F255142

General Info

Members Datasets Scaffolds Average Seq Length
169 124 338 420

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0000390|Ga0395900_0000390_5661_6983
Length 440
Sequence MWPFSRENRAKTPESSAIALEIDAKSLETRDSIENQNIPVSAENFLAYFGIQSANLPAVTIDSALAVPAVWAAVAFLSRTMAALPLHAYRDTKEGPKQLSGRLESLLHDAPNPEQGSFKFRQWFWQQVFTGGRGLAWIERTPQGVDSLWPMDPTKTTIQRRGGRVFYQFGDPQHPVKEYPAEDVIDVPFMLWHDGLRHYGPITMGSKAIQLALAMNDYGSNFFAGGGVPPLALTGPLPAGKDAMQRAQADIKRSVDAAKNANEAVFPIPPGYELKPVGIDPAKGQMIEARRFQVEEIARIYQLPKVFLQDLIGATFSNTEQQNLMLVQHLVGQWAEAFEDELNLKLFGRNGGGGKYVEHNLDGILRGDFLTRMNGLGQAVQNGLLTPNEGRALDNRPAMANGDKLYIQGATVPLGSNVAKPGTPPTGGANDNKPNEAKAA

Samples

Sample ID Description Type Environment
1 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
4 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
7 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
8 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
9 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
10 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
11 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
12 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
13 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
14 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
15 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
16 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
17 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
18 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
19 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
20 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
21 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
22 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
23 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
25 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
27 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
28 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
29 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
30 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
31 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
32 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
33 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
34 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
35 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
36 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
37 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
38 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
39 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
40 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
41 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
42 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
43 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
44 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
45 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
46 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
47 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
48 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
49 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
50 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
51 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
52 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
53 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
54 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
55 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
56 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
57 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
58 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
59 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
60 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
61 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
62 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
63 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
64 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
65 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
66 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
67 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
68 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
69 3300049516 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_B_5_drought Metagenome Rhizosphere
70 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
78 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
79 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
80 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
81 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
82 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
86 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
87 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
88 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
89 2510065019 Rhizobium leguminosarum bv. trifolii WSM1689 Isolate Nodule
90 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
91 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
92 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
93 2791355267 Rhizobium sp. L18 Isolate Nodule
94 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
95 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
96 2838042994 Rhizobium esperanzae SEMIA 4089 Isolate Nodule
97 2838048938 Rhizobium pisi 27/80 Isolate Nodule
98 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
99 2842363717 Rhizobium leguminosarum SEMIA 4016 Isolate Nodule
100 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
101 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
102 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
103 2888337043 Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 Isolate Nodule
104 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
105 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
106 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
107 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
108 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
109 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
110 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
111 2965062239 Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 Isolate Nodule
112 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
113 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
114 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
115 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
116 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
117 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
118 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
119 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
120 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
121 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
122 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
123 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
124 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 78.11
Metatranscriptomes 0
Isolates 21.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.1
Nodule 24.26
Rhizoplane 1.18
Rhizosphere 59.17
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395900_0000390 3300037418 Bacteria 63448
2 rootL2_10003580 3300003322 Bacteria 61028
3 Ga0055540_1000103 3300003792 Bacteria 94710
4 Ga0058692_1006890 3300003856 Bacteria 3067
5 Ga0070666_10010578 3300005335 Bacteria 5775
6 Ga0079104_1000948 3300006946 Bacteria 22997
7 Ga0099826_10001128 3300006948 Bacteria 15287
8 Ga0123342_1002968 3300009766 Bacteria 27786
9 Ga0157370_10020559 3300013104 Bacteria 6590
10 Ga0214544_1004738 3300021320 Bacteria 27054
11 Ga0214542_1003923 3300021321 Bacteria 29838
12 Ga0214545_1002016 3300021324 Bacteria 38870
13 Ga0214543_1002541 3300021327 Bacteria 35894
14 Ga0228711_1002051 3300022739 Bacteria 30582
15 Ga0228710_1005591 3300022740 Bacteria 19462
16 Ga0209673_1001187 3300025273 Bacteria 28067
17 Ga0209025_1041274 3300025294 Bacteria 1979
18 Ga0209564_1000854 3300025295 Bacteria 40712
19 Ga0209050_1005009 3300025298 Bacteria 8605
20 Ga0209256_1001007 3300025299 Bacteria 33274
21 Ga0209051_1000095 3300025303 Bacteria 167840
22 Ga0209257_1005427 3300025304 Bacteria 8961
23 Ga0207680_10007036 3300025903 Bacteria 5465
24 Ga0209281_1000992 3300027111 Bacteria 22531
25 Ga0209371_1000229 3300027312 Bacteria 71827
26 Ga0209282_1000932 3300027666 Bacteria 15290
27 Ga0307515_10001124 3300028794 Bacteria 61171
28 Ga0268256_1000373 3300030500 Bacteria 42542
29 Ga0315914_1002655 3300031967 Bacteria 27372
30 Ga0315913_1001673 3300033430 Bacteria 24891
31 Ga0395899_0000291 3300037312 Bacteria 64683
32 Ga0395899_0000518 3300037312 Bacteria 42666
33 Ga0395899_0020555 3300037312 Bacteria 5004
34 Ga0395899_0045388 3300037312 Bacteria 3274
35 Ga0395900_0000737 3300037418 Bacteria 43461
36 Ga0395900_0000751 3300037418 Bacteria 43126
37 Ga0395900_0001015 3300037418 Bacteria 36194
38 Ga0395900_0001344 3300037418 Bacteria 29723
39 Ga0395900_0004831 3300037418 Bacteria 14193
40 Ga0395900_0007831 3300037418 Bacteria 11011
41 Ga0395900_0095874 3300037418 Bacteria 3048
42 Ga0395900_0096379 3300037418 Viruses 3039
43 Ga0395900_0122753 3300037418 Viruses 2664
44 Ga0395900_0134397 3300037418 Bacteria 2534
45 Ga0395900_0225654 3300037418 Bacteria 1886
46 Ga0395898_0001032 3300037466 Bacteria 43441
47 Ga0395898_0001661 3300037466 Bacteria 29839
48 Ga0395898_0001763 3300037466 Bacteria 28342
49 Ga0395898_0002045 3300037466 Bacteria 25214
50 Ga0395898_0002797 3300037466 Bacteria 20004
51 Ga0395898_0002897 3300037466 Bacteria 19523
52 Ga0395898_0006149 3300037466 Bacteria 12860
53 Ga0395898_0006772 3300037466 Bacteria 12202
54 Ga0395898_0024869 3300037466 Bacteria 6037
55 Ga0395898_0090378 3300037466 Bacteria 2946
56 Ga0395905_0000692 3300037471 Bacteria 44697
57 Ga0395905_0000758 3300037471 Viruses 42564
58 Ga0395905_0001036 3300037471 Bacteria 35268
59 Ga0395905_0002100 3300037471 Bacteria 22656
60 Ga0395905_0033800 3300037471 Bacteria 4803
61 Ga0395905_0095867 3300037471 Bacteria 2785
62 Ga0395901_0000541 3300038443 Bacteria 43481
63 Ga0395901_0000573 3300038443 Bacteria 42822
64 Ga0395901_0001321 3300038443 Bacteria 26109
65 Ga0395901_0016223 3300038443 Bacteria 7588
66 Ga0395901_0083444 3300038443 Viruses 3340
67 Ga0451849_0856144 3300041505 Bacteria 3512
68 Ga0495590_0000082 3300046457 Bacteria 62692
69 Ga0495605_0008533 3300046474 Bacteria 5789
70 Ga0495584_0002837 3300046491 Bacteria 9674
71 Ga0495607_0009477 3300046501 Bacteria 6586
72 Ga0495606_0000602 3300046507 Bacteria 56964
73 Ga0495606_0001724 3300046507 Bacteria 28102
74 Ga0495606_0002043 3300046507 Bacteria 24723
75 Ga0495610_0003493 3300046512 Bacteria 12222
76 Ga0495610_0022691 3300046512 Bacteria 3428
77 Ga0495616_0000239 3300046513 Bacteria 44698
78 Ga0495620_0000251 3300046515 Bacteria 39787
79 Ga0495632_0000429 3300046519 Bacteria 39989
80 Ga0495637_0002299 3300046520 Bacteria 10594
81 Ga0495637_0006643 3300046520 Bacteria 5789
82 Ga0495643_0000337 3300046522 Bacteria 63856
83 Ga0495643_0001058 3300046522 Bacteria 27626
84 Ga0495643_0003079 3300046522 Bacteria 12520
85 Ga0495648_0000250 3300046524 Bacteria 60781
86 Ga0495654_0000219 3300046530 Bacteria 53727
87 Ga0495609_0000953 3300046538 Bacteria 20925
88 Ga0495597_0006630 3300046542 Bacteria 5967
89 Ga0495625_0000659 3300046660 Bacteria 49323
90 Ga0495588_0000470 3300046674 Bacteria 20171
91 Ga0495671_0026784 3300046692 Bacteria 2984
92 Ga0495649_0000142 3300046694 Bacteria 62545
93 Ga0495660_0000198 3300046810 Bacteria 62786
94 Ga0495683_0000361 3300047323 Bacteria 37520
95 Ga0495677_0004204 3300047445 Bacteria 5552
96 Ga0495673_0023310 3300047469 Bacteria 3014
97 Ga0495686_0001384 3300047472 Bacteria 26917
98 Ga0495626_0000586 3300048091 Bacteria 36070
99 Ga0496108_0000311 3300048911 Bacteria 41465
100 Ga0496109_0001123 3300048912 Bacteria 22258
101 Ga0496117_0001126 3300048920 Bacteria 40294
102 Ga0496118_0001183 3300048921 Bacteria 40294
103 Ga0496124_0045782 3300048927 Bacteria 3750
104 Ga0496124_0184261 3300048927 Bacteria 1603
105 Ga0496125_0012529 3300048928 Bacteria 8411
106 Ga0495678_000357 3300049459 Bacteria 46974
107 Ga0495682_0000374 3300049460 Bacteria 32424
108 Ga0501293_000001 3300049516 Bacteria 42123
109 Ga0501031_0070350 3300049568 Viruses 2279
110 Ga0501032_0022266 3300049569 Bacteria 4394
111 Ga0501033_0000904 3300049570 Bacteria 27078
112 Ga0501033_0025217 3300049570 Bacteria 4480
113 Ga0501034_0149884 3300049571 Bacteria 2309
114 Ga0501037_0000171 3300049573 Bacteria 61350
115 Ga0501038_0026317 3300049574 Bacteria 5182
116 Ga0501043_0000066 3300049579 Bacteria 93258
117 Ga0501069_0000002 3300049585 Bacteria 269636
118 Ga0501070_0000281 3300049586 Bacteria 47619
119 Ga0501071_0053505 3300049587 Bacteria 2912
120 Ga0501074_0000009 3300049590 Bacteria 100578
121 Ga0501080_0003340 3300049742 Bacteria 14170
122 Ga0501280_000066 3300049776 Bacteria 30294
123 Ga0501035_0000170 3300049822 Bacteria 79614
124 Ga0501035_0012369 3300049822 Bacteria 7890
125 Ga0501035_0206385 3300049822 Bacteria 1683
126 Ga0501044_0000087 3300049823 Bacteria 112979
127 Ga0501044_0000991 3300049823 Bacteria 34129
128 Ga0501044_0193465 3300049823 Bacteria 1995
129 Ga0500610_0039304 3300053079 Bacteria 2441
130 Ga0500608_015135 3300053122 Viruses 3459
131 Ga0500561_0000025 3300053137 Bacteria 32346
132 Ga0500616_0000519 3300053153 Bacteria 48825
133 2510132704 2510065019 Bacteria 6903379
134 2513882083 2513237140 Bacteria 7076289
135 2535516218 2534681796 Bacteria 7146037
136 2585272846 2582581307 Bacteria 6597605
137 2793367021 2791355267 Bacteria 7222458
138 2830076508 2830075706 Bacteria 3855215
139 2837653220 2837651117 Bacteria 3772164
140 2838044617 2838042994 Bacteria 6046894
141 2838051716 2838048938 Bacteria 6044578
142 2838661714 2838661181 Bacteria 7385261
143 2842366683 2842363717 Bacteria 6844742
144 2848993745 2848992105 Bacteria 6810864
145 2869281107 2869278585 Bacteria 7077053
146 2882635562 2882632389 Bacteria 8154593
147 2888340517 2888337043 Bacteria 6629336
148 2915653724 2915650412 Bacteria 4288180
149 2916024551 2916021584 Bacteria 6854472
150 2937115751 2937113482 Bacteria 6505872
151 2957511385 2957505466 Bacteria 7253085
152 2958037070 2958034702 Bacteria 6989922
153 2958050693 2958041894 Bacteria 13082850
154 2960690808 2960687367 Bacteria 6535474
155 2965063691 2965062239 Bacteria 7412989
156 2967765135 2967762386 Bacteria 6923502
157 2970048781 2970047711 Bacteria 7088379
158 2970101759 2970095765 Bacteria 6936963
159 2970112341 2970109326 Bacteria 6863976
160 2970595711 2970593180 Bacteria 7073582
161 2977570500 2977565890 Bacteria 6901543
162 2989353056 2989349275 Bacteria 6349068
163 2996313749 2996310559 Bacteria 6357320
164 8005285601 8005282627 Bacteria 6675747
165 8005288470 8005282627 Bacteria 6675747
166 8005631217 8005626139 Bacteria 6534237
167 8018128284 8018127388 Bacteria 7351159
168 8018164511 8018163183 Bacteria 7277977
169 8055434449 8055431914 Bacteria 4551896
170 Ga0395900_0000390
171 rootL2_10003580
172 Ga0055540_1000103
173 Ga0058692_1006890
174 Ga0070666_10010578
175 Ga0079104_1000948
176 Ga0099826_10001128
177 Ga0123342_1002968
178 Ga0157370_10020559
179 Ga0214544_1004738
180 Ga0214542_1003923
181 Ga0214545_1002016
182 Ga0214543_1002541
183 Ga0228711_1002051
184 Ga0228710_1005591
185 Ga0209673_1001187
186 Ga0209025_1041274
187 Ga0209564_1000854
188 Ga0209050_1005009
189 Ga0209256_1001007
190 Ga0209051_1000095
191 Ga0209257_1005427
192 Ga0207680_10007036
193 Ga0209281_1000992
194 Ga0209371_1000229
195 Ga0209282_1000932
196 Ga0307515_10001124
197 Ga0268256_1000373
198 Ga0315914_1002655
199 Ga0315913_1001673
200 Ga0395899_0000291
201 Ga0395899_0000518
202 Ga0395899_0020555
203 Ga0395899_0045388
204 Ga0395900_0000737
205 Ga0395900_0000751
206 Ga0395900_0001015
207 Ga0395900_0001344
208 Ga0395900_0004831
209 Ga0395900_0007831
210 Ga0395900_0095874
211 Ga0395900_0096379
212 Ga0395900_0122753
213 Ga0395900_0134397
214 Ga0395900_0225654
215 Ga0395898_0001032
216 Ga0395898_0001661
217 Ga0395898_0001763
218 Ga0395898_0002045
219 Ga0395898_0002797
220 Ga0395898_0002897
221 Ga0395898_0006149
222 Ga0395898_0006772
223 Ga0395898_0024869
224 Ga0395898_0090378
225 Ga0395905_0000692
226 Ga0395905_0000758
227 Ga0395905_0001036
228 Ga0395905_0002100
229 Ga0395905_0033800
230 Ga0395905_0095867
231 Ga0395901_0000541
232 Ga0395901_0000573
233 Ga0395901_0001321
234 Ga0395901_0016223
235 Ga0395901_0083444
236 Ga0451849_0856144
237 Ga0495590_0000082
238 Ga0495605_0008533
239 Ga0495584_0002837
240 Ga0495607_0009477
241 Ga0495606_0000602
242 Ga0495606_0001724
243 Ga0495606_0002043
244 Ga0495610_0003493
245 Ga0495610_0022691
246 Ga0495616_0000239
247 Ga0495620_0000251
248 Ga0495632_0000429
249 Ga0495637_0002299
250 Ga0495637_0006643
251 Ga0495643_0000337
252 Ga0495643_0001058
253 Ga0495643_0003079
254 Ga0495648_0000250
255 Ga0495654_0000219
256 Ga0495609_0000953
257 Ga0495597_0006630
258 Ga0495625_0000659
259 Ga0495588_0000470
260 Ga0495671_0026784
261 Ga0495649_0000142
262 Ga0495660_0000198
263 Ga0495683_0000361
264 Ga0495677_0004204
265 Ga0495673_0023310
266 Ga0495686_0001384
267 Ga0495626_0000586
268 Ga0496108_0000311
269 Ga0496109_0001123
270 Ga0496117_0001126
271 Ga0496118_0001183
272 Ga0496124_0045782
273 Ga0496124_0184261
274 Ga0496125_0012529
275 Ga0495678_000357
276 Ga0495682_0000374
277 Ga0501293_000001
278 Ga0501031_0070350
279 Ga0501032_0022266
280 Ga0501033_0000904
281 Ga0501033_0025217
282 Ga0501034_0149884
283 Ga0501037_0000171
284 Ga0501038_0026317
285 Ga0501043_0000066
286 Ga0501069_0000002
287 Ga0501070_0000281
288 Ga0501071_0053505
289 Ga0501074_0000009
290 Ga0501080_0003340
291 Ga0501280_000066
292 Ga0501035_0000170
293 Ga0501035_0012369
294 Ga0501035_0206385
295 Ga0501044_0000087
296 Ga0501044_0000991
297 Ga0501044_0193465
298 Ga0500610_0039304
299 Ga0500608_015135
300 Ga0500561_0000025
301 Ga0500616_0000519
302 2510132704
303 2513882083
304 2535516218
305 2585272846
306 2793367021
307 2830076508
308 2837653220
309 2838044617
310 2838051716
311 2838661714
312 2842366683
313 2848993745
314 2869281107
315 2882635562
316 2888340517
317 2915653724
318 2916024551
319 2937115751
320 2957511385
321 2958037070
322 2958050693
323 2960690808
324 2965063691
325 2967765135
326 2970048781
327 2970101759
328 2970112341
329 2970595711
330 2977570500
331 2989353056
332 2996313749
333 8005285601
334 8005288470
335 8005631217
336 8018128284
337 8018164511
338 8055434449

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04860

Phage_portal

Phage portal protein

68

395

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
8cez-assembly1.cif.gz_B hk97 portal protein in situ (prohead ii) 0.7087 42 383
3kdr-assembly1.cif.gz_B the crystal structure of a hk97 family phage portal protein from corynebacterium diphtheriae to 2.9a 0.6901 53 349
8fql-assembly1.cif.gz_A portal vertex of hk97 phage 0.6874 48 383
3kdr-assembly1.cif.gz_A the crystal structure of a hk97 family phage portal protein from corynebacterium diphtheriae to 2.9a 0.6825 46 350
3kdr-assembly1.cif.gz_C the crystal structure of a hk97 family phage portal protein from corynebacterium diphtheriae to 2.9a 0.6792 53 350
ID Description Score Start End Superfamily
af_Q8LL17_40_198_2.120.10.80 Mainly Beta;6 Propeller;Neuraminidase;Kelch-type beta propeller 0.6949 138 159 2.120.10.80
af_O53518_307_373_2.60.40.790 Mainly Beta;Sandwich;Immunoglobulin-like; 0.6168 122 165 2.60.40.790
3kdrB02 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2; 0.6156 95 208 3.40.140.120
3d6wB01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.5596 125 164 2.40.50.40
3igfB02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.5549 122 177 2.60.40.790
ID Description Score Start End GO Terms
AF-A0A3D4LYZ1-F1-model_v4 deleted 0.8091 45 407
AF-A0A833CK87-F1-model_v4 Phage portal protein 0.8013 37 413
AF-A0A0J5IKG6-F1-model_v4 Portal protein 0.7942 19 204
AF-A0A7I0RE32-F1-model_v4 deleted 0.7931 17 415
AF-A0A7W6P074-F1-model_v4 HK97 family phage portal protein 0.7929 88 401

Map