F254246

General Info

Members Datasets Scaffolds Average Seq Length
169 106 169 656

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100018900|Ga0070706_1000189007
Length 722
Sequence LRRRCSLSPHSCPNSRTSSISLRKSSQIRIVFFLALNDDQQCIIGLALNGFSESSARSRVQQHIASRLLLKLLKTFAWKSLLFSLALAFLAGAATCAIWGAGLIDSLQAAFVVNVGRGEVPLQAPQFLLGLLLIVAISTSAGFFVSRAGARRSFLILGIGFLAMASASLLTSRYLKVDILFAPMALGAMGAVFVVQLHRLWRIDSVLTHHVNEIAARAETGEESQTRLTSGLKLLQTTLPLEEAVVFQPNEVGALIPCARLRSNPSGALEPGRNTVWRRLIELCDQAVKTGQMVVAPIGQIDSLESVAMPLLHEGRAVGVLLLRLSERIDESDRRLLAAVGSQVARNLQREEARKKTRVSSLPAFISARTSGMRLQAFDVISGTLTEHRFGAQVLAEASDGYAIAYLDGTLAYVNPAMLWAARMSEAEAQKSDLFGLLDRFRSGVFDEPSIAVRRVLQSGEPYLRELKFPEQNTAAEPLCFAIRVRDVTRMKEFEQLKSDMISLMSHELRTPLTSINGFSELLSLDDKIPKESREFLQIISNESQRMSRMIDTFLSVTQLERADKKEVTKTALRLDEVVRETINTMQPVAKKKRIRLIEQANGRIPPVAADKSLTTQVITKLLDNAIKYSPERTAVTISTVLEADTVRVVIEDRGYGIPAESIDRIWEKFYRVARDGQEKDEESTGLGLAFVKEVVEQHGGTVAVESEVGRGSKFSFALPRL

Samples

Sample ID Description Type Environment
1 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
2 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
17 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
18 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
37 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
38 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
39 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
44 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
51 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
58 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
94 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
95 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
96 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
97 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
98 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
99 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
100 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
101 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
104 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
105 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.59
Nodule 0
Rhizoplane 0.59
Rhizosphere 98.22
Stem 0
Stem Tuber 0
Unclassified 0.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24748J21848_1000006 3300002074 Bacteria 212677
2 JGI24034J26672_10000002 3300002239 Bacteria 925353
3 Ga0065714_10065040 3300005288 Bacteria 13614
4 Ga0065712_10068164 3300005290 Bacteria 13616
5 Ga0065715_10002461 3300005293 Bacteria 8086
6 Ga0065707_10088066 3300005295 Bacteria 4792
7 Ga0070690_100000578 3300005330 Bacteria 18438
8 Ga0070670_100002764 3300005331 Bacteria 14496
9 Ga0070670_100064874 3300005331 Unclassified 3133
10 Ga0068869_100087663 3300005334 Bacteria 2335
11 Ga0070682_100000219 3300005337 Bacteria 42148
12 Ga0070689_100001564 3300005340 Bacteria 14589
13 Ga0070689_100005195 3300005340 Bacteria 8863
14 Ga0070692_10041388 3300005345 Bacteria 2360
15 Ga0070668_100000583 3300005347 Bacteria 24497
16 Ga0070669_100011374 3300005353 Bacteria 6318
17 Ga0070669_100015559 3300005353 Bacteria 5425
18 Ga0070671_100006179 3300005355 Bacteria 9541
19 Ga0070703_10000918 3300005406 Bacteria 9376
20 Ga0070703_10006771 3300005406 Bacteria 3215
21 Ga0070694_100009070 3300005444 Bacteria 6098
22 Ga0070708_100038386 3300005445 Bacteria 4184
23 Ga0070706_100000001 3300005467 Bacteria 342302
24 Ga0070706_100018900 3300005467 Bacteria 6356
25 Ga0070706_100022443 3300005467 Bacteria 5809
26 Ga0070706_100031099 3300005467 Bacteria 4923
27 Ga0070707_100001847 3300005468 Bacteria 20335
28 Ga0070707_100004009 3300005468 Bacteria 13848
29 Ga0070707_100072282 3300005468 Bacteria 3324
30 Ga0070698_100000990 3300005471 Bacteria 31268
31 Ga0070698_100002895 3300005471 Bacteria 18893
32 Ga0070698_100006855 3300005471 Bacteria 12342
33 Ga0070698_100012523 3300005471 Bacteria 8981
34 Ga0070699_100001073 3300005518 Bacteria 25482
35 Ga0070699_100019594 3300005518 Bacteria 5829
36 Ga0070699_100023956 3300005518 Bacteria 5261
37 Ga0070697_100000240 3300005536 Bacteria 44334
38 Ga0070697_100002250 3300005536 Bacteria 14806
39 Ga0070697_100002381 3300005536 Bacteria 14471
40 Ga0070697_100021435 3300005536 Bacteria 5119
41 Ga0070697_100032811 3300005536 Unclassified 4181
42 Ga0070695_100009040 3300005545 Bacteria 5922
43 Ga0070696_100015577 3300005546 Bacteria 5108
44 Ga0070696_100020568 3300005546 Bacteria 4471
45 Ga0070693_100042224 3300005547 Unclassified 2569
46 Ga0068859_100034231 3300005617 Bacteria 5099
47 Ga0068859_100148055 3300005617 Unclassified 2423
48 Ga0068861_100001090 3300005719 Bacteria 16784
49 Ga0068870_10005192 3300005840 Bacteria 5672
50 Ga0068858_100000099 3300005842 Bacteria 90483
51 Ga0068858_100076281 3300005842 Bacteria 3113
52 Ga0068860_100014403 3300005843 Bacteria 7748
53 Ga0068862_100005377 3300005844 Bacteria 10716
54 Ga0068862_100017330 3300005844 Bacteria 5997
55 Ga0070716_100000001 3300006173 Bacteria 400668
56 Ga0075428_100073022 3300006844 Bacteria 3746
57 Ga0075431_100042821 3300006847 Bacteria 4670
58 Ga0075429_100024121 3300006880 Bacteria 5275
59 Ga0075429_100039670 3300006880 Bacteria 4097
60 Ga0068865_100021874 3300006881 Bacteria 4164
61 Ga0075436_100000005 3300006914 Bacteria 360336
62 Ga0097620_100034231 3300006931 Bacteria 5099
63 Ga0097620_100148052 3300006931 Unclassified 2423
64 Ga0075435_100000633 3300007076 Bacteria 21597
65 Ga0099794_10001571 3300007265 Bacteria 8047
66 Ga0111539_10002533 3300009094 Bacteria 24203
67 Ga0105247_10000001 3300009101 Bacteria 739726
68 Ga0114129_10155711 3300009147 Bacteria 3125
69 Ga0114129_10296835 3300009147 Bacteria 2155
70 Ga0105243_10000019 3300009148 Bacteria 217107
71 Ga0105243_10021740 3300009148 Bacteria 4871
72 Ga0105242_10000212 3300009176 Bacteria 45450
73 Ga0105242_10001692 3300009176 Bacteria 17474
74 Ga0105242_10005617 3300009176 Bacteria 9678
75 Ga0105248_10026880 3300009177 Bacteria 6400
76 Ga0105248_10111765 3300009177 Bacteria 3081
77 Ga0105249_10000018 3300009553 Bacteria 275907
78 Ga0105249_10024223 3300009553 Bacteria 5454
79 Ga0105249_10050717 3300009553 Unclassified 3783
80 Ga0105249_10065032 3300009553 Bacteria 3354
81 Ga0105239_10042929 3300010375 Bacteria 4955
82 Ga0105246_10029030 3300011119 Bacteria 3638
83 Ga0157373_10000652 3300013100 Bacteria 27251
84 Ga0157378_10000176 3300013297 Bacteria 60614
85 Ga0157378_10005219 3300013297 Bacteria 11405
86 Ga0157378_10017352 3300013297 Bacteria 6315
87 Ga0157378_10018782 3300013297 Bacteria 6078
88 Ga0157378_10031480 3300013297 Bacteria 4685
89 Ga0163162_10000001 3300013306 Bacteria 751833
90 Ga0163162_10007785 3300013306 Bacteria 10445
91 Ga0163162_10008233 3300013306 Bacteria 10177
92 Ga0163162_10156460 3300013306 Bacteria 2399
93 Ga0157375_10004969 3300013308 Bacteria 11566
94 Ga0157375_10029247 3300013308 Bacteria 5179
95 Ga0157375_10058931 3300013308 Bacteria 3801
96 Ga0157375_10060003 3300013308 Bacteria 3770
97 Ga0163163_10019452 3300014325 Bacteria 6378
98 Ga0157380_10007551 3300014326 Bacteria 7725
99 Ga0157380_10063093 3300014326 Bacteria 2970
100 Ga0163161_10010525 3300017792 Bacteria 6407
101 Ga0207653_10000319 3300025885 Bacteria 26455
102 Ga0207710_10000003 3300025900 Bacteria 1071597
103 Ga0207643_10004492 3300025908 Bacteria 7498
104 Ga0207684_10000286 3300025910 Bacteria 72634
105 Ga0207684_10007864 3300025910 Bacteria 9535
106 Ga0207684_10007946 3300025910 Bacteria 9480
107 Ga0207646_10000534 3300025922 Bacteria 50683
108 Ga0207646_10002960 3300025922 Bacteria 19662
109 Ga0207646_10024940 3300025922 Bacteria 5471
110 Ga0207681_10004877 3300025923 Bacteria 8245
111 Ga0207681_10027865 3300025923 Bacteria 3657
112 Ga0207650_10000632 3300025925 Bacteria 28069
113 Ga0207644_10000559 3300025931 Bacteria 23894
114 Ga0207644_10011288 3300025931 Bacteria 5905
115 Ga0207706_10043413 3300025933 Bacteria 3984
116 Ga0207686_10000002 3300025934 Bacteria 453961
117 Ga0207686_10000177 3300025934 Bacteria 49115
118 Ga0207686_10001010 3300025934 Bacteria 16662
119 Ga0207709_10000027 3300025935 Bacteria 339731
120 Ga0207709_10005284 3300025935 Bacteria 7346
121 Ga0207670_10001930 3300025936 Bacteria 10857
122 Ga0207665_10000016 3300025939 Bacteria 132853
123 Ga0207711_10005180 3300025941 Bacteria 11046
124 Ga0207711_10008522 3300025941 Bacteria 8577
125 Ga0207689_10004978 3300025942 Bacteria 11966
126 Ga0207689_10027707 3300025942 Bacteria 4742
127 Ga0207712_10000081 3300025961 Bacteria 114043
128 Ga0207712_10014505 3300025961 Bacteria 5072
129 Ga0207668_10001341 3300025972 Bacteria 14595
130 Ga0207640_10048844 3300025981 Bacteria 2738
131 Ga0207677_10038273 3300026023 Bacteria 3144
132 Ga0207703_10000336 3300026035 Bacteria 51189
133 Ga0207708_10016155 3300026075 Bacteria 5607
134 Ga0207641_10013061 3300026088 Bacteria 6811
135 Ga0207648_10064621 3300026089 Unclassified 3189
136 Ga0207648_10077988 3300026089 Bacteria 2889
137 Ga0207676_10001208 3300026095 Bacteria 19341
138 Ga0207676_10069877 3300026095 Bacteria 2814
139 Ga0207675_100003461 3300026118 Bacteria 15434
140 Ga0207675_100005098 3300026118 Bacteria 12638
141 Ga0207675_100029645 3300026118 Bacteria 5095
142 Ga0207675_100128985 3300026118 Bacteria 2397
143 Ga0207428_10004251 3300027907 Bacteria 13703
144 Ga0268265_10044688 3300028380 Unclassified 3300
145 Ga0268265_10053880 3300028380 Bacteria 3049
146 Ga0268265_10064786 3300028380 Bacteria 2817
147 Ga0268264_10027903 3300028381 Bacteria 4616
148 Ga0307408_100009191 3300031548 Bacteria 6517
149 Ga0307405_10041148 3300031731 Bacteria 2803
150 Ga0307411_10016621 3300032005 Bacteria 4168
151 Ga0242420_001149 3300038996 Bacteria 3424
152 Ga0436365_0380808 3300039437 Bacteria 4272
153 Ga0439458_0002545 3300042157 Bacteria 4413
154 Ga0451576_0015147 3300045051 Bacteria 8556
155 Ga0495663_0000145 3300046525 Bacteria 29112
156 Ga0495621_0000169 3300046539 Bacteria 14774
157 Ga0495621_0024186 3300046539 Bacteria 2027
158 Ga0496106_0003738 3300048909 Bacteria 11354
159 Ga0501296_001020 3300049519 Bacteria 2796
160 Ga0501207_000903 3300049654 Unclassified 3570
161 Ga0501217_003282 3300049661 Unclassified 3259
162 Ga0501223_003739 3300049663 Unclassified 3286
163 Ga0501224_000628 3300049664 Bacteria 4351
164 Ga0501227_003722 3300049665 Unclassified 3301
165 nmdc:mga05p37_127833_c1 3300050507 Bacteria 3119
166 nmdc:mga09592_17595_c1 3300050508 Bacteria 5856
167 nmdc:mga0rr50_233_c1 3300050513 Bacteria 30141
168 nmdc:mga08x19_5_c1 3300050514 Bacteria 464292
169 Ga0500616_0012662 3300053153 Bacteria 4931

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005288 Ga0065714_10065040 Ga0065714_100650408 575
2 3300005290 Ga0065712_10068164 Ga0065712_100681648 575
3 3300005293 Ga0065715_10002461 Ga0065715_100024617 575
4 3300005546 Ga0070696_100015577 Ga0070696_1000155775 589
5 3300050507 nmdc:mga05p37_127833_c1 nmdc:mga05p37_127833_c1_87_1871 589
6 3300025941 Ga0207711_10008522 Ga0207711_100085224 590
7 3300005843 Ga0068860_100014403 Ga0068860_1000144032 598
8 3300028381 Ga0268264_10027903 Ga0268264_100279033 598
9 3300046539 Ga0495621_0024186 Ga0495621_0024186_69_1919 598
10 3300009177 Ga0105248_10026880 Ga0105248_100268804 601
11 3300049519 Ga0501296_001020 Ga0501296_001020_959_2785 602
12 3300005546 Ga0070696_100020568 Ga0070696_1000205682 606
13 3300013308 Ga0157375_10060003 Ga0157375_100600034 606
14 3300042157 Ga0439458_0002545 Ga0439458_0002545_793_2730 606
15 3300005340 Ga0070689_100001564 Ga0070689_1000015648 610
16 3300009147 Ga0114129_10155711 Ga0114129_101557112 610
17 3300025936 Ga0207670_10001930 Ga0207670_100019308 610
18 3300026088 Ga0207641_10013061 Ga0207641_100130617 610
19 3300039437 Ga0436365_0380808 Ga0436365_0380808_891_2903 612
20 3300006880 Ga0075429_100024121 Ga0075429_1000241213 618
21 3300050508 nmdc:mga09592_17595_c1 nmdc:mga09592_17595_c1_2550_4547 618
22 3300005330 Ga0070690_100000578 Ga0070690_10000057813 620
23 3300005345 Ga0070692_10041388 Ga0070692_100413882 620
24 3300005844 Ga0068862_100005377 Ga0068862_10000537710 620
25 3300013308 Ga0157375_10004969 Ga0157375_100049699 620
26 3300026118 Ga0207675_100128985 Ga0207675_1001289851 620
27 3300005518 Ga0070699_100019594 Ga0070699_1000195942 622
28 3300005617 Ga0068859_100148055 Ga0068859_1001480552 623
29 3300006931 Ga0097620_100148052 Ga0097620_1001480522 623
30 3300025908 Ga0207643_10004492 Ga0207643_100044927 623
31 3300025961 Ga0207712_10000081 Ga0207712_1000008184 623
32 3300025972 Ga0207668_10001341 Ga0207668_100013416 623
33 3300026095 Ga0207676_10001208 Ga0207676_100012085 623
34 3300005844 Ga0068862_100017330 Ga0068862_1000173305 625
35 3300006914 Ga0075436_100000005 Ga0075436_10000000515 625
36 3300007076 Ga0075435_100000633 Ga0075435_10000063310 625
37 3300025981 Ga0207640_10048844 Ga0207640_100488442 625
38 3300028380 Ga0268265_10053880 Ga0268265_100538802 625
39 3300050513 nmdc:mga0rr50_233_c1 nmdc:mga0rr50_233_c1_13979_16042 625
40 3300050514 nmdc:mga08x19_5_c1 nmdc:mga08x19_5_c1_113448_115511 625
41 3300026089 Ga0207648_10077988 Ga0207648_100779882 626
42 3300005331 Ga0070670_100064874 Ga0070670_1000648742 627
43 3300005406 Ga0070703_10006771 Ga0070703_100067712 630
44 3300005536 Ga0070697_100002381 Ga0070697_10000238113 631
45 3300006173 Ga0070716_100000001 Ga0070716_100000001115 631
46 3300025939 Ga0207665_10000016 Ga0207665_10000016105 631
47 3300026095 Ga0207676_10069877 Ga0207676_100698772 631
48 3300025933 Ga0207706_10043413 Ga0207706_100434132 633
49 3300005617 Ga0068859_100034231 Ga0068859_1000342314 634
50 3300006931 Ga0097620_100034231 Ga0097620_1000342312 634
51 3300031548 Ga0307408_100009191 Ga0307408_1000091914 634
52 3300032005 Ga0307411_10016621 Ga0307411_100166214 634
53 3300049654 Ga0501207_000903 Ga0501207_000903_772_2721 634
54 3300049661 Ga0501217_003282 Ga0501217_003282_1077_3026 634
55 3300049663 Ga0501223_003739 Ga0501223_003739_1276_3225 634
56 3300049664 Ga0501224_000628 Ga0501224_000628_769_2718 634
57 3300049665 Ga0501227_003722 Ga0501227_003722_63_2012 634
58 3300005337 Ga0070682_100000219 Ga0070682_10000021938 635
59 3300005445 Ga0070708_100038386 Ga0070708_1000383862 637
60 3300005467 Ga0070706_100022443 Ga0070706_1000224436 637
61 3300005468 Ga0070707_100072282 Ga0070707_1000722823 637
62 3300005471 Ga0070698_100002895 Ga0070698_1000028952 637
63 3300005518 Ga0070699_100001073 Ga0070699_10000107315 637
64 3300005536 Ga0070697_100002250 Ga0070697_1000022508 637
65 3300025910 Ga0207684_10007946 Ga0207684_100079462 637
66 3300005467 Ga0070706_100000001 Ga0070706_100000001254 638
67 3300009147 Ga0114129_10296835 Ga0114129_102968351 638
68 3300025910 Ga0207684_10000286 Ga0207684_1000028614 638
69 3300005340 Ga0070689_100005195 Ga0070689_1000051955 639
70 3300005353 Ga0070669_100011374 Ga0070669_1000113744 639
71 3300025923 Ga0207681_10004877 Ga0207681_100048774 639
72 3300005406 Ga0070703_10000918 Ga0070703_100009186 640
73 3300005536 Ga0070697_100032811 Ga0070697_1000328113 640
74 3300025885 Ga0207653_10000319 Ga0207653_1000031919 640
75 3300025931 Ga0207644_10000559 Ga0207644_100005593 640
76 3300005334 Ga0068869_100087663 Ga0068869_1000876631 641
77 3300005467 Ga0070706_100018900 Ga0070706_1000189007 641
78 3300005468 Ga0070707_100004009 Ga0070707_1000040097 641
79 3300005471 Ga0070698_100006855 Ga0070698_1000068557 641
80 3300005536 Ga0070697_100021435 Ga0070697_1000214355 641
81 3300025910 Ga0207684_10007864 Ga0207684_100078649 641
82 3300025922 Ga0207646_10002960 Ga0207646_100029607 641
83 3300025942 Ga0207689_10027707 Ga0207689_100277074 641
84 3300005355 Ga0070671_100006179 Ga0070671_1000061794 642
85 3300025931 Ga0207644_10011288 Ga0207644_100112882 642
86 3300005467 Ga0070706_100031099 Ga0070706_1000310995 643
87 3300005468 Ga0070707_100001847 Ga0070707_10000184715 643
88 3300025922 Ga0207646_10000534 Ga0207646_1000053416 643
89 3300005353 Ga0070669_100015559 Ga0070669_1000155595 645
90 3300005444 Ga0070694_100009070 Ga0070694_1000090703 645
91 3300005719 Ga0068861_100001090 Ga0068861_1000010909 645
92 3300005840 Ga0068870_10005192 Ga0068870_100051923 645
93 3300009553 Ga0105249_10065032 Ga0105249_100650323 645
94 3300011119 Ga0105246_10029030 Ga0105246_100290302 645
95 3300013100 Ga0157373_10000652 Ga0157373_1000065221 645
96 3300013297 Ga0157378_10018782 Ga0157378_100187826 645
97 3300013306 Ga0163162_10156460 Ga0163162_101564602 645
98 3300014326 Ga0157380_10007551 Ga0157380_100075514 645
99 3300014326 Ga0157380_10063093 Ga0157380_100630931 645
100 3300017792 Ga0163161_10010525 Ga0163161_100105252 645
101 3300025922 Ga0207646_10024940 Ga0207646_100249403 645
102 3300025923 Ga0207681_10027865 Ga0207681_100278652 645
103 3300025961 Ga0207712_10014505 Ga0207712_100145056 645
104 3300026075 Ga0207708_10016155 Ga0207708_100161552 645
105 3300026089 Ga0207648_10064621 Ga0207648_100646214 645
106 3300026118 Ga0207675_100005098 Ga0207675_1000050985 645
107 3300026118 Ga0207675_100029645 Ga0207675_1000296451 645
108 3300028380 Ga0268265_10064786 Ga0268265_100647861 645
109 3300053153 Ga0500616_0012662 Ga0500616_0012662_458_2467 645
110 3300006847 Ga0075431_100042821 Ga0075431_1000428212 646
111 3300013297 Ga0157378_10017352 Ga0157378_100173523 646
112 3300013308 Ga0157375_10058931 Ga0157375_100589312 647
113 3300025934 Ga0207686_10000002 Ga0207686_1000000243 647
114 3300005471 Ga0070698_100012523 Ga0070698_1000125234 648
115 3300007265 Ga0099794_10001571 Ga0099794_100015717 648
116 3300009553 Ga0105249_10000018 Ga0105249_10000018154 648
117 3300013306 Ga0163162_10000001 Ga0163162_10000001188 648
118 3300014325 Ga0163163_10019452 Ga0163163_100194523 648
119 3300005295 Ga0065707_10088066 Ga0065707_100880665 649
120 3300005518 Ga0070699_100023956 Ga0070699_1000239564 649
121 3300005536 Ga0070697_100000240 Ga0070697_10000024017 649
122 3300009177 Ga0105248_10111765 Ga0105248_101117652 649
123 3300013297 Ga0157378_10005219 Ga0157378_100052197 649
124 3300025941 Ga0207711_10005180 Ga0207711_100051802 649
125 3300031731 Ga0307405_10041148 Ga0307405_100411482 649
126 3300005545 Ga0070695_100009040 Ga0070695_1000090402 650
127 3300005547 Ga0070693_100042224 Ga0070693_1000422241 650
128 3300005842 Ga0068858_100000099 Ga0068858_10000009975 650
129 3300005842 Ga0068858_100076281 Ga0068858_1000762813 650
130 3300009101 Ga0105247_10000001 Ga0105247_10000001181 650
131 3300009148 Ga0105243_10021740 Ga0105243_100217402 650
132 3300009176 Ga0105242_10001692 Ga0105242_1000169210 650
133 3300009176 Ga0105242_10005617 Ga0105242_100056176 650
134 3300009553 Ga0105249_10024223 Ga0105249_100242232 650
135 3300009553 Ga0105249_10050717 Ga0105249_100507171 650
136 3300010375 Ga0105239_10042929 Ga0105239_100429293 650
137 3300013297 Ga0157378_10000176 Ga0157378_1000017645 650
138 3300013297 Ga0157378_10031480 Ga0157378_100314801 650
139 3300013306 Ga0163162_10008233 Ga0163162_100082332 650
140 3300013308 Ga0157375_10029247 Ga0157375_100292473 650
141 3300025900 Ga0207710_10000003 Ga0207710_10000003456 650
142 3300025934 Ga0207686_10000177 Ga0207686_1000017714 650
143 3300025934 Ga0207686_10001010 Ga0207686_100010106 650
144 3300025935 Ga0207709_10005284 Ga0207709_100052842 650
145 3300025942 Ga0207689_10004978 Ga0207689_1000497810 650
146 3300026035 Ga0207703_10000336 Ga0207703_1000033639 650
147 3300046525 Ga0495663_0000145 Ga0495663_0000145_3219_5237 650
148 3300046539 Ga0495621_0000169 Ga0495621_0000169_10500_12518 650
149 3300002074 JGI24748J21848_1000006 JGI24748J21848_10000061 651
150 3300002239 JGI24034J26672_10000002 JGI24034J26672_10000002468 651
151 3300005331 Ga0070670_100002764 Ga0070670_10000276412 651
152 3300005347 Ga0070668_100000583 Ga0070668_1000005839 651
153 3300005471 Ga0070698_100000990 Ga0070698_1000009901 651
154 3300006844 Ga0075428_100073022 Ga0075428_1000730222 651
155 3300006880 Ga0075429_100039670 Ga0075429_1000396702 651
156 3300006881 Ga0068865_100021874 Ga0068865_1000218743 651
157 3300009094 Ga0111539_10002533 Ga0111539_100025336 651
158 3300009148 Ga0105243_10000019 Ga0105243_10000019142 651
159 3300009176 Ga0105242_10000212 Ga0105242_100002127 651
160 3300013306 Ga0163162_10007785 Ga0163162_100077853 651
161 3300025925 Ga0207650_10000632 Ga0207650_1000063221 651
162 3300025935 Ga0207709_10000027 Ga0207709_10000027130 651
163 3300026023 Ga0207677_10038273 Ga0207677_100382733 651
164 3300026118 Ga0207675_100003461 Ga0207675_1000034614 651
165 3300027907 Ga0207428_10004251 Ga0207428_100042517 651
166 3300028380 Ga0268265_10044688 Ga0268265_100446882 651
167 3300038996 Ga0242420_001149 Ga0242420_001149_453_2477 651
168 3300045051 Ga0451576_0015147 Ga0451576_0015147_6397_8421 651
169 3300048909 Ga0496106_0003738 Ga0496106_0003738_627_2651 651

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00512

HisKA

His Kinase A (phospho-acceptor) domain

497

563

0.93

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

610

722

0.93

PF01590

GAF

GAF domain

223

348

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
8dwz-assembly1.cif.gz_A ca domain of vansa histidine kinase, 7 kev data 0.9094 500 651
8dwz-assembly1.cif.gz_A ca domain of vansa histidine kinase, 7 kev data 0.9029 500 651
3a0y-assembly1.cif.gz_A catalytic domain of histidine kinase thka (tm1359) (nucleotide free form 3: 1,2-propanediol, orthorombic) 0.8748 500 650
3a0z-assembly1.cif.gz_A catalytic domain of histidine kinase thka (tm1359) (nucleotide free form 4: isopropanol, orthorombic) 0.8704 495 650
8dx0-assembly2.cif.gz_B vansc ca domain 0.8587 495 651
ID Description Score Start End Superfamily
af_P14377_310_462_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8955 498 649 3.30.565.10
4ew8A01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.8744 419 492 1.10.287.130
af_Q06067_453_606_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.868 495 649 3.30.565.10
4jauA02 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8589 498 650 3.30.565.10
af_P39453_511_667_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8562 494 649 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A4Q3TGC4-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8871 507 649 GO:0000155
GO:0005524
AF-A0A388PF32-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8825 497 650 GO:0016301
AF-A0A3D5FLF5-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8644 500 651 GO:0016772
AF-A0A352UJY2-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8546 523 651 GO:0000155
GO:0005886
GO:0009927
AF-A0A7Y5CG97-F1-model_v4 deleted 0.8505 494 651

Feature Viewer

pLDDT pTM Quality
78.77 0.52 Medium
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Predicted Structure (AlphaFold2)

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