F253374

General Info

Members Datasets Scaffolds Average Seq Length
168 112 167 408

Family's Representative Sequence

Representative Sequence 3300047322|Ga0495680_0185082|Ga0495680_0185082_83_1396
Length 437
Sequence VRQILLRDLLISRIDICNSTAQTGSMAFQKLGLSAAALEGVKAAGYVEPTPIQLRAIPLIMAGQDVIGSAQTGTGKTAAFALPILSKLGNHDPRTRVLVLEPTRELAAQVETAVRDFARFTNLQIAVIFGGVGYGRQNEALKRGADIIVATPGRLLDHLQQGNAHLDHVQHLVLDEADRMLDMGFLPDVRRIVQRCPRDRQTMLFSATIPPEIDSLIKWAMRNPQTIEIGARRTPAETVKHVIYPVSDAQKTDLLLALLGQVNYESVIVFCRTKYGADRVAHLLKRNNHAVAVLHSNRTQREREQALRGFRDGRYEALVATDIASRGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAEAKGDAFTLMVAEDSKHVAAIERFISQKIPRVRLENFDYRYTALFEEEKPGALKGHERRVQAVRVRGGYYFGPAKRRKR

Samples

Sample ID Description Type Environment
1 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
8 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
9 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
16 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
19 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
25 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
26 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
27 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
36 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
37 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
38 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
39 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
40 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
41 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
42 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
43 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
44 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
48 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
49 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
52 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
53 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
54 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
55 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
56 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
57 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
58 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
59 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
60 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
61 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
62 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
63 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
64 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
65 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
66 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
75 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
76 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
77 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
78 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
79 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
80 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
81 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
82 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
83 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
84 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
85 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
86 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
87 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
88 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
89 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
90 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
91 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
92 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
93 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
94 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
95 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
96 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
99 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.4
Metatranscriptomes 0
Isolates 0.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.6
Rhizosphere 97.02
Stem 0
Stem Tuber 0
Unclassified 2.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10002900 3300003320 Bacteria 11437
2 Ga0070690_100018906 3300005330 Bacteria 4172
3 Ga0070666_10021366 3300005335 Bacteria 4196
4 Ga0070689_100009094 3300005340 Bacteria 7033
5 Ga0070691_10017984 3300005341 Bacteria 3255
6 Ga0068856_100000017 3300005614 Bacteria 154589
7 Ga0070702_100059582 3300005615 Bacteria 2216
8 Ga0068859_100017566 3300005617 Bacteria 7193
9 Ga0068859_100250058 3300005617 Bacteria 1863
10 Ga0068864_100037392 3300005618 Bacteria 4142
11 Ga0068864_100299492 3300005618 Bacteria 1505
12 Ga0068863_100051033 3300005841 Bacteria 3921
13 Ga0068863_100057370 3300005841 Bacteria 3685
14 Ga0081455_10059326 3300005937 Bacteria 3231
15 Ga0097621_100179679 3300006237 Bacteria 1828
16 Ga0075428_100003977 3300006844 Bacteria 16218
17 Ga0075428_100004534 3300006844 Bacteria 15354
18 Ga0075430_100031130 3300006846 Bacteria 4529
19 Ga0075433_10240883 3300006852 Bacteria 1606
20 Ga0075429_100147529 3300006880 Bacteria 2059
21 Ga0075429_100223599 3300006880 Bacteria 1649
22 Ga0068865_100241598 3300006881 Bacteria 1421
23 Ga0097620_100017566 3300006931 Bacteria 7193
24 Ga0097620_100250040 3300006931 Bacteria 1863
25 Ga0105240_10002804 3300009093 Bacteria 27529
26 Ga0111539_10027302 3300009094 Bacteria 6971
27 Ga0111539_10044611 3300009094 Bacteria 5311
28 Ga0114129_10051990 3300009147 Bacteria 5751
29 Ga0105238_10022199 3300009551 Bacteria 6471
30 Ga0105238_10050260 3300009551 Bacteria 4197
31 Ga0157371_10121818 3300013102 Bacteria 1855
32 Ga0157378_10133593 3300013297 Bacteria 2299
33 Ga0163162_10013016 3300013306 Bacteria 8119
34 Ga0157375_10000027 3300013308 Bacteria 220909
35 Ga0163163_10000194 3300014325 Bacteria 62568
36 Ga0163163_10001224 3300014325 Bacteria 21706
37 Ga0207684_10170498 3300025910 Bacteria 1876
38 Ga0207695_10047059 3300025913 Bacteria 4568
39 Ga0207694_10027079 3300025924 Bacteria 4365
40 Ga0207670_10007862 3300025936 Bacteria 5985
41 Ga0207670_10140033 3300025936 Bacteria 1783
42 Ga0207702_10000781 3300026078 Bacteria 33694
43 Ga0207676_10187061 3300026095 Bacteria 1819
44 Ga0207428_10076941 3300027907 Bacteria 2612
45 Ga0265337_1004981 3300028556 Bacteria 5394
46 Ga0265319_1000007 3300028563 Bacteria 217194
47 Ga0265319_1021320 3300028563 Bacteria 2381
48 Ga0265318_10050275 3300028577 Bacteria 1567
49 Ga0265323_10001512 3300028653 Bacteria 11340
50 Ga0265336_10017377 3300028666 Bacteria 2343
51 Ga0265338_10000347 3300028800 Bacteria 84472
52 Ga0265338_10000554 3300028800 Bacteria 65376
53 Ga0265338_10000710 3300028800 Bacteria 56899
54 Ga0265338_10011633 3300028800 Bacteria 10142
55 Ga0265338_10027892 3300028800 Bacteria 5650
56 Ga0265338_10040095 3300028800 Bacteria 4404
57 Ga0265338_10053411 3300028800 Bacteria 3614
58 Ga0265338_10093254 3300028800 Bacteria 2481
59 Ga0265324_10000554 3300029957 Bacteria 25600
60 Ga0265324_10000792 3300029957 Bacteria 20717
61 Ga0265324_10014287 3300029957 Bacteria 2942
62 Ga0265324_10014293 3300029957 Bacteria 2941
63 Ga0265320_10010981 3300031240 Bacteria 5355
64 Ga0265320_10013602 3300031240 Bacteria 4672
65 Ga0265340_10028285 3300031247 Bacteria 2821
66 Ga0265327_10004378 3300031251 Bacteria 12537
67 Ga0265327_10005123 3300031251 Bacteria 11128
68 Ga0265316_10045130 3300031344 Bacteria 3501
69 Ga0265316_10230446 3300031344 Bacteria 1364
70 Ga0307513_10225795 3300031456 Bacteria 1690
71 Ga0265313_10001008 3300031595 Bacteria 27543
72 Ga0265314_10049534 3300031711 Bacteria 2940
73 Ga0265342_10048277 3300031712 Bacteria 2553
74 Ga0373930_0002319 3300034816 Bacteria 2939
75 Ga0373938_0005117 3300034957 Bacteria 2218
76 Ga0373926_0013001 3300035083 Bacteria 2819
77 Ga0373928_0000918 3300035084 Bacteria 5771
78 Ga0373929_0002381 3300035085 Bacteria 3457
79 Ga0373944_0000122 3300035089 Bacteria 14607
80 Ga0373949_0004794 3300035090 Bacteria 3068
81 Ga0373932_0000001 3300035112 Bacteria 1459067
82 Ga0373945_0050701 3300035116 Bacteria 1526
83 Ga0373956_0003041 3300035119 Bacteria 6791
84 Ga0373943_0044611 3300035170 Bacteria 2158
85 Ga0373946_0023692 3300035171 Bacteria 2401
86 Ga0373962_0000033 3300035242 Bacteria 33867
87 Ga0373931_0000002 3300035691 Bacteria 599830
88 Ga0373935_0026101 3300035692 Bacteria 3603
89 Ga0373927_0012719 3300035695 Bacteria 5597
90 Ga0373927_0017258 3300035695 Bacteria 4752
91 Ga0373927_0023879 3300035695 Bacteria 4000
92 Ga0373927_0038798 3300035695 Bacteria 3092
93 Ga0373947_0005330 3300035725 Bacteria 7512
94 Ga0373947_0043624 3300035725 Bacteria 2679
95 Ga0373947_0110337 3300035725 Bacteria 1738
96 Ga0373937_0012432 3300036401 Bacteria 7488
97 Ga0316584_0079682 3300036712 Bacteria 2454
98 Ga0316584_0187736 3300036712 Bacteria 1529
99 Ga0373925_0000121 3300037068 Bacteria 84624
100 Ga0373925_0006780 3300037068 Bacteria 8394
101 Ga0373925_0219364 3300037068 Bacteria 1517
102 Ga0400489_18393 3300039093 Bacteria 5485
103 Ga0451577_0007538 3300042876 Bacteria 10685
104 Ga0451577_0028240 3300042876 Bacteria 5076
105 Ga0451577_0181379 3300042876 Bacteria 1898
106 Ga0453684_0003390 3300044712 Bacteria 36045
107 Ga0451576_0000098 3300045051 Bacteria 220454
108 Ga0451576_0010664 3300045051 Bacteria 10529
109 Ga0451576_0074407 3300045051 Bacteria 3535
110 Ga0451576_0088197 3300045051 Bacteria 3227
111 Ga0451576_0131778 3300045051 Bacteria 2606
112 Ga0495592_0000485 3300046454 Bacteria 28950
113 Ga0495592_0026467 3300046454 Bacteria 4398
114 Ga0495651_0052387 3300046462 Bacteria 3144
115 Ga0495662_0094434 3300046476 Bacteria 1460
116 Ga0495664_0145719 3300046477 Bacteria 1436
117 Ga0495618_0014197 3300046514 Bacteria 4850
118 Ga0495628_0010532 3300046516 Bacteria 7849
119 Ga0495628_0086211 3300046516 Bacteria 2435
120 Ga0495630_0000066 3300046517 Bacteria 85075
121 Ga0495630_0013060 3300046517 Bacteria 6037
122 Ga0495666_0019774 3300046526 Bacteria 3339
123 Ga0495652_0128045 3300046529 Bacteria 2014
124 Ga0495640_0018566 3300046533 Bacteria 5152
125 Ga0495640_0033127 3300046533 Bacteria 3673
126 Ga0495640_0113335 3300046533 Bacteria 1769
127 Ga0495586_0000003 3300046535 Bacteria 192041
128 Ga0495586_0003690 3300046535 Bacteria 8208
129 Ga0495586_0005889 3300046535 Bacteria 6554
130 Ga0495645_0012694 3300046543 Bacteria 5942
131 Ga0495667_0020233 3300046559 Bacteria 4490
132 Ga0495659_0025013 3300046664 Bacteria 2041
133 Ga0495599_0009320 3300046678 Bacteria 5997
134 Ga0495599_0012652 3300046678 Bacteria 5204
135 Ga0495599_0023083 3300046678 Bacteria 3887
136 Ga0495658_0191947 3300046683 Bacteria 1270
137 Ga0495613_0003101 3300046689 Bacteria 12432
138 Ga0495624_0064464 3300046690 Bacteria 2290
139 Ga0495624_0076419 3300046690 Bacteria 2078
140 Ga0495581_0058047 3300047315 Bacteria 2234
141 Ga0495674_0000155 3300047319 Bacteria 52931
142 Ga0495674_0009457 3300047319 Bacteria 9260
143 Ga0495676_0029698 3300047321 Bacteria 4653
144 Ga0495676_0065247 3300047321 Bacteria 2827
145 Ga0495680_0185082 3300047322 Bacteria 1501
146 Ga0496115_0003257 3300048918 Bacteria 11652
147 Ga0496125_0062950 3300048928 Bacteria 2962
148 Ga0501031_0000333 3300049568 Bacteria 27321
149 Ga0501031_0025743 3300049568 Bacteria 3838
150 Ga0501032_0008713 3300049569 Bacteria 7387
151 Ga0501032_0095444 3300049569 Bacteria 1971
152 Ga0501033_0000689 3300049570 Bacteria 31303
153 Ga0501033_0075404 3300049570 Bacteria 2475
154 Ga0501037_0036331 3300049573 Bacteria 3631
155 Ga0501046_0242126 3300049580 Bacteria 1330
156 Ga0501080_0011887 3300049742 Bacteria 7976
157 Ga0501083_0114477 3300049744 Bacteria 1771
158 Ga0501035_0005151 3300049822 Bacteria 12361
159 Ga0501044_0000125 3300049823 Bacteria 92969
160 nmdc:mga05p37_48140_c1 3300050507 Bacteria 5244
161 nmdc:mga09592_116719_c1 3300050508 Bacteria 2291
162 nmdc:mga0qj67_27719_c1 3300050509 Bacteria 4392
163 nmdc:mga06r32_224398_c1 3300050510 Bacteria 1867
164 nmdc:mga08y16_195701_c1 3300050511 Bacteria 2095
165 nmdc:mga08y16_218722_c1 3300050511 Bacteria 1972
166 nmdc:mga08y16_385026_c1 3300050511 Bacteria 1437
167 nmdc:mga08y16_88020_c1 3300050511 Bacteria 3236

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046462 Ga0495651_0052387 Ga0495651_0052387_35_1168 362
2 3300046477 Ga0495664_0145719 Ga0495664_0145719_10_1143 362
3 3300014325 Ga0163163_10001224 Ga0163163_1000122413 375
4 3300046517 Ga0495630_0000066 Ga0495630_0000066_33397_34569 376
5 3300046533 Ga0495640_0113335 Ga0495640_0113335_511_1683 376
6 3300046535 Ga0495586_0000003 Ga0495586_0000003_50501_51673 376
7 3300047319 Ga0495674_0000155 Ga0495674_0000155_49076_50248 376
8 3300047321 Ga0495676_0029698 Ga0495676_0029698_1996_3168 376
9 3300042876 Ga0451577_0028240 Ga0451577_0028240_2081_3262 378
10 3300045051 Ga0451576_0010664 Ga0451576_0010664_6031_7209 378
11 3300050511 nmdc:mga08y16_195701_c1 nmdc:mga08y16_195701_c1_14_1195 378
12 3300005341 Ga0070691_10017984 Ga0070691_100179844 379
13 3300006844 Ga0075428_100003977 Ga0075428_1000039774 379
14 3300006846 Ga0075430_100031130 Ga0075430_1000311303 379
15 3300006880 Ga0075429_100147529 Ga0075429_1001475292 379
16 3300025910 Ga0207684_10170498 Ga0207684_101704982 379
17 3300028800 Ga0265338_10040095 Ga0265338_100400952 379
18 3300035725 Ga0373947_0043624 Ga0373947_0043624_1286_2464 379
19 3300046664 Ga0495659_0025013 Ga0495659_0025013_707_1885 379
20 3300046683 Ga0495658_0191947 Ga0495658_0191947_53_1231 379
21 3300049580 Ga0501046_0242126 Ga0501046_0242126_13_1206 379
22 3300050507 nmdc:mga05p37_48140_c1 nmdc:mga05p37_48140_c1_3328_4506 379
23 3300050509 nmdc:mga0qj67_27719_c1 nmdc:mga0qj67_27719_c1_1037_2215 379
24 3300005615 Ga0070702_100059582 Ga0070702_1000595822 386
25 3300005617 Ga0068859_100250058 Ga0068859_1002500581 386
26 3300005618 Ga0068864_100037392 Ga0068864_1000373925 386
27 3300005841 Ga0068863_100057370 Ga0068863_1000573702 386
28 3300006237 Ga0097621_100179679 Ga0097621_1001796791 386
29 3300006881 Ga0068865_100241598 Ga0068865_1002415982 386
30 3300006931 Ga0097620_100250040 Ga0097620_1002500402 386
31 3300028800 Ga0265338_10053411 Ga0265338_100534113 386
32 3300031456 Ga0307513_10225795 Ga0307513_102257952 386
33 3300035725 Ga0373947_0110337 Ga0373947_0110337_230_1432 386
34 3300049568 Ga0501031_0025743 Ga0501031_0025743_95_1339 386
35 3300049569 Ga0501032_0095444 Ga0501032_0095444_580_1824 386
36 3300049570 Ga0501033_0075404 Ga0501033_0075404_272_1516 386
37 3300049573 Ga0501037_0036331 Ga0501037_0036331_2062_3306 386
38 3300006852 Ga0075433_10240883 Ga0075433_102408831 390
39 3300009147 Ga0114129_10051990 Ga0114129_100519903 390
40 3300013297 Ga0157378_10133593 Ga0157378_101335932 390
41 3300013306 Ga0163162_10013016 Ga0163162_100130165 390
42 3300031251 Ga0265327_10005123 Ga0265327_100051237 390
43 3300035083 Ga0373926_0013001 Ga0373926_0013001_1214_2425 390
44 3300035170 Ga0373943_0044611 Ga0373943_0044611_185_1396 390
45 3300035695 Ga0373927_0038798 Ga0373927_0038798_934_2145 390
46 3300037068 Ga0373925_0219364 Ga0373925_0219364_284_1495 390
47 iso_pu_bacteria 2916178963 2916181749 390
48 3300005841 Ga0068863_100051033 Ga0068863_1000510333 391
49 3300048928 Ga0496125_0062950 Ga0496125_0062950_692_2032 391
50 3300035119 Ga0373956_0003041 Ga0373956_0003041_1005_2246 392
51 3300036401 Ga0373937_0012432 Ga0373937_0012432_4701_5942 392
52 3300046514 Ga0495618_0014197 Ga0495618_0014197_2880_4121 392
53 3300046517 Ga0495630_0013060 Ga0495630_0013060_742_1983 392
54 3300046533 Ga0495640_0018566 Ga0495640_0018566_561_1802 392
55 3300046535 Ga0495586_0005889 Ga0495586_0005889_5173_6414 392
56 3300046559 Ga0495667_0020233 Ga0495667_0020233_147_1388 392
57 3300046689 Ga0495613_0003101 Ga0495613_0003101_5015_6256 392
58 3300036712 Ga0316584_0079682 Ga0316584_0079682_814_2037 394
59 3300036712 Ga0316584_0187736 Ga0316584_0187736_214_1437 394
60 3300046690 Ga0495624_0076419 Ga0495624_0076419_70_1305 394
61 3300039093 Ga0400489_18393 Ga0400489_18393_4087_5340 395
62 3300005340 Ga0070689_100009094 Ga0070689_1000090945 396
63 3300006880 Ga0075429_100223599 Ga0075429_1002235991 396
64 3300009094 Ga0111539_10044611 Ga0111539_100446114 396
65 3300013102 Ga0157371_10121818 Ga0157371_101218182 396
66 3300025936 Ga0207670_10007862 Ga0207670_100078623 396
67 3300028563 Ga0265319_1000007 Ga0265319_1000007110 396
68 3300031247 Ga0265340_10028285 Ga0265340_100282852 396
69 3300031595 Ga0265313_10001008 Ga0265313_100010089 396
70 3300045051 Ga0451576_0000098 Ga0451576_0000098_142462_143685 396
71 3300045051 Ga0451576_0131778 Ga0451576_0131778_815_2050 396
72 3300050508 nmdc:mga09592_116719_c1 nmdc:mga09592_116719_c1_769_2004 396
73 3300005335 Ga0070666_10021366 Ga0070666_100213663 397
74 3300005614 Ga0068856_100000017 Ga0068856_10000001727 397
75 3300005618 Ga0068864_100299492 Ga0068864_1002994922 397
76 3300005937 Ga0081455_10059326 Ga0081455_100593263 397
77 3300006844 Ga0075428_100004534 Ga0075428_10000453410 397
78 3300009093 Ga0105240_10002804 Ga0105240_1000280413 397
79 3300009094 Ga0111539_10027302 Ga0111539_100273026 397
80 3300009551 Ga0105238_10050260 Ga0105238_100502604 397
81 3300013308 Ga0157375_10000027 Ga0157375_10000027123 397
82 3300014325 Ga0163163_10000194 Ga0163163_1000019426 397
83 3300025913 Ga0207695_10047059 Ga0207695_100470592 397
84 3300025924 Ga0207694_10027079 Ga0207694_100270792 397
85 3300025936 Ga0207670_10140033 Ga0207670_101400332 397
86 3300026078 Ga0207702_10000781 Ga0207702_1000078119 397
87 3300026095 Ga0207676_10187061 Ga0207676_101870612 397
88 3300027907 Ga0207428_10076941 Ga0207428_100769412 397
89 3300028800 Ga0265338_10000710 Ga0265338_1000071026 397
90 3300028800 Ga0265338_10027892 Ga0265338_100278924 397
91 3300028800 Ga0265338_10093254 Ga0265338_100932542 397
92 3300029957 Ga0265324_10000792 Ga0265324_1000079216 397
93 3300029957 Ga0265324_10014287 Ga0265324_100142872 397
94 3300031251 Ga0265327_10004378 Ga0265327_1000437810 397
95 3300031344 Ga0265316_10230446 Ga0265316_102304461 397
96 3300031711 Ga0265314_10049534 Ga0265314_100495343 397
97 3300031712 Ga0265342_10048277 Ga0265342_100482771 397
98 3300034816 Ga0373930_0002319 Ga0373930_0002319_469_1707 397
99 3300035084 Ga0373928_0000918 Ga0373928_0000918_2924_4162 397
100 3300035085 Ga0373929_0002381 Ga0373929_0002381_1399_2637 397
101 3300035089 Ga0373944_0000122 Ga0373944_0000122_758_1996 397
102 3300035090 Ga0373949_0004794 Ga0373949_0004794_605_1843 397
103 3300035112 Ga0373932_0000001 Ga0373932_0000001_1361397_1362635 397
104 3300035116 Ga0373945_0050701 Ga0373945_0050701_152_1390 397
105 3300035171 Ga0373946_0023692 Ga0373946_0023692_753_1991 397
106 3300035242 Ga0373962_0000033 Ga0373962_0000033_31511_32749 397
107 3300035691 Ga0373931_0000002 Ga0373931_0000002_132763_134001 397
108 3300035692 Ga0373935_0026101 Ga0373935_0026101_1729_2964 397
109 3300035695 Ga0373927_0017258 Ga0373927_0017258_3044_4282 397
110 3300035695 Ga0373927_0023879 Ga0373927_0023879_2630_3865 397
111 3300035725 Ga0373947_0005330 Ga0373947_0005330_5461_6696 397
112 3300037068 Ga0373925_0000121 Ga0373925_0000121_66524_67762 397
113 3300037068 Ga0373925_0006780 Ga0373925_0006780_4708_5943 397
114 3300045051 Ga0451576_0088197 Ga0451576_0088197_1930_3165 397
115 3300046454 Ga0495592_0000485 Ga0495592_0000485_25050_26285 397
116 3300046454 Ga0495592_0026467 Ga0495592_0026467_779_2017 397
117 3300046476 Ga0495662_0094434 Ga0495662_0094434_39_1274 397
118 3300046516 Ga0495628_0010532 Ga0495628_0010532_5400_6635 397
119 3300046516 Ga0495628_0086211 Ga0495628_0086211_611_1849 397
120 3300046526 Ga0495666_0019774 Ga0495666_0019774_1041_2276 397
121 3300046529 Ga0495652_0128045 Ga0495652_0128045_576_1814 397
122 3300046533 Ga0495640_0033127 Ga0495640_0033127_2188_3423 397
123 3300046535 Ga0495586_0003690 Ga0495586_0003690_1574_2809 397
124 3300046543 Ga0495645_0012694 Ga0495645_0012694_280_1515 397
125 3300046678 Ga0495599_0009320 Ga0495599_0009320_2222_3457 397
126 3300046678 Ga0495599_0012652 Ga0495599_0012652_1582_2817 397
127 3300046678 Ga0495599_0023083 Ga0495599_0023083_360_1598 397
128 3300046690 Ga0495624_0064464 Ga0495624_0064464_1044_2279 397
129 3300047315 Ga0495581_0058047 Ga0495581_0058047_477_1712 397
130 3300047319 Ga0495674_0009457 Ga0495674_0009457_7242_8477 397
131 3300047321 Ga0495676_0065247 Ga0495676_0065247_631_1866 397
132 3300048918 Ga0496115_0003257 Ga0496115_0003257_895_2133 397
133 3300050510 nmdc:mga06r32_224398_c1 nmdc:mga06r32_224398_c1_176_1414 397
134 3300050511 nmdc:mga08y16_385026_c1 nmdc:mga08y16_385026_c1_169_1407 397
135 3300050511 nmdc:mga08y16_88020_c1 nmdc:mga08y16_88020_c1_381_1619 397
136 3300005330 Ga0070690_100018906 Ga0070690_1000189063 398
137 3300005617 Ga0068859_100017566 Ga0068859_1000175664 398
138 3300006931 Ga0097620_100017566 Ga0097620_1000175664 398
139 3300009551 Ga0105238_10022199 Ga0105238_100221997 398
140 3300028556 Ga0265337_1004981 Ga0265337_10049812 398
141 3300028563 Ga0265319_1021320 Ga0265319_10213202 398
142 3300028577 Ga0265318_10050275 Ga0265318_100502751 398
143 3300028653 Ga0265323_10001512 Ga0265323_100015126 398
144 3300028800 Ga0265338_10000347 Ga0265338_1000034739 398
145 3300028800 Ga0265338_10000554 Ga0265338_1000055440 398
146 3300028800 Ga0265338_10011633 Ga0265338_100116335 398
147 3300029957 Ga0265324_10000554 Ga0265324_1000055412 398
148 3300029957 Ga0265324_10014293 Ga0265324_100142932 398
149 3300031240 Ga0265320_10010981 Ga0265320_100109813 398
150 3300031240 Ga0265320_10013602 Ga0265320_100136023 398
151 3300031344 Ga0265316_10045130 Ga0265316_100451304 398
152 3300034957 Ga0373938_0005117 Ga0373938_0005117_80_1324 398
153 3300035695 Ga0373927_0012719 Ga0373927_0012719_2026_3270 398
154 3300042876 Ga0451577_0007538 Ga0451577_0007538_7488_8726 398
155 3300044712 Ga0453684_0003390 Ga0453684_0003390_29578_30816 398
156 3300045051 Ga0451576_0074407 Ga0451576_0074407_226_1464 398
157 3300049742 Ga0501080_0011887 Ga0501080_0011887_3940_5184 398
158 3300028666 Ga0265336_10017377 Ga0265336_100173772 399
159 3300050511 nmdc:mga08y16_218722_c1 nmdc:mga08y16_218722_c1_696_1946 402
160 3300049744 Ga0501083_0114477 Ga0501083_0114477_326_1582 404
161 3300042876 Ga0451577_0181379 Ga0451577_0181379_80_1345 407
162 3300047322 Ga0495680_0185082 Ga0495680_0185082_83_1396 418
163 3300049568 Ga0501031_0000333 Ga0501031_0000333_12885_14198 419
164 3300049569 Ga0501032_0008713 Ga0501032_0008713_4969_6282 419
165 3300049570 Ga0501033_0000689 Ga0501033_0000689_22624_23937 419
166 3300049822 Ga0501035_0005151 Ga0501035_0005151_1785_3098 419
167 3300049823 Ga0501044_0000125 Ga0501044_0000125_11587_12900 419
168 3300003320 rootH2_10002900 rootH2_1000290010 477

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00270

DEAD

DEAD/DEAH box helicase

50

216

0.95

PF00271

Helicase_C

Helicase conserved C-terminal domain

250

359

0.94

PF04851

ResIII

Type III restriction enzyme, res subunit

48

211

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4kbg-assembly1.cif.gz_A almost closed conformation of the helicase core of the rna helicase hera 0.9686 81 283
6aib-assembly1.cif.gz_A crystal structures of the n-terminal reca-like domain 1 of staphylococcus aureus dead-box cold shock rna helicase csha 0.9649 81 279
5gju-assembly1.cif.gz_A dead-box rna helicase 0.9647 79 281
2hjv-assembly2.cif.gz_B structure of the second domain (residues 207-368) of the bacillus subtilis yxin protein 0.9621 291 444
3ber-assembly1.cif.gz_A human dead-box rna-helicase ddx47, conserved domain i in complex with amp 0.9617 79 283
ID Description Score Start End Superfamily
af_P25888_1_211_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9751 80 282 3.40.50.300
af_Q5ACU6_326_519_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9741 289 444 3.40.50.300
af_A0A1D6GWC4_236_391_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9724 289 436 3.40.50.300
af_P21693_1_208_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.972 79 282 3.40.50.300
af_Q2FWH5_214_389_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9683 294 442 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A838TFF7-F1-model_v4 DEAD/DEAH box helicase 0.9907 98 269 GO:0003676
GO:0003724
GO:0005524
GO:0005829
AF-A0A0N4XHA5-F1-model_v4 RNA helicase (EC 3.6.4.13) 0.9786 80 276 GO:0003723
GO:0003724
GO:0005524
GO:0005829
GO:0016787
AF-A0A1I8AFQ6-F1-model_v4 Helicase ATP-binding domain-containing protein 0.9754 188 285 GO:0003676
GO:0004386
GO:0005524
GO:0016787
AF-A0A838TFF7-F1-model_v4 DEAD/DEAH box helicase 0.9739 98 269 GO:0003676
GO:0003724
GO:0005524
GO:0005829
AF-A0A099DCR4-F1-model_v4 deleted 0.9677 291 443

Feature Viewer

pLDDT pTM Quality
76.5 0.55 Medium
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Predicted Structure (AlphaFold2)

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