Ga0068863_100033597 3300005841 Bacteria 4886
24 Ga0068862_100161174 3300005844 Bacteria 2002
25 Ga0068862_100170405 3300005844 Bacteria 1949
26 Ga0081540_1015981 3300005983 Bacteria 4727
27 Ga0081540_1030972 3300005983 Bacteria 2952
28 Ga0081539_10000116 3300005985 Bacteria 186861
29 Ga0081539_10000782 3300005985 Bacteria 61987
30 Ga0081539_10001066 3300005985 Bacteria 50181
31 Ga0081539_10003233 3300005985 Bacteria 20534
32 Ga0081539_10006176 3300005985 Bacteria 11655
33 Ga0075428_100000442 3300006844 Bacteria 41325
34 Ga0075428_100039075 3300006844 Bacteria 5223
35 Ga0075428_100210460 3300006844 Bacteria 2101
36 Ga0075430_100009959 3300006846 Bacteria 8040
37 Ga0075431_100030946 3300006847 Bacteria 5512
38 Ga0075431_100072527 3300006847 Bacteria 3553
39 Ga0075431_100085482 3300006847 Bacteria 3256
40 Ga0075429_100037513 3300006880 Bacteria 4219
41 Ga0075429_100092132 3300006880 Bacteria 2644
42 Ga0111539_10014311 3300009094 Bacteria 9906
43 Ga0105245_10006364 3300009098 Bacteria 10393
44 Ga0114129_10000214 3300009147 Bacteria 64476
45 Ga0114129_10009335 3300009147 Bacteria 13991
46 Ga0114129_10038500 3300009147 Bacteria 6744
47 Ga0114129_10175500 3300009147 Bacteria 2919
48 Ga0163162_10228245 3300013306 Bacteria 1992
49 Ga0157375_10271926 3300013308 Bacteria 1857
50 Ga0163163_10004448 3300014325 Bacteria 11954
51 Ga0206353_11972983 3300020082 Bacteria 5439
52 Ga0207663_10057559 3300025916 Bacteria 2450
53 Ga0207660_10056034 3300025917 Bacteria 2819
54 Ga0207659_10001952 3300025926 Bacteria 12248
55 Ga0207687_10016153 3300025927 Bacteria 4901
56 Ga0207669_10026013 3300025937 Bacteria 3175
57 Ga0207665_10120239 3300025939 Bacteria 1855
58 Ga0207689_10026683 3300025942 Bacteria 4838
59 Ga0207661_10026912 3300025944 Bacteria 4389
60 Ga0207661_10041122 3300025944 Bacteria 3638
61 Ga0207668_10006034 3300025972 Bacteria 7144
62 Ga0207677_10052772 3300026023 Bacteria 2764
63 Ga0207678_10033076 3300026067 Bacteria 4505
64 Ga0207641_10054201 3300026088 Bacteria 3402
65 Ga0207676_10018896 3300026095 Bacteria 5018
66 Ga0207674_10056670 3300026116 Bacteria 3977
67 Ga0207428_10054096 3300027907 Bacteria 3198
68 Ga0268266_10111699 3300028379 Bacteria 2422
69 Ga0307515_10000217 3300028794 Bacteria 142129
70 Ga0307515_10002913 3300028794 Bacteria 36350
71 Ga0307515_10092905 3300028794 Bacteria 3748
72 Ga0307512_10013093 3300030522 Bacteria 7793
73 Ga0307513_10001699 3300031456 Bacteria 31474
74 Ga0307513_10040121 3300031456 Bacteria 5179
75 Ga0307513_10075257 3300031456 Bacteria 3507
76 Ga0307509_10110327 3300031507 Bacteria 2757
77 Ga0307509_10117554 3300031507 Bacteria 2645
78 Ga0307508_10004518 3300031616 Bacteria 13567
79 Ga0307508_10007784 3300031616 Bacteria 9953
80 Ga0307516_10027344 3300031730 Bacteria 5783
81 Ga0307516_10034105 3300031730 Bacteria 5118
82 Ga0307413_10034993 3300031824 Bacteria 2877
83 Ga0307407_10014171 3300031903 Bacteria 3895
84 Ga0307409_100028938 3300031995 Bacteria 3956
85 Ga0307409_100081203 3300031995 Bacteria 2620
86 Ga0307409_100202345 3300031995 Bacteria 1778
87 Ga0307415_100006980 3300032126 Bacteria 6138
88 Ga0307507_10015089 3300033179 Bacteria 9129
89 Ga0373951_0000296 3300035091 Bacteria 15806
90 Ga0373942_0000023 3300035207 Bacteria 30003
91 Ga0373962_0006268 3300035242 Bacteria 2878
92 Ga0395899_0003841 3300037312 Bacteria 11844
93 Ga0395900_0036700 3300037418 Bacteria 5053
94 Ga0395898_0001963 3300037466 Bacteria 25901
95 Ga0451853_0622547 3300041512 Bacteria 5549
96 Ga0496104_0072887 3300048907 Bacteria 3266
97 Ga0496105_0014396 3300048908 Bacteria 6295
98 Ga0496108_0000040 3300048911 Bacteria 147522
99 Ga0496108_0149568 3300048911 Bacteria 2015
100 Ga0496109_0021423 3300048912 Bacteria 5714
101 Ga0496110_0029340 3300048913 Bacteria 4733
102 Ga0496111_0040659 3300048914 Bacteria 3335
103 Ga0496112_0062534 3300048915 Bacteria 3672
104 Ga0496112_0134642 3300048915 Bacteria 2441
105 Ga0496113_0031489 3300048916 Bacteria 3849
106 Ga0501047_0020558 3300049581 Bacteria 6338
107 nmdc:mga05p37_100151_c1 3300050507 Bacteria 3569
108 nmdc:mga05p37_1246_c1 3300050507 Bacteria 29559
109 nmdc:mga09592_135032_c1 3300050508 Bacteria 2125
110 nmdc:mga09592_35_c1 3300050508 Bacteria 73534
111 nmdc:mga0qj67_1474_c1 3300050509 Bacteria 16512
112 nmdc:mga0qj67_26804_c1 3300050509 Bacteria 4463
113 nmdc:mga0qj67_33_c2 3300050509 Bacteria 85192
114 nmdc:mga0qj67_89636_c1 3300050509 Bacteria 2470
115 nmdc:mga06r32_146498_c1 3300050510 Bacteria 2338
116 nmdc:mga06r32_170421_c1 3300050510 Bacteria 2161
117 nmdc:mga06r32_1_c3 3300050510 Bacteria 67549
118 nmdc:mga06r32_3347_c1 3300050510 Bacteria 14356
119 nmdc:mga08y16_4369_c1 3300050511 Bacteria 14769
120 Ga0500594_0004369 3300053118 Bacteria 3115

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025942 Ga0207689_10026683 Ga0207689_100266834 411
2 3300006847 Ga0075431_100072527 Ga0075431_1000725272 421
3 3300050510 nmdc:mga06r32_3347_c1 nmdc:mga06r32_3347_c1_12477_13877 421
4 3300005985 Ga0081539_10003233 Ga0081539_1000323321 426
5 3300006844 Ga0075428_100039075 Ga0075428_1000390752 426
6 3300037418 Ga0395900_0036700 Ga0395900_0036700_2061_3437 426
7 3300050507 nmdc:mga05p37_100151_c1 nmdc:mga05p37_100151_c1_1627_3042 426
8 3300050508 nmdc:mga09592_135032_c1 nmdc:mga09592_135032_c1_19_1434 426
9 3300050509 nmdc:mga0qj67_26804_c1 nmdc:mga0qj67_26804_c1_1341_2756 426
10 3300050510 nmdc:mga06r32_170421_c1 nmdc:mga06r32_170421_c1_529_1944 426
11 3300005329 Ga0070683_100020491 Ga0070683_1000204912 430
12 3300005334 Ga0068869_100001476 Ga0068869_10000147612 430
13 3300005338 Ga0068868_100071253 Ga0068868_1000712532 430
14 3300005343 Ga0070687_100039417 Ga0070687_1000394171 430
15 3300005344 Ga0070661_100007109 Ga0070661_1000071093 430
16 3300005345 Ga0070692_10004627 Ga0070692_100046272 430
17 3300005354 Ga0070675_100001949 Ga0070675_1000019493 430
18 3300005366 Ga0070659_100013672 Ga0070659_1000136722 430
19 3300005455 Ga0070663_100051786 Ga0070663_1000517861 430
20 3300005535 Ga0070684_100022082 Ga0070684_1000220824 430
21 3300005543 Ga0070672_100047790 Ga0070672_1000477902 430
22 3300005564 Ga0070664_100001406 Ga0070664_1000014063 430
23 3300025926 Ga0207659_10001952 Ga0207659_100019522 430
24 3300025927 Ga0207687_10016153 Ga0207687_100161532 430
25 3300025937 Ga0207669_10026013 Ga0207669_100260131 430
26 3300025944 Ga0207661_10041122 Ga0207661_100411222 430
27 3300026023 Ga0207677_10052772 Ga0207677_100527722 430
28 3300026067 Ga0207678_10033076 Ga0207678_100330762 430
29 3300027907 Ga0207428_10054096 Ga0207428_100540962 430
30 3300031507 Ga0307509_10110327 Ga0307509_101103272 430
31 3300031730 Ga0307516_10034105 Ga0307516_100341052 430
32 3300005436 Ga0070713_100135218 Ga0070713_1001352181 431
33 3300005618 Ga0068864_100064658 Ga0068864_1000646583 431
34 3300005841 Ga0068863_100033597 Ga0068863_1000335975 431
35 3300014325 Ga0163163_10004448 Ga0163163_100044486 431
36 3300025916 Ga0207663_10057559 Ga0207663_100575593 431
37 3300026088 Ga0207641_10054201 Ga0207641_100542013 431
38 3300026095 Ga0207676_10018896 Ga0207676_100188966 431
39 3300035207 Ga0373942_0000023 Ga0373942_0000023_7312_8865 431
40 3300048907 Ga0496104_0072887 Ga0496104_0072887_241_1704 431
41 3300048908 Ga0496105_0014396 Ga0496105_0014396_4682_6145 431
42 3300048912 Ga0496109_0021423 Ga0496109_0021423_1558_3021 431
43 3300048913 Ga0496110_0029340 Ga0496110_0029340_1318_2781 431
44 3300048914 Ga0496111_0040659 Ga0496111_0040659_1685_3148 431
45 3300048915 Ga0496112_0134642 Ga0496112_0134642_593_2056 431
46 3300048916 Ga0496113_0031489 Ga0496113_0031489_1870_3333 431
47 3300013308 Ga0157375_10271926 Ga0157375_102719262 432
48 3300031824 Ga0307413_10034993 Ga0307413_100349932 433
49 3300009094 Ga0111539_10014311 Ga0111539_100143117 435
50 3300009098 Ga0105245_10006364 Ga0105245_100063644 435
51 3300031995 Ga0307409_100081203 Ga0307409_1000812031 435
52 3300050511 nmdc:mga08y16_4369_c1 nmdc:mga08y16_4369_c1_3257_4738 435
53 3300005985 Ga0081539_10006176 Ga0081539_100061768 436
54 3300028794 Ga0307515_10092905 Ga0307515_100929053 436
55 3300031995 Ga0307409_100202345 Ga0307409_1002023451 436
56 3300006844 Ga0075428_100000442 Ga0075428_10000044217 437
57 3300035091 Ga0373951_0000296 Ga0373951_0000296_11969_13375 438
58 3300035242 Ga0373962_0006268 Ga0373962_0006268_1269_2708 439
59 iso_pu_bacteria 8003856774 8003859814 439
60 3300005983 Ga0081540_1030972 Ga0081540_10309723 440
61 3300006847 Ga0075431_100085482 Ga0075431_1000854822 441
62 3300006880 Ga0075429_100037513 Ga0075429_1000375134 441
63 3300028794 Ga0307515_10002913 Ga0307515_1000291329 441
64 3300030522 Ga0307512_10013093 Ga0307512_100130934 441
65 3300031616 Ga0307508_10004518 Ga0307508_100045186 441
66 3300050510 nmdc:mga06r32_146498_c1 nmdc:mga06r32_146498_c1_164_1600 441
67 3300053118 Ga0500594_0004369 Ga0500594_0004369_705_2186 441
68 iso_pu_bacteria 2675903058 2676473242 441
69 3300031456 Ga0307513_10001699 Ga0307513_1000169922 442
70 3300050509 nmdc:mga0qj67_1474_c1 nmdc:mga0qj67_1474_c1_2592_4085 442
71 3300031903 Ga0307407_10014171 Ga0307407_100141713 444
72 3300031995 Ga0307409_100028938 Ga0307409_1000289382 444
73 3300032126 Ga0307415_100006980 Ga0307415_1000069802 444
74 3300033179 Ga0307507_10015089 Ga0307507_100150897 445
75 iso_pu_bacteria 2622736626 2623591404 445
76 iso_pu_bacteria 2996221748 2996224365 445
77 3300025944 Ga0207661_10026912 Ga0207661_100269124 446
78 3300050509 nmdc:mga0qj67_89636_c1 nmdc:mga0qj67_89636_c1_626_2056 446
79 iso_pu_bacteria 2858868258 2858873715 446
80 iso_pu_bacteria 2858902515 2858907317 446
81 iso_pu_bacteria 2902582711 2902584014 446
82 3300009147 Ga0114129_10175500 Ga0114129_101755002 447
83 3300031456 Ga0307513_10040121 Ga0307513_100401212 447
84 3300041512 Ga0451853_0622547 Ga0451853_0622547_2067_3527 447
85 iso_pu_bacteria 2675903059 2676486344 447
86 3300005329 Ga0070683_100192704 Ga0070683_1001927042 448
87 3300005367 Ga0070667_100057530 Ga0070667_1000575302 448
88 3300005618 Ga0068864_100065909 Ga0068864_1000659092 448
89 3300005844 Ga0068862_100170405 Ga0068862_1001704052 448
90 3300005983 Ga0081540_1015981 Ga0081540_10159812 448
91 3300013306 Ga0163162_10228245 Ga0163162_102282451 448
92 3300028379 Ga0268266_10111699 Ga0268266_101116992 448
93 3300031507 Ga0307509_10117554 Ga0307509_101175542 448
94 iso_pu_bacteria 2751185782 2753268589 448
95 3300031730 Ga0307516_10027344 Ga0307516_100273444 449
96 iso_pu_bacteria 2772190715 2772643303 449
97 iso_pu_bacteria 2831935698 2831937619 449
98 iso_pu_bacteria 2855670206 2855673580 449
99 iso_pu_bacteria 2855676851 2855677885 449
100 iso_pu_bacteria 2857288857 2857291043 449
101 iso_pu_bacteria 2858848962 2858854074 449
102 iso_pu_bacteria 2858882152 2858887055 449
103 iso_pu_bacteria 2858888857 2858894440 449
104 iso_pu_bacteria 2858895516 2858896357 449
105 iso_pu_bacteria 2867507094 2867508169 449
106 iso_pu_bacteria 2869061728 2869064285 449
107 iso_pu_bacteria 2869068681 2869069421 449
108 iso_pu_bacteria 2880489317 2880495704 449
109 iso_pu_bacteria 2880495981 2880496647 449
110 iso_pu_bacteria 2929219909 2929225274 449
111 iso_pu_bacteria 2929226422 2929231748 449
112 iso_pu_bacteria 8003870546 8003872600 449
113 iso_pu_bacteria 8054704163 8054704896 449
114 iso_pu_bacteria 8054727385 8054730084 449
115 iso_pu_bacteria 8054734606 8054736082 449
116 iso_pu_bacteria 8055412473 8055415135 449
117 iso_pu_bacteria 2515154088 2515497402 450
118 iso_pu_bacteria 2515154137 2515758267 450
119 iso_pu_bacteria 2515154203 2516091850 450
120 iso_pu_bacteria 2867302475 2867306996 450
121 iso_pu_bacteria 2867312974 2867316887 450
122 iso_pu_bacteria 2867319477 2867325266 450
123 3300005844 Ga0068862_100161174 Ga0068862_1001611741 451
124 3300025972 Ga0207668_10006034 Ga0207668_100060346 451
125 iso_pu_bacteria 2501939600 2501939704 451
126 iso_pu_bacteria 2855683550 2855684087 451
127 iso_pu_bacteria 2856858025 2856858333 451
128 iso_pu_bacteria 649633069 649813430 451
129 3300005985 Ga0081539_10000782 Ga0081539_1000078237 452
130 3300005985 Ga0081539_10001066 Ga0081539_1000106616 452
131 3300031616 Ga0307508_10007784 Ga0307508_100077844 452
132 3300048911 Ga0496108_0000040 Ga0496108_0000040_88204_89673 452
133 3300031456 Ga0307513_10075257 Ga0307513_100752572 453
134 3300028794 Ga0307515_10000217 Ga0307515_1000021732 454
135 iso_pu_bacteria 2832004796 2832006495 454
136 iso_pu_bacteria 2866065130 2866069434 454
137 iso_pu_bacteria 8003830390 8003830736 454
138 3300005340 Ga0070689_100139935 Ga0070689_1001399352 455
139 3300006847 Ga0075431_100030946 Ga0075431_1000309462 455
140 3300009147 Ga0114129_10000214 Ga0114129_1000021418 455
141 3300037312 Ga0395899_0003841 Ga0395899_0003841_2377_3822 455
142 3300037466 Ga0395898_0001963 Ga0395898_0001963_15425_16870 455
143 3300050507 nmdc:mga05p37_1246_c1 nmdc:mga05p37_1246_c1_11620_13119 455
144 3300050508 nmdc:mga09592_35_c1 nmdc:mga09592_35_c1_33797_35296 455
145 3300050509 nmdc:mga0qj67_33_c2 nmdc:mga0qj67_33_c2_45394_46893 455
146 3300050510 nmdc:mga06r32_1_c3 nmdc:mga06r32_1_c3_32254_33753 455
147 3300006844 Ga0075428_100210460 Ga0075428_1002104601 456
148 3300006846 Ga0075430_100009959 Ga0075430_1000099597 456
149 3300025939 Ga0207665_10120239 Ga0207665_101202392 457
150 3300009147 Ga0114129_10038500 Ga0114129_100385004 459
151 3300049581 Ga0501047_0020558 Ga0501047_0020558_3142_4608 459
152 iso_pu_bacteria 2515154155 2515854641 459
153 iso_pu_bacteria 2515154129 2515720954 460
154 iso_pu_bacteria 2515154202 2516082694 460
155 3300048911 Ga0496108_0149568 Ga0496108_0149568_207_1667 461
156 3300048915 Ga0496112_0062534 Ga0496112_0062534_2023_3483 461
157 3300006880 Ga0075429_100092132 Ga0075429_1000921322 462
158 3300009147 Ga0114129_10009335 Ga0114129_1000933514 462
159 iso_pu_bacteria 2827628540 2827631840 462
160 3300005985 Ga0081539_10000116 Ga0081539_1000011629 466
161 3300020082 Ga0206353_11972983 Ga0206353_119729835 467
162 3300005337 Ga0070682_100022117 Ga0070682_1000221175 476
163 3300005530 Ga0070679_100014722 Ga0070679_1000147225 476
164 3300005535 Ga0070684_100009738 Ga0070684_10000973810 476
165 3300025917 Ga0207660_10056034 Ga0207660_100560344 476
166 3300026116 Ga0207674_10056670 Ga0207674_100566702 476
167 3300005327 Ga0070658_10181821 Ga0070658_101818212 481

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07690

MFS_1

Major Facilitator Superfamily

44

431

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
8ex6-assembly1.cif.gz_A human s1p transporter spns2 in an inward-facing open conformation (state 1*) 0.7836 32 461
8g92-assembly1.cif.gz_A structure of inhibitor 16d-bound spns2 0.7807 32 461
8ex6-assembly1.cif.gz_A human s1p transporter spns2 in an inward-facing open conformation (state 1*) 0.7784 32 461
8g92-assembly1.cif.gz_A structure of inhibitor 16d-bound spns2 0.7754 32 461
8ex4-assembly1.cif.gz_A human s1p transporter spns2 in an inward-facing open conformation (state 1) 0.7736 32 461
ID Description Score Start End Superfamily
af_Q54NX1_225_415_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8743 32 198 1.20.1250.20
af_P76198_11_201_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8577 34 193 1.20.1250.20
af_A0A1D6L8U4_23_213_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8462 36 191 1.20.1250.20
af_P25621_30_229_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8337 34 190 1.20.1250.20
af_A0A1D8PPX9_28_226_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8315 34 198 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A1Q9N330-F1-model_v4 Arabinose efflux permease family protein 0.863 25 466 GO:0005886
GO:0022857
AF-A0A2N2QZL9-F1-model_v4 Bcr/CflA family drug resistance efflux transporter 0.8529 31 186 GO:0005886
GO:0015385
GO:1990961
AF-A0A6I4T209-F1-model_v4 MFS transporter 0.8075 35 452 GO:0016020
GO:0022857
AF-A0A4R4ZRM2-F1-model_v4 MFS transporter 0.8069 28 462 GO:0016020
GO:0022857
AF-A0A4R4ZRM2-F1-model_v4 MFS transporter 0.8033 28 462 GO:0016020
GO:0022857

Feature Viewer

pLDDT pTM Quality
78.6 0.78 High
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Predicted Structure (AlphaFold2)

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