F251807

General Info

Members Datasets Scaffolds Average Seq Length
168 119 135 301

Family's Representative Sequence

Representative Sequence 3300005293|Ga0065715_10114979|Ga0065715_101149792
Length 327
Sequence LVALLQLEKLTFTTLGFPFPSGLKKMKYLITIVGPTAIGKTSLSITLAQHFNCDIISCDSRQFFKEMRIGTAVPTTEELAGAQHHFIQNKSIFDTYNVGDFEKEAIAKLDELFLTNDYVVLVGGSGLYVDAILKGFDDFPEIDASVREEVTSNYEKLGLNYLQTELEKLDPNYFDVVAKENPQRMMRALEVCIGTGKPYSTFLNLKKNTRNFTPILIGLEAERSVIYDRINQRVDIMINEGLLAEAKELFPHKDLNALQTVGYRELFRNFEGEISLEFAIEEIKKNTRRFAKRQLTWFKRNENTKWFDYLTDRNEIIKHITGLIHKT

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
3 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
4 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
5 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
6 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
7 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
8 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
9 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
10 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
11 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
12 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
13 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
14 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
15 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
16 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
17 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
18 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
19 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
20 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
21 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
22 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
23 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
24 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
25 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
26 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
27 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
28 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
29 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
30 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
31 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
32 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
33 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
34 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
35 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
36 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
37 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
38 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
41 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
42 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
43 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
44 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
58 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
59 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027617 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
67 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
74 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
75 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
76 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
77 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
78 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
79 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
82 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
83 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
84 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
85 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
86 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
87 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
88 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
89 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
90 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
93 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
94 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
95 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
96 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
97 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
98 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
102 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
105 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
106 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
107 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
108 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
109 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
110 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
111 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
112 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
113 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
114 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
115 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
116 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
117 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
118 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
119 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.76
Metatranscriptomes 0.6
Isolates 19.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.76
Nodule 3.57
Rhizoplane 1.79
Rhizosphere 65.48
Stem 0
Stem Tuber 0
Unclassified 24.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1227597 2162886007 Bacteria 1892
2 JGI24741J21665_1001064 3300001915 Bacteria 8201
3 Ga0006562J51391_1006008 3300003578 Bacteria 7207
4 Ga0065704_10072028 3300005289 Bacteria 9355
5 Ga0065704_10073183 3300005289 Bacteria 7490
6 Ga0065704_10094078 3300005289 Bacteria 2562
7 Ga0065715_10114979 3300005293 Bacteria 2431
8 Ga0070682_100000092 3300005337 Bacteria 81794
9 Ga0070682_100143847 3300005337 Bacteria 1629
10 Ga0070660_100143328 3300005339 Bacteria 1918
11 Ga0070668_100410060 3300005347 Bacteria 1158
12 Ga0070663_100258589 3300005455 Bacteria 1380
13 Ga0070693_100052208 3300005547 Bacteria 2343
14 Ga0068871_100002640 3300006358 Bacteria 12242
15 Ga0099824_1003525 3300006942 Bacteria 22856
16 Ga0079104_1000179 3300006946 Bacteria 90381
17 Ga0099826_10005135 3300006948 Bacteria 9324
18 Ga0105251_10059228 3300009011 Bacteria 1806
19 Ga0105244_10000004 3300009036 Bacteria 492478
20 Ga0105243_10000401 3300009148 Bacteria 45735
21 Ga0157373_10000002 3300013100 Bacteria 750094
22 Ga0157371_10015159 3300013102 Bacteria 5789
23 Ga0157370_10002283 3300013104 Bacteria 23248
24 Ga0157370_10007499 3300013104 Bacteria 11852
25 Ga0157370_10013994 3300013104 Bacteria 8239
26 Ga0157370_10020920 3300013104 Bacteria 6527
27 Ga0157370_10021812 3300013104 Bacteria 6379
28 Ga0157370_10072563 3300013104 Unclassified 3247
29 Ga0157370_10093756 3300013104 Bacteria 2817
30 Ga0157370_10241593 3300013104 Bacteria 1671
31 Ga0157369_10002262 3300013105 Bacteria 23146
32 Ga0157378_10008193 3300013297 Bacteria 9114
33 Ga0157375_10132615 3300013308 Unclassified 2612
34 Ga0157375_10319986 3300013308 Bacteria 1716
35 Ga0182006_1003243 3300015261 Bacteria 8439
36 Ga0182006_1005703 3300015261 Bacteria 5881
37 Ga0182006_1024114 3300015261 Bacteria 2512
38 Ga0182006_1024129 3300015261 Bacteria 2511
39 Ga0163161_10000007 3300017792 Bacteria 301614
40 Ga0163161_10017702 3300017792 Bacteria 4992
41 Ga0163161_10058993 3300017792 Bacteria 2790
42 Ga0207655_1000008 3300025728 Bacteria 734289
43 Ga0207709_10000418 3300025935 Bacteria 41408
44 Ga0207668_10414048 3300025972 Bacteria 1142
45 Ga0209281_1000116 3300027111 Bacteria 209707
46 Ga0209489_110230 3300027361 Bacteria 10774
47 Ga0209995_1005702 3300027471 Bacteria 2000
48 Ga0210002_1001482 3300027617 Bacteria 3320
49 Ga0209282_1058564 3300027666 Bacteria 2159
50 Ga0307515_10200958 3300028794 Bacteria 1869
51 Ga0265316_10124232 3300031344 Bacteria 1947
52 Ga0307408_100011940 3300031548 Bacteria 5748
53 Ga0307405_10000002 3300031731 Bacteria 575196
54 Ga0307413_10000019 3300031824 Bacteria 45584
55 Ga0307410_10000075 3300031852 Bacteria 34266
56 Ga0307406_10000038 3300031901 Bacteria 76386
57 Ga0307406_10000915 3300031901 Bacteria 16552
58 Ga0307407_10028718 3300031903 Bacteria 2977
59 Ga0307414_10000001 3300032004 Bacteria 1352954
60 Ga0307414_10007201 3300032004 Bacteria 6243
61 Ga0307414_10026776 3300032004 Bacteria 3715
62 Ga0307414_10043311 3300032004 Bacteria 3065
63 Ga0307414_10082530 3300032004 Bacteria 2357
64 Ga0307411_10000013 3300032005 Bacteria 145335
65 Ga0316584_0070398 3300036712 Bacteria 2622
66 Ga0400483_087419 3300039062 Bacteria 1509
67 Ga0439447_002503 3300041407 Bacteria 6684
68 Ga0439466_0003065 3300041411 Bacteria 6506
69 Ga0451855_0073104 3300041511 Bacteria 1930
70 Ga0451855_2008146 3300041511 Unclassified 1157
71 Ga0451577_0009772 3300042876 Bacteria 9199
72 Ga0453683_0000678 3300044673 Bacteria 36221
73 Ga0453683_0013407 3300044673 Bacteria 5352
74 Ga0453683_0031406 3300044673 Bacteria 3356
75 Ga0453683_0046495 3300044673 Bacteria 2721
76 Ga0453683_0091325 3300044673 Bacteria 1909
77 Ga0453683_0119583 3300044673 Bacteria 1658
78 Ga0453684_0020048 3300044712 Bacteria 10125
79 Ga0453684_0028964 3300044712 Bacteria 7881
80 Ga0453684_0043791 3300044712 Bacteria 6007
81 Ga0453684_0065084 3300044712 Bacteria 4652
82 Ga0453684_0550698 3300044712 Unclassified 1271
83 Ga0453684_0798046 3300044712 Unclassified 1018
84 Ga0451576_0000022 3300045051 Bacteria 495037
85 Ga0451576_0000952 3300045051 Bacteria 54377
86 Ga0451576_0005906 3300045051 Bacteria 15187
87 Ga0495627_012837 3300046453 Bacteria 2960
88 Ga0495596_0000165 3300046500 Bacteria 46408
89 Ga0495607_0018432 3300046501 Bacteria 4451
90 Ga0495606_0116596 3300046507 Bacteria 1603
91 Ga0495610_0181793 3300046512 Bacteria 874
92 Ga0495616_0026035 3300046513 Bacteria 3118
93 Ga0495643_0000506 3300046522 Bacteria 48801
94 Ga0495663_0006270 3300046525 Bacteria 3284
95 Ga0495625_0015511 3300046660 Bacteria 6033
96 Ga0495625_0186280 3300046660 Bacteria 1377
97 Ga0495681_0084810 3300047470 Bacteria 1408
98 Ga0496102_0137953 3300048905 Bacteria 2285
99 Ga0496105_0207904 3300048908 Bacteria 1596
100 Ga0496113_0242553 3300048916 Bacteria 1438
101 Ga0496116_0000047 3300048919 Bacteria 315121
102 Ga0496116_0000052 3300048919 Bacteria 295469
103 Ga0496117_0000082 3300048920 Bacteria 220895
104 Ga0496118_0009083 3300048921 Bacteria 10125
105 Ga0496119_0000006 3300048922 Bacteria 505999
106 Ga0496121_0009602 3300048924 Bacteria 11085
107 Ga0496121_0049248 3300048924 Bacteria 3575
108 Ga0496122_0000230 3300048925 Bacteria 125542
109 Ga0496122_0001496 3300048925 Bacteria 37350
110 Ga0496122_0002711 3300048925 Bacteria 24605
111 Ga0496123_0000476 3300048926 Bacteria 69684
112 Ga0496123_0002620 3300048926 Bacteria 21798
113 Ga0496123_0052439 3300048926 Bacteria 2707
114 Ga0496124_0004416 3300048927 Bacteria 16402
115 Ga0496124_0004591 3300048927 Bacteria 16013
116 Ga0496124_0101295 3300048927 Bacteria 2334
117 Ga0496125_0000050 3300048928 Bacteria 286703
118 Ga0496125_0000286 3300048928 Bacteria 99915
119 Ga0496125_0049398 3300048928 Bacteria 3496
120 Ga0501034_0185322 3300049571 Bacteria 2045
121 Ga0501224_013063 3300049664 Bacteria 1226
122 Ga0501238_000338 3300049671 Bacteria 6066
123 Ga0501249_000021 3300049679 Bacteria 94598
124 Ga0501249_002064 3300049679 Bacteria 4087
125 Ga0501249_003683 3300049679 Bacteria 3087
126 Ga0501266_000005 3300049763 Bacteria 346750
127 Ga0501280_000732 3300049776 Bacteria 7228
128 Ga0500646_0027199 3300053090 Bacteria 1555
129 Ga0500641_0000027 3300053096 Bacteria 106908
130 Ga0500641_0000083 3300053096 Bacteria 37649
131 Ga0500641_0007390 3300053096 Bacteria 3917
132 Ga0500658_0000076 3300053134 Bacteria 45618
133 Ga0500559_0115903 3300053136 Bacteria 1243
134 Ga0500627_0124811 3300053158 Bacteria 1162
135 Ga0500584_009567 3300053726 Bacteria 4308

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006948 Ga0099826_10005135 Ga0099826_100051355 243
2 3300046512 Ga0495610_0181793 Ga0495610_0181793_18_815 243
3 3300044712 Ga0453684_0798046 Ga0453684_0798046_193_987 244
4 3300041511 Ga0451855_0073104 Ga0451855_0073104_1103_1915 254
5 3300042876 Ga0451577_0009772 Ga0451577_0009772_6610_7521 262
6 3300044712 Ga0453684_0020048 Ga0453684_0020048_480_1391 262
7 3300048924 Ga0496121_0009602 Ga0496121_0009602_4260_5183 272
8 3300039062 Ga0400483_087419 Ga0400483_087419_94_996 274
9 3300053096 Ga0500641_0000027 Ga0500641_0000027_79468_80388 274
10 3300032004 Ga0307414_10082530 Ga0307414_100825302 275
11 3300044673 Ga0453683_0091325 Ga0453683_0091325_561_1484 275
12 3300017792 Ga0163161_10000007 Ga0163161_10000007148 278
13 iso_pu_bacteria 2739367857 2740000771 278
14 iso_pu_bacteria 2739367858 2740005587 278
15 3300041411 Ga0439466_0003065 Ga0439466_0003065_619_1536 279
16 3300044673 Ga0453683_0013407 Ga0453683_0013407_2574_3488 279
17 3300044712 Ga0453684_0065084 Ga0453684_0065084_605_1519 279
18 3300045051 Ga0451576_0005906 Ga0451576_0005906_6546_7460 279
19 iso_pu_bacteria 2738541279 2738731925 279
20 iso_pu_bacteria 2738541285 2738764490 279
21 iso_pu_bacteria 2738543007 2739213505 279
22 iso_pu_bacteria 2904555929 2904556596 279
23 iso_pu_bacteria 2965320100 2965323449 279
24 3300003578 Ga0006562J51391_1006008 Ga0006562J51391_10060087 280
25 3300013102 Ga0157371_10015159 Ga0157371_100151595 280
26 3300013104 Ga0157370_10013994 Ga0157370_100139946 280
27 3300013105 Ga0157369_10002262 Ga0157369_100022626 280
28 3300031548 Ga0307408_100011940 Ga0307408_1000119404 280
29 3300031824 Ga0307413_10000019 Ga0307413_1000001913 280
30 3300031901 Ga0307406_10000038 Ga0307406_1000003859 280
31 3300032004 Ga0307414_10026776 Ga0307414_100267761 280
32 3300032005 Ga0307411_10000013 Ga0307411_1000001389 280
33 3300048927 Ga0496124_0004416 Ga0496124_0004416_14689_15609 280
34 3300049679 Ga0501249_002064 Ga0501249_002064_2251_3171 280
35 3300049679 Ga0501249_003683 Ga0501249_003683_1807_2727 280
36 3300049763 Ga0501266_000005 Ga0501266_000005_5578_6498 280
37 3300053136 Ga0500559_0115903 Ga0500559_0115903_42_962 280
38 iso_pu_bacteria 2513020052 2513235372 280
39 iso_pu_bacteria 2519899754 2520878806 280
40 iso_pu_bacteria 2643221600 2644011486 280
41 iso_pu_bacteria 2643221716 2644642270 280
42 iso_pu_bacteria 2643221725 2644685279 280
43 iso_pu_bacteria 2802428842 2802654194 280
44 iso_pu_bacteria 2816332280 2817415781 280
45 iso_pu_bacteria 2857613821 2857614522 280
46 iso_pu_bacteria 2857618242 2857619097 280
47 iso_pu_bacteria 2881359912 2881360428 280
48 iso_pu_bacteria 2903895155 2903898570 280
49 iso_pu_bacteria 2904419702 2904419807 280
50 iso_pu_bacteria 2919191525 2919194079 280
51 iso_pu_bacteria 2919509842 2919512175 280
52 iso_pu_bacteria 2919683626 2919687153 280
53 iso_pu_bacteria 2929150217 2929153027 280
54 iso_pu_bacteria 2977268062 2977269690 280
55 iso_pu_bacteria 8054307821 8054308243 280
56 iso_pu_bacteria 8055419101 8055421458 280
57 iso_pu_bacteria 8055592153 8055594069 280
58 iso_pu_bacteria 8056440228 8056443918 280
59 3300006358 Ga0068871_100002640 Ga0068871_1000026405 281
60 3300009011 Ga0105251_10059228 Ga0105251_100592281 281
61 3300013100 Ga0157373_10000002 Ga0157373_1000000225 281
62 3300013297 Ga0157378_10008193 Ga0157378_100081934 281
63 3300013308 Ga0157375_10132615 Ga0157375_101326152 281
64 3300015261 Ga0182006_1003243 Ga0182006_10032437 281
65 3300015261 Ga0182006_1024114 Ga0182006_10241144 281
66 3300015261 Ga0182006_1024129 Ga0182006_10241293 281
67 3300028794 Ga0307515_10200958 Ga0307515_102009582 281
68 3300031344 Ga0265316_10124232 Ga0265316_101242322 281
69 3300032004 Ga0307414_10043311 Ga0307414_100433112 281
70 3300048927 Ga0496124_0101295 Ga0496124_0101295_791_1711 281
71 3300049679 Ga0501249_000021 Ga0501249_000021_82731_83651 281
72 3300053096 Ga0500641_0007390 Ga0500641_0007390_2191_3111 281
73 iso_pu_bacteria 2643221667 2644369886 281
74 3300046501 Ga0495607_0018432 Ga0495607_0018432_2764_3672 282
75 3300048919 Ga0496116_0000047 Ga0496116_0000047_286093_287022 282
76 3300048928 Ga0496125_0000050 Ga0496125_0000050_29007_29936 282
77 3300005289 Ga0065704_10094078 Ga0065704_100940782 283
78 3300006946 Ga0079104_1000179 Ga0079104_100017979 283
79 3300013104 Ga0157370_10093756 Ga0157370_100937562 283
80 3300017792 Ga0163161_10058993 Ga0163161_100589933 283
81 3300027111 Ga0209281_1000116 Ga0209281_100011665 283
82 3300044673 Ga0453683_0046495 Ga0453683_0046495_1361_2263 283
83 3300044673 Ga0453683_0119583 Ga0453683_0119583_267_1169 283
84 3300044712 Ga0453684_0550698 Ga0453684_0550698_114_1013 283
85 3300046513 Ga0495616_0026035 Ga0495616_0026035_1594_2505 283
86 3300046522 Ga0495643_0000506 Ga0495643_0000506_41673_42584 283
87 3300046660 Ga0495625_0015511 Ga0495625_0015511_4633_5544 283
88 3300046660 Ga0495625_0186280 Ga0495625_0186280_377_1288 283
89 3300047470 Ga0495681_0084810 Ga0495681_0084810_356_1267 283
90 3300048928 Ga0496125_0000286 Ga0496125_0000286_50297_51211 283
91 3300053090 Ga0500646_0027199 Ga0500646_0027199_549_1460 283
92 iso_pu_bacteria 2881247448 2881248472 283
93 3300005289 Ga0065704_10073183 Ga0065704_100731834 284
94 3300005337 Ga0070682_100143847 Ga0070682_1001438472 284
95 3300006942 Ga0099824_1003525 Ga0099824_100352517 284
96 3300009036 Ga0105244_10000004 Ga0105244_10000004393 284
97 3300013104 Ga0157370_10007499 Ga0157370_100074997 284
98 3300013104 Ga0157370_10020920 Ga0157370_100209203 284
99 3300013104 Ga0157370_10072563 Ga0157370_100725632 284
100 3300013308 Ga0157375_10319986 Ga0157375_103199861 284
101 3300015261 Ga0182006_1005703 Ga0182006_10057035 284
102 3300025728 Ga0207655_1000008 Ga0207655_1000008195 284
103 3300027361 Ga0209489_110230 Ga0209489_1102303 284
104 3300027666 Ga0209282_1058564 Ga0209282_10585642 284
105 3300031731 Ga0307405_10000002 Ga0307405_10000002298 284
106 3300031852 Ga0307410_10000075 Ga0307410_1000007531 284
107 3300031901 Ga0307406_10000915 Ga0307406_100009155 284
108 3300031903 Ga0307407_10028718 Ga0307407_100287184 284
109 3300032004 Ga0307414_10000001 Ga0307414_10000001753 284
110 3300041407 Ga0439447_002503 Ga0439447_002503_4896_5816 284
111 3300041511 Ga0451855_2008146 Ga0451855_2008146_214_1137 284
112 3300045051 Ga0451576_0000022 Ga0451576_0000022_367700_368773 284
113 3300049664 Ga0501224_013063 Ga0501224_013063_152_1072 284
114 3300049671 Ga0501238_000338 Ga0501238_000338_3946_4866 284
115 3300049776 Ga0501280_000732 Ga0501280_000732_3368_4288 284
116 3300053134 Ga0500658_0000076 Ga0500658_0000076_28260_29180 284
117 3300053726 Ga0500584_009567 Ga0500584_009567_2230_3150 284
118 iso_pu_bacteria 2958458903 2958463365 284
119 iso_pu_bacteria 8036736890 8036738219 284
120 3300005455 Ga0070663_100258589 Ga0070663_1002585891 285
121 3300013104 Ga0157370_10021812 Ga0157370_100218127 285
122 3300044673 Ga0453683_0000678 Ga0453683_0000678_25919_26848 285
123 3300044673 Ga0453683_0031406 Ga0453683_0031406_1660_2574 285
124 3300044712 Ga0453684_0028964 Ga0453684_0028964_5829_6740 285
125 3300044712 Ga0453684_0043791 Ga0453684_0043791_4853_5773 285
126 3300045051 Ga0451576_0000952 Ga0451576_0000952_7740_8669 285
127 3300049571 Ga0501034_0185322 Ga0501034_0185322_334_1260 285
128 iso_pu_bacteria 2958512119 2958512605 285
129 3300005293 Ga0065715_10114979 Ga0065715_101149792 286
130 3300005547 Ga0070693_100052208 Ga0070693_1000522082 286
131 3300013104 Ga0157370_10002283 Ga0157370_100022839 286
132 3300013104 Ga0157370_10241593 Ga0157370_102415932 286
133 3300017792 Ga0163161_10017702 Ga0163161_100177025 286
134 3300027471 Ga0209995_1005702 Ga0209995_10057022 286
135 3300027617 Ga0210002_1001482 Ga0210002_10014823 286
136 3300032004 Ga0307414_10007201 Ga0307414_100072014 286
137 3300036712 Ga0316584_0070398 Ga0316584_0070398_1276_2193 286
138 3300046453 Ga0495627_012837 Ga0495627_012837_1712_2632 286
139 3300053096 Ga0500641_0000083 Ga0500641_0000083_10614_11543 286
140 3300053158 Ga0500627_0124811 Ga0500627_0124811_81_1010 286
141 3300001915 JGI24741J21665_1001064 JGI24741J21665_10010643 288
142 3300005337 Ga0070682_100000092 Ga0070682_10000009249 288
143 3300005339 Ga0070660_100143328 Ga0070660_1001433281 288
144 3300046500 Ga0495596_0000165 Ga0495596_0000165_43465_44385 288
145 3300046507 Ga0495606_0116596 Ga0495606_0116596_507_1448 288
146 3300046525 Ga0495663_0006270 Ga0495663_0006270_1987_2928 288
147 3300048905 Ga0496102_0137953 Ga0496102_0137953_799_1719 288
148 3300048908 Ga0496105_0207904 Ga0496105_0207904_261_1181 288
149 3300048916 Ga0496113_0242553 Ga0496113_0242553_353_1273 288
150 3300048919 Ga0496116_0000052 Ga0496116_0000052_90579_91499 288
151 3300048920 Ga0496117_0000082 Ga0496117_0000082_32050_32970 288
152 3300048921 Ga0496118_0009083 Ga0496118_0009083_2894_3814 288
153 3300048922 Ga0496119_0000006 Ga0496119_0000006_143281_144201 288
154 3300048924 Ga0496121_0049248 Ga0496121_0049248_183_1103 288
155 3300048925 Ga0496122_0000230 Ga0496122_0000230_63187_64107 288
156 3300048925 Ga0496122_0002711 Ga0496122_0002711_11989_12909 288
157 3300048926 Ga0496123_0000476 Ga0496123_0000476_11833_12753 288
158 3300048926 Ga0496123_0002620 Ga0496123_0002620_543_1463 288
159 3300048927 Ga0496124_0004591 Ga0496124_0004591_10839_11759 288
160 3300048928 Ga0496125_0049398 Ga0496125_0049398_853_1773 288
161 2162886007 SwRhRL2b_contig_1227597 SwRhRL2b_0766.00005210 289
162 3300005289 Ga0065704_10072028 Ga0065704_100720286 289
163 3300005347 Ga0070668_100410060 Ga0070668_1004100601 289
164 3300009148 Ga0105243_10000401 Ga0105243_1000040115 289
165 3300025935 Ga0207709_10000418 Ga0207709_1000041828 289
166 3300025972 Ga0207668_10414048 Ga0207668_104140481 289
167 3300048925 Ga0496122_0001496 Ga0496122_0001496_2867_3784 289
168 3300048926 Ga0496123_0052439 Ga0496123_0052439_1447_2364 289

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01715

IPPT

IPP transferase

62

301

0.99

PF01745

IPT

Isopentenyl transferase

27

136

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3crr-assembly1.cif.gz_A structure of trna dimethylallyltransferase: rna modification through a channel 0.9259 1 284
3crr-assembly1.cif.gz_A structure of trna dimethylallyltransferase: rna modification through a channel 0.8995 1 284
2zm5-assembly1.cif.gz_A crystal structure of trna modification enzyme miaa in the complex with trna(phe) 0.8958 1 282
2qgn-assembly1.cif.gz_A crystal structure of trna isopentenylpyrophosphate transferase (bh2366) from bacillus halodurans, northeast structural genomics consortium target bhr41. 0.8777 1 288
2zm5-assembly1.cif.gz_A crystal structure of trna modification enzyme miaa in the complex with trna(phe) 0.8723 1 282
ID Description Score Start End Superfamily
3exaA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.9417 181 258 1.10.287.890
3crrA02 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.9409 183 261 1.10.287.890
3a8tA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9325 2 108 3.40.50.300
3d3qB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9188 1 107 3.40.50.300
3exaA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.9187 181 258 1.10.287.890
ID Description Score Start End GO Terms
AF-A0A7W1F6L5-F1-model_v4 AAA family ATPase 0.9751 2 103 GO:0005524
GO:0006400
GO:0052381
AF-A0A0K8TFV6-F1-model_v4 tRNA dimethylallyltransferase, mitochondrial 0.9704 4 107 GO:0005524
GO:0005739
GO:0006400
GO:0052381
AF-A0A7V1JL28-F1-model_v4 tRNA (Adenosine(37)-N6)-dimethylallyltransferase MiaA 0.9674 4 98 GO:0005524
GO:0006400
GO:0052381
AF-A0A496JYQ4-F1-model_v4 deleted 0.9643 1 100
AF-A0A7W4EZF6-F1-model_v4 tRNA (Adenosine(37)-N6)-dimethylallyltransferase MiaA 0.9634 155 283 GO:0005524
GO:0006400
GO:0052381

Feature Viewer

pLDDT pTM Quality
87.22 0.8 High
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Predicted Structure (AlphaFold2)

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