F255045
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 169 | 127 | 164 | 471 |
Family's Representative Sequence
| Representative Sequence | 3300031995|Ga0307409_100106757|Ga0307409_1001067572 |
| Length | 558 |
| Sequence | MGQLPPLVNRARLDVAEYRVAVSLLSNISAIAGALRTDVDPASSQGNRARALDVSHPRSSAFICDQTSPFPSPRPSRLPVSRLDSPLPRGFDDFVMNGRDITALGYREGPIVGLALKVAKRLKKRMPEDEALKAINAVRLDPQVYVADPVLGELASALIEESVRPFWVERDTPAPYKVWGEGIEKGALDQMHNATRLPVAVSGALMPDAHQGYGLPIGGVLATENAVIPYAVGVDIACRMKLSVFDVPASEMKKLNDALVNALRRETVFGTGAGHKRPLEHEVMECDWGCSPITKHALDKARGQLGTSGSGNHFVEFGVLTLEKPDMGLDAGQYLALLSHSGSRGAGAMVAQHYSKVARSLHPELPPELSYLSWLDLDSEPGQEYWAAMNLMGQYASANHALIHQKVARNIGAKVVAGVENHHNFAWKETHGGKEVIVHRKGATPAGHGVLGVIPGSMASPGFVVRGKGEPVSLDSASHGAGRQMSRTAAREKFRWNHVKPILEAAGVQLLSAGIDEVPGAYKDIHQVMAAQSDLVDVIARFDPKIVRMADAGEKPED |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2524614857 | Deinococcus ficus DSM 19119 | Isolate | Rhizosphere |
| 2 | 2684623219 | Planctomyces sp. SH-PL14 | Isolate | Unclassified |
| 3 | 2738541278 | Niastella sp. CF465 | Isolate | Unclassified |
| 4 | 2739367875 | Deinococcus ficus CC-FR2-10 | Isolate | Unclassified |
| 5 | 2881955468 | Edaphocola flava HME-24 | Isolate | Rhizosphere |
| 6 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 7 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 8 | 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) | Metagenome | Rhizosphere |
| 9 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 10 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 12 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Metagenome | Rhizosphere |
| 14 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 20 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 22 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 23 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 24 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 27 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 28 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 29 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 30 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 31 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 32 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 33 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 35 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 36 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 37 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 49 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 73 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 75 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 76 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 77 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 78 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 79 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 80 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 81 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 82 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 83 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 84 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 85 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 86 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 87 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 88 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 89 | 3300042007 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 | Metagenome | Rhizosphere |
| 90 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 91 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 92 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 93 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 94 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 95 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 96 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 97 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 98 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046463 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300046663 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300046684 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046690 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300047315 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300047322 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 112 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 113 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 114 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049668 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought | Metagenome | Rhizosphere |
| 118 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 119 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 120 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 121 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 123 | 3300053086 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere | Metagenome | Endosphere |
| 124 | 3300053090 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere | Metagenome | Endosphere |
| 125 | 3300053092 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere | Metagenome | Endosphere |
| 126 | 3300053147 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere | Metagenome | Endosphere |
| 127 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 97.04 |
| Metatranscriptomes | 0 |
| Isolates | 2.96 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 5.33 |
| Nodule | 0 |
| Rhizoplane | 1.18 |
| Rhizosphere | 89.94 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 3.55 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25406J46586_10000436 | 3300003203 | Bacteria | 19299 |
| 2 | rootL2_10080161 | 3300003322 | Bacteria | 4899 |
| 3 | Ga0065712_10069448 | 3300005290 | Bacteria | 7278 |
| 4 | Ga0070683_100002648 | 3300005329 | Bacteria | 14311 |
| 5 | Ga0070666_10089269 | 3300005335 | Bacteria | 2115 |
| 6 | Ga0070680_100219228 | 3300005336 | Bacteria | 1606 |
| 7 | Ga0070660_100000295 | 3300005339 | Bacteria | 33225 |
| 8 | Ga0070691_10002461 | 3300005341 | Bacteria | 8222 |
| 9 | Ga0070671_100084741 | 3300005355 | Bacteria | 2650 |
| 10 | Ga0070674_100004666 | 3300005356 | Bacteria | 7831 |
| 11 | Ga0070674_100076871 | 3300005356 | Bacteria | 2375 |
| 12 | Ga0070673_100024113 | 3300005364 | Bacteria | 4455 |
| 13 | Ga0070667_100007417 | 3300005367 | Bacteria | 9110 |
| 14 | Ga0070714_100006615 | 3300005435 | Bacteria | 8966 |
| 15 | Ga0070713_100000594 | 3300005436 | Bacteria | 23010 |
| 16 | Ga0070662_100109048 | 3300005457 | Bacteria | 2106 |
| 17 | Ga0068867_100017922 | 3300005459 | Bacteria | 5031 |
| 18 | Ga0070679_100013726 | 3300005530 | Bacteria | 7760 |
| 19 | Ga0070684_100000133 | 3300005535 | Bacteria | 49355 |
| 20 | Ga0070684_100175478 | 3300005535 | Bacteria | 1948 |
| 21 | Ga0070672_100060739 | 3300005543 | Bacteria | 2977 |
| 22 | Ga0070665_100000427 | 3300005548 | Bacteria | 61536 |
| 23 | Ga0070665_100058510 | 3300005548 | Bacteria | 3864 |
| 24 | Ga0070704_100141056 | 3300005549 | Bacteria | 1882 |
| 25 | Ga0068855_100005644 | 3300005563 | Bacteria | 15274 |
| 26 | Ga0068855_100030610 | 3300005563 | Bacteria | 6435 |
| 27 | Ga0068855_100142866 | 3300005563 | Bacteria | 2727 |
| 28 | Ga0068855_100293526 | 3300005563 | Bacteria | 1802 |
| 29 | Ga0068857_100000089 | 3300005577 | Bacteria | 52738 |
| 30 | Ga0068854_100085596 | 3300005578 | Bacteria | 2335 |
| 31 | Ga0068856_100000188 | 3300005614 | Bacteria | 64727 |
| 32 | Ga0068852_100062744 | 3300005616 | Unclassified | 3233 |
| 33 | Ga0068852_100108817 | 3300005616 | Bacteria | 2516 |
| 34 | Ga0081539_10000012 | 3300005985 | Bacteria | 440369 |
| 35 | Ga0081539_10000523 | 3300005985 | Bacteria | 79800 |
| 36 | Ga0081539_10008228 | 3300005985 | Bacteria | 9168 |
| 37 | Ga0070717_10019944 | 3300006028 | Bacteria | 5265 |
| 38 | Ga0075428_100029445 | 3300006844 | Bacteria | 6075 |
| 39 | Ga0075430_100093147 | 3300006846 | Bacteria | 2519 |
| 40 | Ga0075431_100142856 | 3300006847 | Bacteria | 2467 |
| 41 | Ga0075431_100176746 | 3300006847 | Unclassified | 2192 |
| 42 | Ga0105240_10000888 | 3300009093 | Bacteria | 53670 |
| 43 | Ga0105240_10004520 | 3300009093 | Bacteria | 21135 |
| 44 | Ga0111539_10000057 | 3300009094 | Bacteria | 114860 |
| 45 | Ga0111539_10001711 | 3300009094 | Bacteria | 29199 |
| 46 | Ga0111539_10119209 | 3300009094 | Bacteria | 3093 |
| 47 | Ga0105245_10031708 | 3300009098 | Bacteria | 4679 |
| 48 | Ga0105245_10072912 | 3300009098 | Bacteria | 3121 |
| 49 | Ga0105241_10010215 | 3300009174 | Bacteria | 6896 |
| 50 | Ga0105249_10002034 | 3300009553 | Bacteria | 17542 |
| 51 | Ga0105239_10000343 | 3300010375 | Bacteria | 67956 |
| 52 | Ga0157371_10035316 | 3300013102 | Bacteria | 3582 |
| 53 | Ga0157369_10000715 | 3300013105 | Bacteria | 42688 |
| 54 | Ga0157369_10072518 | 3300013105 | Bacteria | 3696 |
| 55 | Ga0157369_10107033 | 3300013105 | Bacteria | 2975 |
| 56 | Ga0157369_10324832 | 3300013105 | Bacteria | 1599 |
| 57 | Ga0157372_10119607 | 3300013307 | Bacteria | 3024 |
| 58 | Ga0157376_10139327 | 3300014969 | Bacteria | 2174 |
| 59 | Ga0163161_10045224 | 3300017792 | Bacteria | 3174 |
| 60 | Ga0209646_1000367 | 3300025246 | Bacteria | 29985 |
| 61 | Ga0207642_10026115 | 3300025899 | Bacteria | 2373 |
| 62 | Ga0207654_10022799 | 3300025911 | Bacteria | 3345 |
| 63 | Ga0207707_10063128 | 3300025912 | Bacteria | 3224 |
| 64 | Ga0207695_10000066 | 3300025913 | Bacteria | 334103 |
| 65 | Ga0207695_10000584 | 3300025913 | Bacteria | 73948 |
| 66 | Ga0207660_10032560 | 3300025917 | Bacteria | 3599 |
| 67 | Ga0207662_10010807 | 3300025918 | Bacteria | 5045 |
| 68 | Ga0207657_10001629 | 3300025919 | Bacteria | 24192 |
| 69 | Ga0207652_10001579 | 3300025921 | Bacteria | 20044 |
| 70 | Ga0207652_10040843 | 3300025921 | Bacteria | 3941 |
| 71 | Ga0207659_10030250 | 3300025926 | Bacteria | 3698 |
| 72 | Ga0207659_10083842 | 3300025926 | Bacteria | 2364 |
| 73 | Ga0207700_10000598 | 3300025928 | Bacteria | 21075 |
| 74 | Ga0207664_10015500 | 3300025929 | Bacteria | 5535 |
| 75 | Ga0207670_10061395 | 3300025936 | Bacteria | 2565 |
| 76 | Ga0207669_10010282 | 3300025937 | Bacteria | 4500 |
| 77 | Ga0207691_10017693 | 3300025940 | Bacteria | 6757 |
| 78 | Ga0207661_10000075 | 3300025944 | Bacteria | 68028 |
| 79 | Ga0207679_10056854 | 3300025945 | Unclassified | 2891 |
| 80 | Ga0207667_10012154 | 3300025949 | Bacteria | 9943 |
| 81 | Ga0207667_10046366 | 3300025949 | Bacteria | 4602 |
| 82 | Ga0207651_10120711 | 3300025960 | Bacteria | 1987 |
| 83 | Ga0207658_10029198 | 3300025986 | Bacteria | 3892 |
| 84 | Ga0207677_10015946 | 3300026023 | Bacteria | 4436 |
| 85 | Ga0207702_10002788 | 3300026078 | Bacteria | 16380 |
| 86 | Ga0207648_10045094 | 3300026089 | Bacteria | 3868 |
| 87 | Ga0207648_10216640 | 3300026089 | Bacteria | 1701 |
| 88 | Ga0207674_10000028 | 3300026116 | Bacteria | 149277 |
| 89 | Ga0207674_10081096 | 3300026116 | Bacteria | 3246 |
| 90 | Ga0207428_10000996 | 3300027907 | Bacteria | 31420 |
| 91 | Ga0207428_10049338 | 3300027907 | Bacteria | 3373 |
| 92 | Ga0268266_10000568 | 3300028379 | Bacteria | 51078 |
| 93 | Ga0265327_10004568 | 3300031251 | Bacteria | 12192 |
| 94 | Ga0307513_10025829 | 3300031456 | Bacteria | 6791 |
| 95 | Ga0307408_100013955 | 3300031548 | Bacteria | 5336 |
| 96 | Ga0307406_10047172 | 3300031901 | Bacteria | 2714 |
| 97 | Ga0307407_10036311 | 3300031903 | Bacteria | 2715 |
| 98 | Ga0307412_10024006 | 3300031911 | Bacteria | 3760 |
| 99 | Ga0307409_100106757 | 3300031995 | Bacteria | 2338 |
| 100 | Ga0307409_100215775 | 3300031995 | Bacteria | 1728 |
| 101 | Ga0307411_10057139 | 3300032005 | Bacteria | 2576 |
| 102 | Ga0373933_0021288 | 3300035724 | Bacteria | 3682 |
| 103 | Ga0373937_0064645 | 3300036401 | Bacteria | 3366 |
| 104 | Ga0395899_0012562 | 3300037312 | Bacteria | 6491 |
| 105 | Ga0395899_0031695 | 3300037312 | Bacteria | 3972 |
| 106 | Ga0395900_0020320 | 3300037418 | Bacteria | 6778 |
| 107 | Ga0395900_0033985 | 3300037418 | Bacteria | 5248 |
| 108 | Ga0395900_0074586 | 3300037418 | Bacteria | 3487 |
| 109 | Ga0395898_0000028 | 3300037466 | Bacteria | 371232 |
| 110 | Ga0395898_0048107 | 3300037466 | Bacteria | 4183 |
| 111 | Ga0395898_0110240 | 3300037466 | Bacteria | 2638 |
| 112 | Ga0395905_0175688 | 3300037471 | Bacteria | 2011 |
| 113 | Ga0395901_0066307 | 3300038443 | Bacteria | 3760 |
| 114 | Ga0395901_0110816 | 3300038443 | Bacteria | 2882 |
| 115 | Ga0395901_0418060 | 3300038443 | Bacteria | 1375 |
| 116 | Ga0439449_0005479 | 3300042007 | Bacteria | 4862 |
| 117 | Ga0466969_0000398 | 3300044656 | Bacteria | 23847 |
| 118 | Ga0466972_0000047 | 3300044658 | Bacteria | 122901 |
| 119 | Ga0466966_0000047 | 3300044684 | Bacteria | 91962 |
| 120 | Ga0466963_0072834 | 3300044694 | Unclassified | 2315 |
| 121 | Ga0466957_0010907 | 3300044842 | Bacteria | 5226 |
| 122 | Ga0466957_0046911 | 3300044842 | Bacteria | 2624 |
| 123 | Ga0466959_0000035 | 3300045049 | Bacteria | 108669 |
| 124 | Ga0466959_0044714 | 3300045049 | Bacteria | 3262 |
| 125 | Ga0466958_0034624 | 3300045836 | Unclassified | 3014 |
| 126 | Ga0466967_0210086 | 3300045976 | Bacteria | 1846 |
| 127 | Ga0495592_0117568 | 3300046454 | Bacteria | 1874 |
| 128 | Ga0495638_0040636 | 3300046460 | Bacteria | 2947 |
| 129 | Ga0495653_0149156 | 3300046463 | Bacteria | 1636 |
| 130 | Ga0495630_0004200 | 3300046517 | Bacteria | 10084 |
| 131 | Ga0495667_0043393 | 3300046559 | Bacteria | 2980 |
| 132 | Ga0495635_0128431 | 3300046663 | Bacteria | 1728 |
| 133 | Ga0495669_0057046 | 3300046684 | Bacteria | 1761 |
| 134 | Ga0495613_0114925 | 3300046689 | Bacteria | 1937 |
| 135 | Ga0495624_0013234 | 3300046690 | Bacteria | 5624 |
| 136 | Ga0495581_0025679 | 3300047315 | Bacteria | 3416 |
| 137 | Ga0495674_0009329 | 3300047319 | Bacteria | 9329 |
| 138 | Ga0495680_0098504 | 3300047322 | Bacteria | 2182 |
| 139 | Ga0495684_0014440 | 3300047471 | Bacteria | 6077 |
| 140 | Ga0495684_0029852 | 3300047471 | Bacteria | 4185 |
| 141 | Ga0495684_0129926 | 3300047471 | Bacteria | 1893 |
| 142 | Ga0496104_0048343 | 3300048907 | Bacteria | 4011 |
| 143 | Ga0496115_0146272 | 3300048918 | Unclassified | 1950 |
| 144 | Ga0501033_0082171 | 3300049570 | Bacteria | 2363 |
| 145 | Ga0501034_0011632 | 3300049571 | Bacteria | 9111 |
| 146 | Ga0501034_0017603 | 3300049571 | Bacteria | 7327 |
| 147 | Ga0501038_0085570 | 3300049574 | Bacteria | 2651 |
| 148 | Ga0501047_0006670 | 3300049581 | Bacteria | 10849 |
| 149 | Ga0501233_002507 | 3300049668 | Bacteria | 3245 |
| 150 | Ga0501080_0006095 | 3300049742 | Bacteria | 10808 |
| 151 | Ga0501044_0031009 | 3300049823 | Bacteria | 5629 |
| 152 | Ga0501044_0162730 | 3300049823 | Bacteria | 2207 |
| 153 | nmdc:mga0k408_18500_c1 | 3300050493 | Bacteria | 3075 |
| 154 | nmdc:mga0k408_26921_c1 | 3300050493 | Bacteria | 3262 |
| 155 | nmdc:mga0k408_64476_c1 | 3300050493 | Bacteria | 2132 |
| 156 | nmdc:mga09592_141940_c1 | 3300050508 | Bacteria | 2070 |
| 157 | nmdc:mga08y16_1269_c1 | 3300050511 | Bacteria | 25037 |
| 158 | nmdc:mga08y16_162_c1 | 3300050511 | Bacteria | 58005 |
| 159 | Ga0500578_0000060 | 3300053086 | Bacteria | 118274 |
| 160 | Ga0500578_0022911 | 3300053086 | Bacteria | 4011 |
| 161 | Ga0500646_0008018 | 3300053090 | Bacteria | 2700 |
| 162 | Ga0500583_0000003 | 3300053092 | Bacteria | 229587 |
| 163 | Ga0500589_002077 | 3300053147 | Bacteria | 6492 |
| 164 | Ga0500616_0033888 | 3300053153 | Bacteria | 2785 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300031251 | Ga0265327_10004568 | Ga0265327_100045683 | 307 |
| 2 | 3300025918 | Ga0207662_10010807 | Ga0207662_100108075 | 339 |
| 3 | 3300005355 | Ga0070671_100084741 | Ga0070671_1000847411 | 373 |
| 4 | 3300014969 | Ga0157376_10139327 | Ga0157376_101393273 | 375 |
| 5 | 3300038443 | Ga0395901_0418060 | Ga0395901_0418060_27_1337 | 376 |
| 6 | 3300045049 | Ga0466959_0044714 | Ga0466959_0044714_1664_3082 | 377 |
| 7 | 3300005549 | Ga0070704_100141056 | Ga0070704_1001410562 | 379 |
| 8 | iso_pu_bacteria | 2524614857 | 2526063932 | 379 |
| 9 | iso_pu_bacteria | 2739367875 | 2740064156 | 379 |
| 10 | 3300009093 | Ga0105240_10000888 | Ga0105240_1000088839 | 380 |
| 11 | 3300009093 | Ga0105240_10004520 | Ga0105240_1000452011 | 380 |
| 12 | 3300009098 | Ga0105245_10072912 | Ga0105245_100729122 | 380 |
| 13 | 3300025913 | Ga0207695_10000066 | Ga0207695_10000066164 | 380 |
| 14 | 3300025913 | Ga0207695_10000584 | Ga0207695_1000058458 | 380 |
| 15 | 3300037418 | Ga0395900_0020320 | Ga0395900_0020320_4427_5818 | 380 |
| 16 | 3300037466 | Ga0395898_0000028 | Ga0395898_0000028_226227_227618 | 380 |
| 17 | iso_pu_bacteria | 2881955468 | 2881956485 | 380 |
| 18 | 3300005336 | Ga0070680_100219228 | Ga0070680_1002192281 | 383 |
| 19 | 3300049570 | Ga0501033_0082171 | Ga0501033_0082171_234_1673 | 383 |
| 20 | 3300049574 | Ga0501038_0085570 | Ga0501038_0085570_1134_2582 | 383 |
| 21 | 3300049823 | Ga0501044_0162730 | Ga0501044_0162730_100_1539 | 383 |
| 22 | 3300005563 | Ga0068855_100293526 | Ga0068855_1002935262 | 384 |
| 23 | 3300006846 | Ga0075430_100093147 | Ga0075430_1000931472 | 384 |
| 24 | 3300006847 | Ga0075431_100176746 | Ga0075431_1001767462 | 384 |
| 25 | 3300009094 | Ga0111539_10000057 | Ga0111539_1000005736 | 384 |
| 26 | 3300027907 | Ga0207428_10000996 | Ga0207428_1000099613 | 384 |
| 27 | 3300031548 | Ga0307408_100013955 | Ga0307408_1000139554 | 384 |
| 28 | 3300031901 | Ga0307406_10047172 | Ga0307406_100471722 | 384 |
| 29 | 3300031903 | Ga0307407_10036311 | Ga0307407_100363112 | 384 |
| 30 | 3300031911 | Ga0307412_10024006 | Ga0307412_100240063 | 384 |
| 31 | 3300032005 | Ga0307411_10057139 | Ga0307411_100571392 | 384 |
| 32 | 3300050511 | nmdc:mga08y16_162_c1 | nmdc:mga08y16_162_c1_39585_40997 | 384 |
| 33 | iso_pu_bacteria | 2684623219 | 2687238644 | 384 |
| 34 | 3300005290 | Ga0065712_10069448 | Ga0065712_100694486 | 386 |
| 35 | 3300005329 | Ga0070683_100002648 | Ga0070683_10000264812 | 386 |
| 36 | 3300005341 | Ga0070691_10002461 | Ga0070691_100024616 | 386 |
| 37 | 3300005435 | Ga0070714_100006615 | Ga0070714_1000066153 | 386 |
| 38 | 3300005436 | Ga0070713_100000594 | Ga0070713_10000059414 | 386 |
| 39 | 3300005535 | Ga0070684_100000133 | Ga0070684_1000001332 | 386 |
| 40 | 3300005535 | Ga0070684_100175478 | Ga0070684_1001754782 | 386 |
| 41 | 3300005563 | Ga0068855_100030610 | Ga0068855_1000306102 | 386 |
| 42 | 3300005577 | Ga0068857_100000089 | Ga0068857_10000008936 | 386 |
| 43 | 3300005614 | Ga0068856_100000188 | Ga0068856_10000018816 | 386 |
| 44 | 3300013105 | Ga0157369_10000715 | Ga0157369_1000071524 | 386 |
| 45 | 3300025928 | Ga0207700_10000598 | Ga0207700_100005988 | 386 |
| 46 | 3300025929 | Ga0207664_10015500 | Ga0207664_100155003 | 386 |
| 47 | 3300025936 | Ga0207670_10061395 | Ga0207670_100613952 | 386 |
| 48 | 3300025944 | Ga0207661_10000075 | Ga0207661_1000007544 | 386 |
| 49 | 3300025945 | Ga0207679_10056854 | Ga0207679_100568544 | 386 |
| 50 | 3300026078 | Ga0207702_10002788 | Ga0207702_100027887 | 386 |
| 51 | 3300026116 | Ga0207674_10000028 | Ga0207674_1000002873 | 386 |
| 52 | 3300048907 | Ga0496104_0048343 | Ga0496104_0048343_674_2098 | 386 |
| 53 | 3300048918 | Ga0496115_0146272 | Ga0496115_0146272_187_1629 | 386 |
| 54 | 3300049571 | Ga0501034_0011632 | Ga0501034_0011632_4452_5837 | 386 |
| 55 | 3300005335 | Ga0070666_10089269 | Ga0070666_100892692 | 387 |
| 56 | 3300005339 | Ga0070660_100000295 | Ga0070660_1000002959 | 387 |
| 57 | 3300005356 | Ga0070674_100076871 | Ga0070674_1000768712 | 387 |
| 58 | 3300005457 | Ga0070662_100109048 | Ga0070662_1001090482 | 387 |
| 59 | 3300005459 | Ga0068867_100017922 | Ga0068867_1000179226 | 387 |
| 60 | 3300005530 | Ga0070679_100013726 | Ga0070679_1000137266 | 387 |
| 61 | 3300005563 | Ga0068855_100142866 | Ga0068855_1001428662 | 387 |
| 62 | 3300005578 | Ga0068854_100085596 | Ga0068854_1000855964 | 387 |
| 63 | 3300005616 | Ga0068852_100062744 | Ga0068852_1000627442 | 387 |
| 64 | 3300005616 | Ga0068852_100108817 | Ga0068852_1001088171 | 387 |
| 65 | 3300006844 | Ga0075428_100029445 | Ga0075428_1000294452 | 387 |
| 66 | 3300009553 | Ga0105249_10002034 | Ga0105249_100020343 | 387 |
| 67 | 3300013102 | Ga0157371_10035316 | Ga0157371_100353162 | 387 |
| 68 | 3300013105 | Ga0157369_10107033 | Ga0157369_101070333 | 387 |
| 69 | 3300013307 | Ga0157372_10119607 | Ga0157372_101196074 | 387 |
| 70 | 3300017792 | Ga0163161_10045224 | Ga0163161_100452243 | 387 |
| 71 | 3300025912 | Ga0207707_10063128 | Ga0207707_100631284 | 387 |
| 72 | 3300025917 | Ga0207660_10032560 | Ga0207660_100325603 | 387 |
| 73 | 3300025919 | Ga0207657_10001629 | Ga0207657_1000162910 | 387 |
| 74 | 3300025921 | Ga0207652_10001579 | Ga0207652_1000157915 | 387 |
| 75 | 3300025921 | Ga0207652_10040843 | Ga0207652_100408433 | 387 |
| 76 | 3300026023 | Ga0207677_10015946 | Ga0207677_100159462 | 387 |
| 77 | 3300026089 | Ga0207648_10045094 | Ga0207648_100450943 | 387 |
| 78 | 3300026116 | Ga0207674_10081096 | Ga0207674_100810962 | 387 |
| 79 | 3300035724 | Ga0373933_0021288 | Ga0373933_0021288_1641_3032 | 387 |
| 80 | 3300037312 | Ga0395899_0012562 | Ga0395899_0012562_3304_4764 | 387 |
| 81 | 3300037312 | Ga0395899_0031695 | Ga0395899_0031695_1672_3132 | 387 |
| 82 | 3300037418 | Ga0395900_0033985 | Ga0395900_0033985_325_1785 | 387 |
| 83 | 3300037418 | Ga0395900_0074586 | Ga0395900_0074586_453_1913 | 387 |
| 84 | 3300037466 | Ga0395898_0048107 | Ga0395898_0048107_813_2273 | 387 |
| 85 | 3300037466 | Ga0395898_0110240 | Ga0395898_0110240_968_2428 | 387 |
| 86 | 3300037471 | Ga0395905_0175688 | Ga0395905_0175688_369_1829 | 387 |
| 87 | 3300038443 | Ga0395901_0066307 | Ga0395901_0066307_924_2384 | 387 |
| 88 | 3300038443 | Ga0395901_0110816 | Ga0395901_0110816_361_1821 | 387 |
| 89 | 3300047322 | Ga0495680_0098504 | Ga0495680_0098504_635_2026 | 387 |
| 90 | 3300049668 | Ga0501233_002507 | Ga0501233_002507_73_1632 | 387 |
| 91 | 3300049742 | Ga0501080_0006095 | Ga0501080_0006095_4120_5496 | 387 |
| 92 | 3300005356 | Ga0070674_100004666 | Ga0070674_1000046665 | 388 |
| 93 | 3300005364 | Ga0070673_100024113 | Ga0070673_1000241133 | 388 |
| 94 | 3300005367 | Ga0070667_100007417 | Ga0070667_1000074174 | 388 |
| 95 | 3300005543 | Ga0070672_100060739 | Ga0070672_1000607392 | 388 |
| 96 | 3300005548 | Ga0070665_100000427 | Ga0070665_10000042744 | 388 |
| 97 | 3300005548 | Ga0070665_100058510 | Ga0070665_1000585104 | 388 |
| 98 | 3300005985 | Ga0081539_10008228 | Ga0081539_100082285 | 388 |
| 99 | 3300006028 | Ga0070717_10019944 | Ga0070717_100199446 | 388 |
| 100 | 3300006847 | Ga0075431_100142856 | Ga0075431_1001428563 | 388 |
| 101 | 3300009094 | Ga0111539_10119209 | Ga0111539_101192092 | 388 |
| 102 | 3300009098 | Ga0105245_10031708 | Ga0105245_100317083 | 388 |
| 103 | 3300013105 | Ga0157369_10072518 | Ga0157369_100725184 | 388 |
| 104 | 3300013105 | Ga0157369_10324832 | Ga0157369_103248321 | 388 |
| 105 | 3300025926 | Ga0207659_10030250 | Ga0207659_100302502 | 388 |
| 106 | 3300025926 | Ga0207659_10083842 | Ga0207659_100838422 | 388 |
| 107 | 3300025937 | Ga0207669_10010282 | Ga0207669_100102822 | 388 |
| 108 | 3300025940 | Ga0207691_10017693 | Ga0207691_100176934 | 388 |
| 109 | 3300025949 | Ga0207667_10046366 | Ga0207667_100463663 | 388 |
| 110 | 3300025960 | Ga0207651_10120711 | Ga0207651_101207112 | 388 |
| 111 | 3300025986 | Ga0207658_10029198 | Ga0207658_100291982 | 388 |
| 112 | 3300028379 | Ga0268266_10000568 | Ga0268266_1000056818 | 388 |
| 113 | 3300031995 | Ga0307409_100106757 | Ga0307409_1001067572 | 388 |
| 114 | 3300031995 | Ga0307409_100215775 | Ga0307409_1002157752 | 388 |
| 115 | 3300036401 | Ga0373937_0064645 | Ga0373937_0064645_541_1965 | 388 |
| 116 | 3300045976 | Ga0466967_0210086 | Ga0466967_0210086_99_1487 | 388 |
| 117 | 3300046463 | Ga0495653_0149156 | Ga0495653_0149156_28_1446 | 388 |
| 118 | 3300046517 | Ga0495630_0004200 | Ga0495630_0004200_828_2246 | 388 |
| 119 | 3300046559 | Ga0495667_0043393 | Ga0495667_0043393_85_1509 | 388 |
| 120 | 3300046663 | Ga0495635_0128431 | Ga0495635_0128431_185_1603 | 388 |
| 121 | 3300046689 | Ga0495613_0114925 | Ga0495613_0114925_284_1708 | 388 |
| 122 | 3300046690 | Ga0495624_0013234 | Ga0495624_0013234_2189_3607 | 388 |
| 123 | 3300047315 | Ga0495581_0025679 | Ga0495581_0025679_230_1648 | 388 |
| 124 | 3300047319 | Ga0495674_0009329 | Ga0495674_0009329_3042_4460 | 388 |
| 125 | 3300047471 | Ga0495684_0014440 | Ga0495684_0014440_1708_3126 | 388 |
| 126 | 3300047471 | Ga0495684_0029852 | Ga0495684_0029852_1140_2564 | 388 |
| 127 | 3300047471 | Ga0495684_0129926 | Ga0495684_0129926_378_1793 | 388 |
| 128 | 3300049571 | Ga0501034_0017603 | Ga0501034_0017603_3302_4693 | 388 |
| 129 | 3300049823 | Ga0501044_0031009 | Ga0501044_0031009_417_1808 | 388 |
| 130 | 3300050508 | nmdc:mga09592_141940_c1 | nmdc:mga09592_141940_c1_93_1490 | 388 |
| 131 | 3300009094 | Ga0111539_10001711 | Ga0111539_1000171117 | 390 |
| 132 | 3300027907 | Ga0207428_10049338 | Ga0207428_100493383 | 390 |
| 133 | 3300044694 | Ga0466963_0072834 | Ga0466963_0072834_788_2221 | 390 |
| 134 | 3300044842 | Ga0466957_0046911 | Ga0466957_0046911_885_2318 | 390 |
| 135 | 3300045836 | Ga0466958_0034624 | Ga0466958_0034624_494_1927 | 390 |
| 136 | 3300050493 | nmdc:mga0k408_64476_c1 | nmdc:mga0k408_64476_c1_293_1489 | 390 |
| 137 | 3300050511 | nmdc:mga08y16_1269_c1 | nmdc:mga08y16_1269_c1_16783_18201 | 390 |
| 138 | 3300025899 | Ga0207642_10026115 | Ga0207642_100261152 | 391 |
| 139 | 3300026089 | Ga0207648_10216640 | Ga0207648_102166402 | 391 |
| 140 | 3300003322 | rootL2_10080161 | rootL2_100801617 | 392 |
| 141 | 3300005563 | Ga0068855_100005644 | Ga0068855_1000056444 | 392 |
| 142 | 3300005985 | Ga0081539_10000523 | Ga0081539_1000052313 | 392 |
| 143 | 3300009174 | Ga0105241_10010215 | Ga0105241_100102154 | 392 |
| 144 | 3300010375 | Ga0105239_10000343 | Ga0105239_1000034315 | 392 |
| 145 | 3300025246 | Ga0209646_1000367 | Ga0209646_100036724 | 392 |
| 146 | 3300025911 | Ga0207654_10022799 | Ga0207654_100227991 | 392 |
| 147 | 3300025949 | Ga0207667_10012154 | Ga0207667_100121543 | 392 |
| 148 | 3300031456 | Ga0307513_10025829 | Ga0307513_1002582918 | 392 |
| 149 | 3300042007 | Ga0439449_0005479 | Ga0439449_0005479_553_2016 | 392 |
| 150 | 3300044656 | Ga0466969_0000398 | Ga0466969_0000398_15576_17039 | 392 |
| 151 | 3300044658 | Ga0466972_0000047 | Ga0466972_0000047_115160_116623 | 392 |
| 152 | 3300044684 | Ga0466966_0000047 | Ga0466966_0000047_7246_8709 | 392 |
| 153 | 3300044842 | Ga0466957_0010907 | Ga0466957_0010907_1524_2987 | 392 |
| 154 | 3300045049 | Ga0466959_0000035 | Ga0466959_0000035_106850_108313 | 392 |
| 155 | 3300046460 | Ga0495638_0040636 | Ga0495638_0040636_1289_2785 | 392 |
| 156 | 3300049581 | Ga0501047_0006670 | Ga0501047_0006670_1114_2577 | 392 |
| 157 | 3300050493 | nmdc:mga0k408_18500_c1 | nmdc:mga0k408_18500_c1_786_2267 | 392 |
| 158 | 3300050493 | nmdc:mga0k408_26921_c1 | nmdc:mga0k408_26921_c1_798_2261 | 392 |
| 159 | 3300053086 | Ga0500578_0000060 | Ga0500578_0000060_89637_91103 | 392 |
| 160 | 3300053086 | Ga0500578_0022911 | Ga0500578_0022911_1911_3374 | 392 |
| 161 | 3300053090 | Ga0500646_0008018 | Ga0500646_0008018_444_1907 | 392 |
| 162 | 3300053092 | Ga0500583_0000003 | Ga0500583_0000003_121628_123094 | 392 |
| 163 | 3300053147 | Ga0500589_002077 | Ga0500589_002077_2531_3994 | 392 |
| 164 | 3300053153 | Ga0500616_0033888 | Ga0500616_0033888_522_1985 | 392 |
| 165 | iso_pu_bacteria | 2738541278 | 2738725765 | 392 |
| 166 | 3300003203 | JGI25406J46586_10000436 | JGI25406J46586_1000043611 | 393 |
| 167 | 3300005985 | Ga0081539_10000012 | Ga0081539_10000012274 | 393 |
| 168 | 3300046454 | Ga0495592_0117568 | Ga0495592_0117568_423_1835 | 393 |
| 169 | 3300046684 | Ga0495669_0057046 | Ga0495669_0057046_42_1454 | 393 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8dcb-assembly2.cif.gz_B | rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp | 0.8675 | 24 | 385 |
| 7p3b-assembly2.cif.gz_B | human rna ligase rtcb in complex with gmp and co(ii) | 0.8591 | 25 | 385 |
| 7p3b-assembly1.cif.gz_A | human rna ligase rtcb in complex with gmp and co(ii) | 0.8547 | 25 | 385 |
| 4dwr-assembly3.cif.gz_C | rna ligase rtcb/mn2+ complex | 0.8421 | 24 | 387 |
| 8btt-assembly2.cif.gz_B | structure of human rtcb | 0.8235 | 25 | 383 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q99LF4_9_505_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.8823 | 25 | 385 | 3.90.1860.10 |
| af_Q8I5J3_323_568_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.8774 | 178 | 383 | 3.90.1860.10 |
| af_Q4DZR4_37_449_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.8766 | 8 | 382 | 3.90.1860.10 |
| 1uc2A00 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.8668 | 24 | 385 | 3.90.1860.10 |
| af_Q58095_565_968_3.90.1860.10 | Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB | 0.8535 | 76 | 385 | 3.90.1860.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A2V8F5Y5-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9928 | 4 | 291 |
GO:0003909
GO:0005525 GO:0006281 GO:0006396 GO:0030145 GO:0042245 GO:0170057 |
| AF-A0A7C7WGT4-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9883 | 2 | 244 |
GO:0003909
GO:0005525 GO:0006281 GO:0006396 GO:0030145 GO:0042245 GO:0170057 |
| AF-A0A661RYV9-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9766 | 10 | 238 |
GO:0003909
GO:0005525 GO:0006281 GO:0006396 GO:0030145 GO:0042245 GO:0170057 |
| AF-A0A7Z9UA22-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9754 | 1 | 365 |
GO:0003909
GO:0005525 GO:0006281 GO:0006396 GO:0030145 GO:0042245 |
| AF-A0A3D3LBC4-F1-model_v4 | 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) | 0.9751 | 4 | 284 |
GO:0003909
GO:0005525 GO:0006281 GO:0006396 GO:0030145 GO:0042245 GO:0170057 |
Predicted Structure (AlphaFold2)
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