F255692

General Info

Members Datasets Scaffolds Average Seq Length
169 131 339 553

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2526164512|2526211911
Length 628
Sequence THAPHQGKSLLLSGLLLALLLSGCSPMLPREGTYDSIQSSLQQPKPNPPAERAAIDAALLPPIQLPAAVAPQPLEPRFDLAVAEAPAAQVFLALVDGTRYSMLLPPDVSGSITLNLKNVTVREALEVIRDLYGYDFRIQGNRIAVQPNTPQTRIFQVSYLASKRGGTSATRVVSSNASNNGSGNGTSGSSSSATRNNVAAETTNVFTGQVSDFWLELGVGIATALDCKYEVTSDTGAGANSGLMGQMLGLRLSKLECPEGRRFLMNQQSGTVMVRALPAELREVNELLKAMQAGVERQVMLEAKLIEVELNDGFQSGVNWTAFDKFGRQRWGMNANNNQWPVQSQDGQLRRLTSETYSSTEGTTRNWESVALSGASGLLNSFPVAGALGLSFQTSDFASIIQFLETQGTVYVMSNPRIATLNNQKAVLKVGSDDYYVTGVEPGTTTVGSGNNNTFNPPTITAQPFFSGIALDVTPQIDDAGMITLHIRPAVTEVTTKELVVNLGSQAGTYTLPFASSRVKETDSIVRVKDGMIVAIGGMMSQEQAADESKVPGAGDIPFFGHFFKQTNRATRKREMVVLIKPTVIRGEGDWQQDMDALNQRLKDYDPRKYPALADPVTAGRGQDHGRQ

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
30 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
43 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
44 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
45 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
67 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
68 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
69 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
70 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
71 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
72 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
73 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
76 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
77 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
78 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
79 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
80 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
81 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
82 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
83 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
89 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
90 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
91 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
92 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
93 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
97 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
98 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
99 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
100 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
101 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
102 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
103 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
104 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
107 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
108 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
109 3300049129 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
111 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
114 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
115 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
116 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
117 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
118 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
119 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
120 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
121 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
122 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
123 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
126 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
127 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
128 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
129 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
130 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
131 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.67
Metatranscriptomes 1.18
Isolates 4.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.14
Nodule 0
Rhizoplane 0.59
Rhizosphere 86.98
Stem 0
Stem Tuber 0
Unclassified 3.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10003290 3300003316 Bacteria 20300
2 rootH1_10003290 3300003323 Bacteria 63047
3 rootH1_10113263 3300003323 Bacteria 18811
4 Ga0055531_10000107 3300003794 Bacteria 91062
5 Ga0065707_10083622 3300005295 Bacteria 8618
6 Ga0068869_100000890 3300005334 Bacteria 17242
7 Ga0068869_100009186 3300005334 Bacteria 6406
8 Ga0070689_100013874 3300005340 Bacteria 5840
9 Ga0070674_100023753 3300005356 Bacteria 3973
10 Ga0070673_100006925 3300005364 Bacteria 7416
11 Ga0070701_10000257 3300005438 Bacteria 17170
12 Ga0070700_100000418 3300005441 Bacteria 21723
13 Ga0070700_100008750 3300005441 Bacteria 5525
14 Ga0070663_100000193 3300005455 Bacteria 30722
15 Ga0070678_100049686 3300005456 Bacteria 3028
16 Ga0070681_10163711 3300005458 Unclassified 2147
17 Ga0070706_100003362 3300005467 Bacteria 15786
18 Ga0070706_100016870 3300005467 Bacteria 6745
19 Ga0070686_100001091 3300005544 Bacteria 15634
20 Ga0070696_100003148 3300005546 Bacteria 10983
21 Ga0070693_100016890 3300005547 Bacteria 3784
22 Ga0070664_100017845 3300005564 Bacteria 5828
23 Ga0068857_100009243 3300005577 Bacteria 8550
24 Ga0068857_100105936 3300005577 Bacteria 2525
25 Ga0070702_100000668 3300005615 Bacteria 12820
26 Ga0068852_100001580 3300005616 Bacteria 15476
27 Ga0068852_100033996 3300005616 Bacteria 4240
28 Ga0068864_100040246 3300005618 Bacteria 3999
29 Ga0068866_10000555 3300005718 Bacteria 17040
30 Ga0068861_100001457 3300005719 Bacteria 14973
31 Ga0068861_100002573 3300005719 Bacteria 11865
32 Ga0068870_10015746 3300005840 Bacteria 3596
33 Ga0068858_100003540 3300005842 Bacteria 15460
34 Ga0068860_100023701 3300005843 Bacteria 5933
35 Ga0068862_100025514 3300005844 Bacteria 4962
36 Ga0075366_10006492 3300006195 Bacteria 6412
37 Ga0097621_100020601 3300006237 Bacteria 5082
38 Ga0068871_100000681 3300006358 Bacteria 23153
39 Ga0068871_100009041 3300006358 Bacteria 7196
40 Ga0068865_100000533 3300006881 Bacteria 21252
41 Ga0068865_100088056 3300006881 Bacteria 2246
42 Ga0105245_10002383 3300009098 Bacteria 17003
43 Ga0105243_10002938 3300009148 Bacteria 14100
44 Ga0105243_10035403 3300009148 Bacteria 3870
45 Ga0105242_10010819 3300009176 Bacteria 7005
46 Ga0105248_10019399 3300009177 Bacteria 7523
47 Ga0105239_10001595 3300010375 Bacteria 29974
48 Ga0105239_10026814 3300010375 Bacteria 6342
49 Ga0105239_10183810 3300010375 Bacteria 2339
50 Ga0157378_10011026 3300013297 Bacteria 7910
51 Ga0157378_10078606 3300013297 Bacteria 2976
52 Ga0163162_10057938 3300013306 Bacteria 3902
53 Ga0157375_10023442 3300013308 Bacteria 5695
54 Ga0157380_10020004 3300014326 Bacteria 4997
55 Ga0157377_10053089 3300014745 Bacteria 2290
56 Ga0157379_10132568 3300014968 Bacteria 2243
57 Ga0157376_10074993 3300014969 Bacteria 2885
58 Ga0213872_10000127 3300021361 Bacteria 69204
59 Ga0213872_10000134 3300021361 Bacteria 67449
60 Ga0209050_1014455 3300025298 Bacteria 3396
61 Ga0209257_1000032 3300025304 Bacteria 680354
62 Ga0207642_10000182 3300025899 Bacteria 18128
63 Ga0207684_10020136 3300025910 Bacteria 5699
64 Ga0207671_10005933 3300025914 Bacteria 11076
65 Ga0207687_10015491 3300025927 Bacteria 5001
66 Ga0207670_10006746 3300025936 Bacteria 6381
67 Ga0207689_10002571 3300025942 Bacteria 16810
68 Ga0207689_10025325 3300025942 Bacteria 4971
69 Ga0207651_10001666 3300025960 Bacteria 10206
70 Ga0207640_10062623 3300025981 Bacteria 2469
71 Ga0207677_10027556 3300026023 Bacteria 3581
72 Ga0207703_10030162 3300026035 Bacteria 4284
73 Ga0207678_10000651 3300026067 Bacteria 31871
74 Ga0207708_10000281 3300026075 Bacteria 39935
75 Ga0207708_10037497 3300026075 Bacteria 3693
76 Ga0207648_10000121 3300026089 Bacteria 76270
77 Ga0207648_10035789 3300026089 Bacteria 4374
78 Ga0207648_10056441 3300026089 Bacteria 3427
79 Ga0207648_10123957 3300026089 Bacteria 2272
80 Ga0207674_10010197 3300026116 Bacteria 10671
81 Ga0207674_10175853 3300026116 Bacteria 2093
82 Ga0207675_100001258 3300026118 Bacteria 25279
83 Ga0207675_100004623 3300026118 Bacteria 13267
84 Ga0207683_10043542 3300026121 Bacteria 3923
85 Ga0207698_10003426 3300026142 Bacteria 9544
86 Ga0207698_10027386 3300026142 Bacteria 4045
87 Ga0268264_10017304 3300028381 Bacteria 5907
88 Ga0265334_10000863 3300028573 Bacteria 15178
89 Ga0307515_10031360 3300028794 Bacteria 8868
90 Ga0307515_10055316 3300028794 Bacteria 5802
91 Ga0265324_10000001 3300029957 Bacteria 562975
92 Ga0265332_10000039 3300031238 Bacteria 128373
93 Ga0265332_10001810 3300031238 Bacteria 11496
94 Ga0265320_10012000 3300031240 Bacteria 5068
95 Ga0265325_10000046 3300031241 Bacteria 83850
96 Ga0265331_10011755 3300031250 Bacteria 4781
97 Ga0307509_10006822 3300031507 Bacteria 15198
98 Ga0307408_100000026 3300031548 Bacteria 261688
99 Ga0316579_10009518 3300031691 Unclassified 4088
100 Ga0265314_10001961 3300031711 Bacteria 21892
101 Ga0265314_10017685 3300031711 Bacteria 5587
102 Ga0265314_10051197 3300031711 Bacteria 2877
103 Ga0265342_10008998 3300031712 Bacteria 7092
104 Ga0307411_10009904 3300032005 Bacteria 5045
105 Ga0316583_10000695 3300032133 Bacteria 10369
106 Ga0307507_10065074 3300033179 Bacteria 3357
107 Ga0316574_0035605 3300035398 Unclassified 3044
108 Ga0316574_0120841 3300035398 Bacteria 1682
109 Ga0316582_0013704 3300036647 Bacteria 4572
110 Ga0316582_0029628 3300036647 Unclassified 3327
111 Ga0316584_0135302 3300036712 Bacteria 1840
112 Ga0316584_0150584 3300036712 Bacteria 1732
113 Ga0395900_0002425 3300037418 Bacteria 20543
114 Ga0395898_0002961 3300037466 Bacteria 19303
115 Ga0395905_0000345 3300037471 Bacteria 65974
116 Ga0395905_0029309 3300037471 Bacteria 5186
117 Ga0395905_0062726 3300037471 Bacteria 3476
118 Ga0395905_0114810 3300037471 Bacteria 2530
119 Ga0395901_0272406 3300038443 Bacteria 1760
120 Ga0400483_172408 3300039062 Bacteria 3175
121 Ga0436361_0146317 3300039447 Bacteria 92155
122 Ga0436361_0455065 3300039447 Bacteria 73475
123 Ga0450917_000560 3300042120 Bacteria 2770
124 Ga0450892_000438 3300042130 Bacteria 4847
125 Ga0450889_000597 3300042144 Bacteria 4012
126 Ga0451577_0001377 3300042876 Bacteria 32574
127 Ga0451577_0004781 3300042876 Bacteria 14158
128 Ga0451577_0023333 3300042876 Bacteria 5643
129 Ga0453684_0016140 3300044712 Bacteria 11713
130 Ga0453684_0173376 3300044712 Bacteria 2539
131 Ga0451576_0004228 3300045051 Bacteria 18849
132 Ga0451576_0005891 3300045051 Bacteria 15210
133 Ga0495638_0000858 3300046460 Bacteria 31670
134 Ga0495650_0031480 3300046471 Bacteria 2387
135 Ga0495632_0007288 3300046519 Bacteria 6972
136 Ga0495625_0001336 3300046660 Bacteria 30611
137 Ga0495661_0002167 3300046665 Archaea 15349
138 Ga0495649_0003230 3300046694 Bacteria 11125
139 Ga0495680_0045252 3300047322 Bacteria 3476
140 Ga0495683_0000001 3300047323 Unclassified 2230803
141 Ga0495687_002192 3300047443 Bacteria 16249
142 Ga0496110_0007302 3300048913 Bacteria 8815
143 Ga0496121_0012491 3300048924 Bacteria 9250
144 Ga0496121_0016762 3300048924 Bacteria 7538
145 Ga0496124_0000138 3300048927 Bacteria 150311
146 Ga0496125_0030678 3300048928 Bacteria 4805
147 Ga0501309_000954 3300049129 Bacteria 2625
148 Ga0501310_000726 3300049130 Bacteria 2915
149 Ga0501068_0001081 3300049584 Bacteria 14428
150 Ga0501070_0014775 3300049586 Bacteria 6569
151 Ga0501073_0000411 3300049589 Bacteria 29291
152 Ga0501074_0009046 3300049590 Bacteria 7233
153 Ga0501222_002137 3300049662 Bacteria 2741
154 Ga0501253_001779 3300049683 Bacteria 2285
155 Ga0501221_001931 3300049704 Bacteria 3458
156 Ga0501229_000931 3300049706 Bacteria 3305
157 Ga0501080_0000397 3300049742 Bacteria 33565
158 Ga0501083_0022388 3300049744 Bacteria 4386
159 Ga0501241_005221 3300049758 Unclassified 2423
160 nmdc:mga07m45_5518_c1 3300050496 Bacteria 6304
161 nmdc:mga07m45_561_c1 3300050496 Bacteria 15791
162 Ga0500658_0000970 3300053134 Bacteria 11697
163 Ga0501084_0075902 3300054114 Bacteria 2816
164 2526211911 2526164512 Bacteria 4025691
165 2649122101 2648501241 Bacteria 5312320
166 2652973553 2651869818 Bacteria 5864031
167 2881715820 2881714928 Bacteria 2469486
168 2919495273 2919493220 Bacteria 4598500
169 2919545540 2919543075 Bacteria 4728703
170 2923526721 2923525760 Bacteria 4472324
171 rootH1_10003290
172 rootH1_10113263
173 Ga0055531_10000107
174 Ga0065707_10083622
175 Ga0068869_100000890
176 Ga0068869_100009186
177 Ga0070689_100013874
178 Ga0070674_100023753
179 Ga0070673_100006925
180 Ga0070701_10000257
181 Ga0070700_100000418
182 Ga0070700_100008750
183 Ga0070663_100000193
184 Ga0070678_100049686
185 Ga0070681_10163711
186 Ga0070706_100003362
187 Ga0070706_100016870
188 Ga0070686_100001091
189 Ga0070696_100003148
190 Ga0070693_100016890
191 Ga0070664_100017845
192 Ga0068857_100009243
193 Ga0068857_100105936
194 Ga0070702_100000668
195 Ga0068852_100001580
196 Ga0068852_100033996
197 Ga0068864_100040246
198 Ga0068866_10000555
199 Ga0068861_100001457
200 Ga0068861_100002573
201 Ga0068870_10015746
202 Ga0068858_100003540
203 Ga0068860_100023701
204 Ga0068862_100025514
205 Ga0075366_10006492
206 Ga0097621_100020601
207 Ga0068871_100000681
208 Ga0068871_100009041
209 Ga0068865_100000533
210 Ga0068865_100088056
211 Ga0105245_10002383
212 Ga0105243_10002938
213 Ga0105243_10035403
214 Ga0105242_10010819
215 Ga0105248_10019399
216 Ga0105239_10001595
217 Ga0105239_10026814
218 Ga0105239_10183810
219 Ga0157378_10011026
220 Ga0157378_10078606
221 Ga0163162_10057938
222 Ga0157375_10023442
223 Ga0157380_10020004
224 Ga0157377_10053089
225 Ga0157379_10132568
226 Ga0157376_10074993
227 Ga0213872_10000127
228 Ga0213872_10000134
229 Ga0209050_1014455
230 Ga0209257_1000032
231 Ga0207642_10000182
232 Ga0207684_10020136
233 Ga0207671_10005933
234 Ga0207687_10015491
235 Ga0207670_10006746
236 Ga0207689_10002571
237 Ga0207689_10025325
238 Ga0207651_10001666
239 Ga0207640_10062623
240 Ga0207677_10027556
241 Ga0207703_10030162
242 Ga0207678_10000651
243 Ga0207708_10000281
244 Ga0207708_10037497
245 Ga0207648_10000121
246 Ga0207648_10035789
247 Ga0207648_10056441
248 Ga0207648_10123957
249 Ga0207674_10010197
250 Ga0207674_10175853
251 Ga0207675_100001258
252 Ga0207675_100004623
253 Ga0207683_10043542
254 Ga0207698_10003426
255 Ga0207698_10027386
256 Ga0268264_10017304
257 Ga0265334_10000863
258 Ga0307515_10031360
259 Ga0307515_10055316
260 Ga0265324_10000001
261 Ga0265332_10000039
262 Ga0265332_10001810
263 Ga0265320_10012000
264 Ga0265325_10000046
265 Ga0265331_10011755
266 Ga0307509_10006822
267 Ga0307408_100000026
268 Ga0316579_10009518
269 Ga0265314_10001961
270 Ga0265314_10017685
271 Ga0265314_10051197
272 Ga0265342_10008998
273 Ga0307411_10009904
274 Ga0316583_10000695
275 Ga0307507_10065074
276 Ga0316574_0035605
277 Ga0316574_0120841
278 Ga0316582_0013704
279 Ga0316582_0029628
280 Ga0316584_0135302
281 Ga0316584_0150584
282 Ga0395900_0002425
283 Ga0395898_0002961
284 Ga0395905_0000345
285 Ga0395905_0029309
286 Ga0395905_0062726
287 Ga0395905_0114810
288 Ga0395901_0272406
289 Ga0400483_172408
290 Ga0436361_0146317
291 Ga0436361_0455065
292 Ga0450917_000560
293 Ga0450892_000438
294 Ga0450889_000597
295 Ga0451577_0001377
296 Ga0451577_0004781
297 Ga0451577_0023333
298 Ga0453684_0016140
299 Ga0453684_0173376
300 Ga0451576_0004228
301 Ga0451576_0005891
302 Ga0495638_0000858
303 Ga0495650_0031480
304 Ga0495632_0007288
305 Ga0495625_0001336
306 Ga0495661_0002167
307 Ga0495649_0003230
308 Ga0495680_0045252
309 Ga0495683_0000001
310 Ga0495687_002192
311 Ga0496110_0007302
312 Ga0496121_0012491
313 Ga0496121_0016762
314 Ga0496124_0000138
315 Ga0496125_0030678
316 Ga0501309_000954
317 Ga0501310_000726
318 Ga0501068_0001081
319 Ga0501070_0014775
320 Ga0501073_0000411
321 Ga0501074_0009046
322 Ga0501222_002137
323 Ga0501253_001779
324 Ga0501221_001931
325 Ga0501229_000931
326 Ga0501080_0000397
327 Ga0501083_0022388
328 Ga0501241_005221
329 nmdc:mga07m45_5518_c1
330 nmdc:mga07m45_561_c1
331 Ga0500658_0000970
332 Ga0501084_0075902
333 2526211911
334 2649122101
335 2652973553
336 2881715820
337 2919495273
338 2919545540
339 2923526721

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07660

STN

Secretin and TonB N terminus short domain

100

148

0.92

PF07655

Secretin_N_2

Secretin N-terminal domain

152

229

0.91

PF00263

Secretin

Bacterial type II and III secretion system protein

403

586

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
4m0h-assembly2.cif.gz_B crystal structure of a putative anti-sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at 2.50 a resolution 0.8909 55 125
4m0n-assembly1.cif.gz_A crystal structure of a putative anti-sigma factor (bdi_1681) from parabacteroides distasonis atcc 8503 at 1.65 a resolution 0.8757 55 125
6ovm-assembly1.cif.gz_R crystal structure of the pseudomonas capeferrum anti-sigma regulator pupr c-terminal cell-surface signaling domain in complex with the outer membrane transporter pupb n-terminal signaling domain (semet) 0.8591 55 125
4ar0-assembly1.cif.gz_A n0 domain of neisseria meningitidis pilus assembly protein pilq 0.8263 45 123
4jtm-assembly1.cif.gz_A structure of the n0 domain of the type ii secretin from enterotoxigenic escherichia coli 0.7978 54 121
ID Description Score Start End Superfamily
4m0hB02 Alpha Beta;3-Layer(bab) Sandwich;Phage tail protein beta-alpha-beta fold; 0.8812 55 125 3.55.50.30
4g08A01 Alpha Beta;3-Layer(bab) Sandwich;Phage tail protein beta-alpha-beta fold; 0.8549 56 121 3.55.50.30
3gr5A01 Alpha Beta;3-Layer(bab) Sandwich;Phage tail protein beta-alpha-beta fold; 0.8486 50 123 3.55.50.30
4m0hB02 Alpha Beta;3-Layer(bab) Sandwich;Phage tail protein beta-alpha-beta fold; 0.8182 55 125 3.55.50.30
4g08A01 Alpha Beta;3-Layer(bab) Sandwich;Phage tail protein beta-alpha-beta fold; 0.8016 56 121 3.55.50.30
ID Description Score Start End GO Terms
AF-A0A2L1GR55-F1-model_v4 Secretin/TonB short N-terminal domain-containing protein 0.9352 51 123 GO:0009279
AF-A0A444JH63-F1-model_v4 AMIN domain-containing protein 0.926 52 123 GO:0009279
AF-A0A7V2JNF5-F1-model_v4 AMIN domain-containing protein 0.9074 50 123 GO:0009279
AF-A0A376Y155-F1-model_v4 Outer membrane porin HofQ 0.9055 45 123 GO:0009279
AF-A0A090NBR2-F1-model_v4 Type 4 pili secretin pilQ (Outer membrane porin) 0.8875 45 125 GO:0009279

Map