F253156

General Info

Members Datasets Scaffolds Average Seq Length
168 125 336 731

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0000584|Ga0451577_0000584_42929_45247
Length 772
Sequence MNPHGVKFTNQDRTLEASFFFCKRLSQKFLKFEPNHFPVSKPILLITPPFTQLNTPYPATAYIKGYLNTIGKKAFQSDLGIRVILRIFSKEGLTKVFEAIERRGLKHLSANCQRIVKLQRDYLHTIDPVIRFLQFDNPTLAYTICEGDFLPQASRFAQLDDLDWAFGTMGIQDKARHFATLYLEDIGDLISEALDPHFGFSRYAERLGRSATSFDPLHEALEGPESFTDQFLLEDLGQLIQETDPYLICVSVPFPGNLYGALRCGKYIKTHFPHIKVAMGGGYPNTELRSLKEPRVFKYLDFITLDDGERPLTCLLEHLDGKREIAELKRTFLLMDGKVRYCNGAKHMDIPFSQTGTPDYSGLPLNKYLSVIEIANPMHRLWSDGRWNKLTMAHGCYWKKCSFCDISLDYIKNYEPVSAQILCDRIEELIAQTGETGFHFVDEAAPPALMRELAIEILKRNLKISWWTNIRFEERFTEDLCRLLRASGCIAVSGGLEVASDRLLEMMQKGVTVAQVARVARNFTASGIMVHAYLMYGFPTQTAQETIDSLEMVRQLFLNNVLQSGFWHLFAMTSHAPIGIDPGAFRVVRTGPELGLFADNDLSHDDPEGADHELFGEGLKKALFNYMHGICFELPLQEWFDFKIPKTKVSPHFIENAIMVETGKVMKPNAKMVWLGNMPELEISENLKKGKTTTTYRLVIENKNGTDTISVSPREGEWLETMVREMMPKAGKKEMTFADFEQHYSSANLGEFDRFLGSKPWRSLREYGLVMV

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
18 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
19 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
34 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
35 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
40 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
41 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
43 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
57 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
58 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
59 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
60 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
61 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
62 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
63 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
64 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
65 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
66 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
67 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
68 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
69 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
70 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
71 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
74 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
75 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
76 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
77 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
80 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
81 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
82 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
83 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
84 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
85 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
89 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
90 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
91 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
92 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
93 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
94 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
95 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
96 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
97 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
98 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
99 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
100 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
101 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
102 2585428095 Chryseobacterium sp. YR005 Isolate Rhizosphere
103 2738541278 Niastella sp. CF465 Isolate Unclassified
104 2738541284 Pedobacter sp. YR016 Isolate Unclassified
105 2738543023 Pedobacter sp. OK628 Isolate Unclassified
106 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
107 2818991444 Filimonas endophytica 3197 Isolate Unclassified
108 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
109 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
110 2840677318 Chitinophaga alhagiae T22 Isolate Unclassified
111 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
112 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
113 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
114 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
115 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
116 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
117 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
118 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
119 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
120 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
121 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
122 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
123 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
124 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
125 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.74
Metatranscriptomes 0
Isolates 17.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.74
Nodule 0
Rhizoplane 1.19
Rhizosphere 76.79
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0000584 3300042876 Bacteria 58655
2 SwRhRL2b_contig_779164 2162886007 Bacteria 45880
3 rootH1_10000705 3300003323 Bacteria 55845
4 rootH1_10003251 3300003323 Bacteria 28271
5 rootH1_10074703 3300003323 Bacteria 21239
6 JGI25160J50197_1002242 3300003354 Bacteria 9077
7 Ga0055536_1008978 3300003781 Bacteria 4211
8 Ga0065165_1001300 3300005262 Bacteria 27925
9 Ga0065714_10064455 3300005288 Bacteria 72722
10 Ga0065714_10065243 3300005288 Bacteria 11504
11 Ga0065704_10070133 3300005289 Bacteria 1266035
12 Ga0065704_10071599 3300005289 Bacteria 10545
13 Ga0065704_10074185 3300005289 Bacteria 6466
14 Ga0065704_10081084 3300005289 Bacteria 3823
15 Ga0070670_100047324 3300005331 Bacteria 3700
16 Ga0070666_10000024 3300005335 Bacteria 161355
17 Ga0070682_100015688 3300005337 Bacteria 4394
18 Ga0070667_100018010 3300005367 Bacteria 5854
19 Ga0070665_100001316 3300005548 Bacteria 29624
20 Ga0068859_100000018 3300005617 Bacteria 248813
21 Ga0068859_100004404 3300005617 Bacteria 14371
22 Ga0068851_10000046 3300005834 Bacteria 79164
23 Ga0068863_100037369 3300005841 Bacteria 4623
24 Ga0068863_100053172 3300005841 Bacteria 3838
25 Ga0068858_100010503 3300005842 Bacteria 8772
26 Ga0068871_100007350 3300006358 Bacteria 7860
27 Ga0097620_100000018 3300006931 Bacteria 248813
28 Ga0097620_100004404 3300006931 Bacteria 14371
29 Ga0105240_10000134 3300009093 Bacteria 151778
30 Ga0105240_10017239 3300009093 Bacteria 9741
31 Ga0105247_10003256 3300009101 Bacteria 10648
32 Ga0114129_10004291 3300009147 Bacteria 20145
33 Ga0105241_10009119 3300009174 Bacteria 7302
34 Ga0105237_10008163 3300009545 Bacteria 11371
35 Ga0105237_10089716 3300009545 Bacteria 3063
36 Ga0105249_10013548 3300009553 Bacteria 7202
37 Ga0105239_10003381 3300010375 Bacteria 19576
38 Ga0157373_10027718 3300013100 Bacteria 4087
39 Ga0157371_10000049 3300013102 Bacteria 183917
40 Ga0157370_10044562 3300013104 Bacteria 4262
41 Ga0157378_10001699 3300013297 Bacteria 19799
42 Ga0163162_10010701 3300013306 Bacteria 8923
43 Ga0163162_10013858 3300013306 Bacteria 7875
44 Ga0157372_10005764 3300013307 Bacteria 13198
45 Ga0157380_10000553 3300014326 Bacteria 23050
46 Ga0182008_10000011 3300014497 Bacteria 297770
47 Ga0182008_10000018 3300014497 Bacteria 230609
48 Ga0182008_10019416 3300014497 Bacteria 3509
49 Ga0157379_10021797 3300014968 Bacteria 5675
50 Ga0157376_10005294 3300014969 Bacteria 9013
51 Ga0182007_10006240 3300015262 Bacteria 5129
52 Ga0182007_10011149 3300015262 Bacteria 3509
53 Ga0163161_10025115 3300017792 Bacteria 4214
54 Ga0209646_1002353 3300025246 Bacteria 4259
55 Ga0209130_1001301 3300025284 Bacteria 17090
56 Ga0209676_1001093 3300025292 Bacteria 30238
57 Ga0207426_1000032 3300025302 Bacteria 457997
58 Ga0207426_1000096 3300025302 Bacteria 271627
59 Ga0207656_10000024 3300025321 Bacteria 88657
60 Ga0207680_10000026 3300025903 Bacteria 79960
61 Ga0207695_10000010 3300025913 Bacteria 981919
62 Ga0207695_10027106 3300025913 Bacteria 6382
63 Ga0207671_10001820 3300025914 Bacteria 23785
64 Ga0207671_10016462 3300025914 Bacteria 5745
65 Ga0207691_10020387 3300025940 Bacteria 6267
66 Ga0207689_10001176 3300025942 Bacteria 25213
67 Ga0207658_10004962 3300025986 Bacteria 9175
68 Ga0207703_10004551 3300026035 Bacteria 11366
69 Ga0207641_10000167 3300026088 Bacteria 92790
70 Ga0207641_10067481 3300026088 Bacteria 3064
71 Ga0207641_10101434 3300026088 Bacteria 2536
72 Ga0207648_10074271 3300026089 Bacteria 2963
73 Ga0207676_10000992 3300026095 Bacteria 21875
74 Ga0307515_10000001 3300028794 Bacteria 4259510
75 Ga0307515_10001274 3300028794 Bacteria 57313
76 Ga0307515_10011558 3300028794 Bacteria 16742
77 Ga0265338_10060931 3300028800 Bacteria 3310
78 Ga0265327_10000191 3300031251 Bacteria 130083
79 Ga0307508_10001393 3300031616 Bacteria 27225
80 Ga0307405_10000001 3300031731 Bacteria 1731270
81 Ga0307410_10000088 3300031852 Bacteria 30885
82 Ga0307406_10000085 3300031901 Bacteria 52922
83 Ga0307406_10029268 3300031901 Bacteria 3335
84 Ga0307407_10002857 3300031903 Bacteria 6911
85 Ga0307414_10000012 3300032004 Bacteria 322675
86 Ga0307414_10000038 3300032004 Bacteria 150774
87 Ga0307414_10000929 3300032004 Bacteria 15007
88 Ga0307414_10003451 3300032004 Bacteria 8435
89 Ga0307414_10003588 3300032004 Bacteria 8306
90 Ga0307414_10049535 3300032004 Bacteria 2905
91 Ga0307510_10020624 3300033180 Bacteria 7698
92 Ga0439431_0004209 3300041997 Bacteria 3157
93 Ga0439457_000940 3300042014 Bacteria 8741
94 Ga0451577_0007755 3300042876 Bacteria 10522
95 Ga0451577_0015137 3300042876 Bacteria 7178
96 Ga0466969_0001394 3300044656 Bacteria 13031
97 Ga0466972_0000078 3300044658 Bacteria 91188
98 Ga0466972_0030489 3300044658 Bacteria 2654
99 Ga0453683_0000021 3300044673 Bacteria 284502
100 Ga0453683_0000146 3300044673 Bacteria 103930
101 Ga0453684_0000154 3300044712 Bacteria 305062
102 Ga0453684_0000549 3300044712 Bacteria 141927
103 Ga0453684_0002074 3300044712 Bacteria 50909
104 Ga0453684_0017348 3300044712 Bacteria 11156
105 Ga0453684_0141974 3300044712 Bacteria 2866
106 Ga0466957_0000951 3300044842 Bacteria 14841
107 Ga0466959_0000033 3300045049 Bacteria 109901
108 Ga0451576_0000032 3300045051 Bacteria 397014
109 Ga0451576_0000279 3300045051 Bacteria 125074
110 Ga0451576_0001274 3300045051 Bacteria 44024
111 Ga0451576_0005239 3300045051 Bacteria 16366
112 Ga0451576_0017560 3300045051 Bacteria 7864
113 Ga0495616_0008050 3300046513 Bacteria 6278
114 Ga0495643_0001598 3300046522 Bacteria 20074
115 Ga0495643_0028762 3300046522 Bacteria 3113
116 Ga0495663_0000037 3300046525 Bacteria 70080
117 Ga0495663_0003378 3300046525 Bacteria 4614
118 Ga0495609_0000224 3300046538 Bacteria 55767
119 Ga0495633_0000627 3300046558 Bacteria 33103
120 Ga0495668_0000339 3300046616 Bacteria 62659
121 Ga0495668_0002439 3300046616 Bacteria 15283
122 Ga0495636_0000047 3300047318 Bacteria 52861
123 Ga0495672_0014614 3300047320 Bacteria 5367
124 Ga0495686_0006349 3300047472 Bacteria 9068
125 Ga0496114_0018741 3300048917 Bacteria 5600
126 Ga0496115_0017917 3300048918 Bacteria 5426
127 Ga0496121_0000054 3300048924 Bacteria 307236
128 Ga0496125_0000031 3300048928 Bacteria 365156
129 Ga0496126_0048006 3300048929 Bacteria 3906
130 Ga0501047_0015289 3300049581 Bacteria 7311
131 Ga0501225_0002959 3300049705 Bacteria 5205
132 Ga0501280_000576 3300049776 Bacteria 8521
133 nmdc:mga05p37_13808_c1 3300050507 Bacteria 8443
134 Ga0500578_0000245 3300053086 Bacteria 67264
135 Ga0500583_0000099 3300053092 Bacteria 47358
136 Ga0500642_0013802 3300053130 Bacteria 2984
137 Ga0500616_0003534 3300053153 Bacteria 11863
138 Ga0500627_0029253 3300053158 Bacteria 2296
139 Ga0500633_0001181 3300053160 Bacteria 4756
140 2511235129 2511231000 Bacteria 4488346
141 2522548161 2522125168 Bacteria 7376607
142 2585157663 2582581281 Bacteria 4487904
143 2585162762 2582581282 Bacteria 4495830
144 2585424687 2582581873 Bacteria 3032664
145 2587866868 2585428095 Bacteria 3789702
146 2738729277 2738541278 Bacteria 9755573
147 2738761052 2738541284 Bacteria 5199923
148 2739301145 2738543023 Bacteria 6767879
149 2740057948 2739367874 Bacteria 4872888
150 2819586427 2818991444 Bacteria 6968812
151 2819681533 2818991460 Bacteria 7595395
152 2833642897 2833640130 Bacteria 4858325
153 2840677339 2840677318 Bacteria 2664183
154 2857615814 2857613821 Bacteria 4917088
155 2881250163 2881247448 Bacteria 3717788
156 2881957340 2881955468 Bacteria 3545609
157 2883072768 2883068021 Bacteria 6192739
158 2884792779 2884791551 Bacteria 8511252
159 2896085157 2896085136 Bacteria 6129793
160 2902048850 2902048731 Bacteria 4976191
161 2904423461 2904419702 Bacteria 5166287
162 2919509991 2919509842 Bacteria 4104664
163 2919696407 2919692658 Bacteria 5943958
164 2929181266 2929177148 Bacteria 7883697
165 2945983670 2945977869 Bacteria 7777518
166 2946016920 2946013367 Bacteria 7766675
167 2958514557 2958512119 Bacteria 4528530
168 8036738676 8036736890 Bacteria 2944828
169 Ga0451577_0000584
170 SwRhRL2b_contig_779164
171 rootH1_10000705
172 rootH1_10003251
173 rootH1_10074703
174 JGI25160J50197_1002242
175 Ga0055536_1008978
176 Ga0065165_1001300
177 Ga0065714_10064455
178 Ga0065714_10065243
179 Ga0065704_10070133
180 Ga0065704_10071599
181 Ga0065704_10074185
182 Ga0065704_10081084
183 Ga0070670_100047324
184 Ga0070666_10000024
185 Ga0070682_100015688
186 Ga0070667_100018010
187 Ga0070665_100001316
188 Ga0068859_100000018
189 Ga0068859_100004404
190 Ga0068851_10000046
191 Ga0068863_100037369
192 Ga0068863_100053172
193 Ga0068858_100010503
194 Ga0068871_100007350
195 Ga0097620_100000018
196 Ga0097620_100004404
197 Ga0105240_10000134
198 Ga0105240_10017239
199 Ga0105247_10003256
200 Ga0114129_10004291
201 Ga0105241_10009119
202 Ga0105237_10008163
203 Ga0105237_10089716
204 Ga0105249_10013548
205 Ga0105239_10003381
206 Ga0157373_10027718
207 Ga0157371_10000049
208 Ga0157370_10044562
209 Ga0157378_10001699
210 Ga0163162_10010701
211 Ga0163162_10013858
212 Ga0157372_10005764
213 Ga0157380_10000553
214 Ga0182008_10000011
215 Ga0182008_10000018
216 Ga0182008_10019416
217 Ga0157379_10021797
218 Ga0157376_10005294
219 Ga0182007_10006240
220 Ga0182007_10011149
221 Ga0163161_10025115
222 Ga0209646_1002353
223 Ga0209130_1001301
224 Ga0209676_1001093
225 Ga0207426_1000032
226 Ga0207426_1000096
227 Ga0207656_10000024
228 Ga0207680_10000026
229 Ga0207695_10000010
230 Ga0207695_10027106
231 Ga0207671_10001820
232 Ga0207671_10016462
233 Ga0207691_10020387
234 Ga0207689_10001176
235 Ga0207658_10004962
236 Ga0207703_10004551
237 Ga0207641_10000167
238 Ga0207641_10067481
239 Ga0207641_10101434
240 Ga0207648_10074271
241 Ga0207676_10000992
242 Ga0307515_10000001
243 Ga0307515_10001274
244 Ga0307515_10011558
245 Ga0265338_10060931
246 Ga0265327_10000191
247 Ga0307508_10001393
248 Ga0307405_10000001
249 Ga0307410_10000088
250 Ga0307406_10000085
251 Ga0307406_10029268
252 Ga0307407_10002857
253 Ga0307414_10000012
254 Ga0307414_10000038
255 Ga0307414_10000929
256 Ga0307414_10003451
257 Ga0307414_10003588
258 Ga0307414_10049535
259 Ga0307510_10020624
260 Ga0439431_0004209
261 Ga0439457_000940
262 Ga0451577_0007755
263 Ga0451577_0015137
264 Ga0466969_0001394
265 Ga0466972_0000078
266 Ga0466972_0030489
267 Ga0453683_0000021
268 Ga0453683_0000146
269 Ga0453684_0000154
270 Ga0453684_0000549
271 Ga0453684_0002074
272 Ga0453684_0017348
273 Ga0453684_0141974
274 Ga0466957_0000951
275 Ga0466959_0000033
276 Ga0451576_0000032
277 Ga0451576_0000279
278 Ga0451576_0001274
279 Ga0451576_0005239
280 Ga0451576_0017560
281 Ga0495616_0008050
282 Ga0495643_0001598
283 Ga0495643_0028762
284 Ga0495663_0000037
285 Ga0495663_0003378
286 Ga0495609_0000224
287 Ga0495633_0000627
288 Ga0495668_0000339
289 Ga0495668_0002439
290 Ga0495636_0000047
291 Ga0495672_0014614
292 Ga0495686_0006349
293 Ga0496114_0018741
294 Ga0496115_0017917
295 Ga0496121_0000054
296 Ga0496125_0000031
297 Ga0496126_0048006
298 Ga0501047_0015289
299 Ga0501225_0002959
300 Ga0501280_000576
301 nmdc:mga05p37_13808_c1
302 Ga0500578_0000245
303 Ga0500583_0000099
304 Ga0500642_0013802
305 Ga0500616_0003534
306 Ga0500627_0029253
307 Ga0500633_0001181
308 2511235129
309 2522548161
310 2585157663
311 2585162762
312 2585424687
313 2587866868
314 2738729277
315 2738761052
316 2739301145
317 2740057948
318 2819586427
319 2819681533
320 2833642897
321 2840677339
322 2857615814
323 2881250163
324 2881957340
325 2883072768
326 2884792779
327 2896085157
328 2902048850
329 2904423461
330 2919509991
331 2919696407
332 2929181266
333 2945983670
334 2946016920
335 2958514557
336 8036738676

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

390

553

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7av6-assembly1.cif.gz_A-2 fast in a domain-swapped dimer form 0.7475 642 676
6wtf-assembly1.cif.gz_A structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7378 198 586
6efn-assembly1.cif.gz_A-2 structure of a ripp maturase, skfb 0.7372 353 535
1olt-assembly1.cif.gz_A coproporphyrinogen iii oxidase (hemn) from escherichia coli is a radical sam enzyme. 0.7371 383 538
6wtf-assembly2.cif.gz_B structure of radical s-adenosylmethionine methyltransferase, tsrm, from kitasatospora setae with tryptophan substrate and sam analog (aza-sam) bound 0.7365 198 586
ID Description Score Start End Superfamily
af_P96395_164_380_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8224 351 520 3.80.30.20
af_Q58882_171_402_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8078 351 545 3.80.30.20
5z4pB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Tubulin/FtsZ, GTPase domain 0.7931 192 243 3.40.50.1440
af_Q59015_207_434_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7924 365 540 3.80.30.20
af_A4I224_442_552_2.30.29.30 Mainly Beta;Roll;PH-domain like;Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.7904 639 689 2.30.29.30
ID Description Score Start End GO Terms
AF-A0A4V2AVJ4-F1-model_v4 Radical SAM protein 0.9772 102 529 GO:0003824
GO:0005829
GO:0046872
GO:0051536
AF-A0A3C0G9S6-F1-model_v4 Radical SAM protein 0.9755 6 556 GO:0003824
GO:0005829
GO:0046872
GO:0051536
AF-A0A4V2AVJ4-F1-model_v4 Radical SAM protein 0.9749 102 529 GO:0003824
GO:0005829
GO:0046872
GO:0051536
AF-A0A3L7RWA2-F1-model_v4 Radical SAM protein 0.971 351 624 GO:0003824
GO:0005829
GO:0051536
AF-A0A3C0G9S6-F1-model_v4 Radical SAM protein 0.9668 6 556 GO:0003824
GO:0005829
GO:0046872
GO:0051536

Map