F256394

General Info

Members Datasets Scaffolds Average Seq Length
170 129 341 350

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100230190|Ga0068855_1002301902
Length 382
Sequence MHAFPIEPSGGIENDATLGTPRNRLATRSEDRMSDTQHPEWESFMRRALELAAEGPITGGNPQVGCVLVDADGEIVAEGWHHGAGTPHAEVDALSKLPTRADGRPDAAGLTAVVTLEPCNHTGRTGPCSVALLEAGVARVIYALPDPGKRSSGGADHLRAGGVEVISGVLADEAETFLHRWLTTVARNRPWVTVKWASTLDGRAAASDGSSQWITGTASRQRVHEEREASDAILVGTGTVLADDPSLTARGDAGELMPHQPIPVVVGERPIPADAALRQHPAGLIETGSRDLAAILSDLDARGLRRVYVEGGPTLASAVIAAGFADEFSIYLAPALLGGDMLAVGDLGIPTIGQAIRLRLTAIEQLGDDLHLRAIADVPKEN

Samples

Sample ID Description Type Environment
1 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
2 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
10 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
19 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
30 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
62 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
63 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
64 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
65 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
66 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
67 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
68 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
69 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
70 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
71 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
72 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
73 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
74 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
75 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
76 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
77 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
78 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
79 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
80 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
81 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
82 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
83 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
84 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
92 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
97 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
101 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
102 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
103 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
104 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
105 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
106 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
107 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
108 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
109 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
110 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
111 2643221616 Leifsonia sp. Root227 Isolate Unclassified
112 2643221711 Terrabacter sp. Root85 Isolate Unclassified
113 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
114 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
115 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
116 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
117 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
118 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
119 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
120 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
121 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
122 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
123 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
124 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
125 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
126 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
127 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
128 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
129 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 87.06
Metatranscriptomes 1.76
Isolates 11.18

Biome Distribution

Category Percentage (%)
Aerial Root 0.59
Bulb 0
Endosphere 10.59
Nodule 0
Rhizoplane 11.18
Rhizosphere 61.18
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068855_100230190 3300005563 Bacteria 2076
2 Ga0007423J48922_100499 3300003285 Bacteria 5954
3 rootH1_10116967 3300003316 Bacteria 1596
4 rootH1_10116967 3300003323 Bacteria 1426
5 Ga0070658_10006173 3300005327 Bacteria 9716
6 Ga0070682_100062286 3300005337 Bacteria 2363
7 Ga0068868_100041249 3300005338 Bacteria 3595
8 Ga0070659_100000308 3300005366 Bacteria 38002
9 Ga0070667_100006716 3300005367 Bacteria 9560
10 Ga0068853_100187382 3300005539 Bacteria 1879
11 Ga0070672_100355584 3300005543 Bacteria 1249
12 Ga0068855_100006470 3300005563 Bacteria 14247
13 Ga0068855_100321732 3300005563 Bacteria 1709
14 Ga0068857_100000016 3300005577 Bacteria 97647
15 Ga0068856_100134810 3300005614 Bacteria 2475
16 Ga0068852_100069434 3300005616 Bacteria 3088
17 Ga0068852_100073012 3300005616 Bacteria 3017
18 Ga0068859_100156671 3300005617 Bacteria 2355
19 Ga0068851_10000001 3300005834 Bacteria 495512
20 Ga0068858_100000016 3300005842 Bacteria 193130
21 Ga0075365_10002707 3300006038 Bacteria 8827
22 Ga0075365_10099701 3300006038 Bacteria 1988
23 Ga0075364_10008819 3300006051 Bacteria 6036
24 Ga0075364_10156172 3300006051 Bacteria 1539
25 Ga0075369_10127024 3300006186 Bacteria 1157
26 Ga0097620_100156670 3300006931 Bacteria 2355
27 Ga0105240_10017581 3300009093 Bacteria 9634
28 Ga0105240_10426921 3300009093 Bacteria 1488
29 Ga0105245_10023956 3300009098 Bacteria 5358
30 Ga0105241_10002009 3300009174 Bacteria 15393
31 Ga0105248_10002772 3300009177 Bacteria 19481
32 Ga0105237_10001088 3300009545 Bacteria 36367
33 Ga0105238_10030302 3300009551 Bacteria 5506
34 Ga0105238_10178380 3300009551 Bacteria 2101
35 Ga0105246_10337423 3300011119 Bacteria 1230
36 Ga0163163_10024493 3300014325 Bacteria 5745
37 Ga0157379_10081771 3300014968 Bacteria 2894
38 Ga0206354_10900191 3300020081 Bacteria 4328
39 Ga0224712_10029803 3300022467 Bacteria 1963
40 Ga0209563_101401 3300025230 Bacteria 6448
41 Ga0209148_1007926 3300025254 Bacteria 2167
42 Ga0207656_10000002 3300025321 Bacteria 792178
43 Ga0207705_10060176 3300025909 Bacteria 2743
44 Ga0207654_10000001 3300025911 Bacteria 1816198
45 Ga0207695_10005723 3300025913 Bacteria 16379
46 Ga0207695_10040653 3300025913 Bacteria 4983
47 Ga0207695_10386563 3300025913 Bacteria 1284
48 Ga0207671_10000002 3300025914 Bacteria 1144816
49 Ga0207657_10007047 3300025919 Bacteria 11552
50 Ga0207694_10000022 3300025924 Bacteria 288900
51 Ga0207694_10060928 3300025924 Bacteria 2937
52 Ga0207644_10283363 3300025931 Bacteria 1331
53 Ga0207690_10007435 3300025932 Bacteria 6502
54 Ga0207691_10046827 3300025940 Bacteria 3972
55 Ga0207711_10002845 3300025941 Bacteria 15187
56 Ga0207667_10000571 3300025949 Bacteria 48073
57 Ga0207667_10029971 3300025949 Bacteria 5893
58 Ga0207667_10217861 3300025949 Bacteria 1956
59 Ga0207658_10030457 3300025986 Bacteria 3820
60 Ga0207677_10281007 3300026023 Bacteria 1366
61 Ga0207703_10000075 3300026035 Bacteria 118422
62 Ga0207639_10056517 3300026041 Bacteria 3008
63 Ga0207702_10229154 3300026078 Bacteria 1735
64 Ga0207676_10323742 3300026095 Bacteria 1416
65 Ga0207674_10384831 3300026116 Bacteria 1356
66 Ga0207698_10004573 3300026142 Bacteria 8446
67 Ga0207698_10014785 3300026142 Bacteria 5202
68 Ga0307515_10179813 3300028794 Bacteria 2070
69 Ga0307514_10029647 3300031649 Bacteria 4397
70 Ga0307406_10000710 3300031901 Bacteria 18737
71 Ga0395899_0009356 3300037312 Bacteria 7526
72 Ga0395900_0254027 3300037418 Bacteria 1758
73 Ga0395898_0020618 3300037466 Bacteria 6695
74 Ga0395901_0017036 3300038443 Bacteria 7405
75 Ga0466972_0056273 3300044658 Bacteria 1891
76 Ga0466965_0015337 3300044683 Bacteria 3639
77 Ga0466970_0010848 3300044765 Bacteria 4632
78 Ga0466970_0034225 3300044765 Bacteria 2689
79 Ga0495650_0001841 3300046471 Bacteria 18974
80 Ga0496100_0124973 3300048903 Bacteria 1804
81 Ga0496101_0003084 3300048904 Bacteria 10301
82 Ga0496101_0277965 3300048904 Bacteria 1308
83 Ga0496103_0049315 3300048906 Bacteria 2603
84 Ga0496104_0018298 3300048907 Bacteria 6392
85 Ga0496104_0045624 3300048907 Bacteria 4123
86 Ga0496104_0075267 3300048907 Bacteria 3215
87 Ga0496104_0123778 3300048907 Bacteria 2482
88 Ga0496105_0005613 3300048908 Bacteria 9541
89 Ga0496105_0029480 3300048908 Bacteria 4491
90 Ga0496106_0195260 3300048909 Bacteria 1610
91 Ga0496108_0038585 3300048911 Bacteria 3980
92 Ga0496109_0040787 3300048912 Bacteria 4205
93 Ga0496111_0191754 3300048914 Bacteria 1519
94 Ga0496111_0260681 3300048914 Bacteria 1286
95 Ga0496112_0148950 3300048915 Bacteria 2308
96 Ga0496113_0084287 3300048916 Bacteria 2440
97 Ga0496114_0004254 3300048917 Bacteria 11090
98 Ga0496114_0036543 3300048917 Bacteria 4060
99 Ga0496118_0050694 3300048921 Bacteria 3182
100 Ga0496119_0032331 3300048922 Bacteria 3489
101 Ga0496119_0090909 3300048922 Bacteria 1734
102 Ga0496120_0000899 3300048923 Bacteria 41719
103 Ga0496120_0020145 3300048923 Bacteria 4248
104 Ga0496120_0039041 3300048923 Bacteria 2805
105 Ga0496120_0040659 3300048923 Bacteria 2730
106 Ga0496120_0082057 3300048923 Bacteria 1743
107 Ga0496121_0000025 3300048924 Bacteria 453467
108 Ga0496122_0004690 3300048925 Bacteria 16786
109 Ga0496125_0003079 3300048928 Bacteria 20827
110 Ga0496126_0033648 3300048929 Bacteria 4820
111 Ga0496126_0235697 3300048929 Bacteria 1531
112 Ga0501032_0120159 3300049569 Bacteria 1737
113 Ga0501034_0058428 3300049571 Bacteria 3876
114 Ga0501034_0087131 3300049571 Bacteria 3122
115 Ga0501034_0244069 3300049571 Bacteria 1741
116 Ga0501034_0394980 3300049571 Bacteria 1306
117 Ga0501036_0256296 3300049572 Bacteria 1466
118 Ga0501037_0040208 3300049573 Bacteria 3441
119 Ga0501037_0170532 3300049573 Bacteria 1547
120 Ga0501038_0023260 3300049574 Bacteria 5543
121 Ga0501038_0079365 3300049574 Bacteria 2768
122 Ga0501038_0149131 3300049574 Bacteria 1907
123 Ga0501043_0011638 3300049579 Bacteria 6885
124 Ga0501047_0071996 3300049581 Bacteria 3327
125 Ga0501047_0109849 3300049581 Bacteria 2640
126 Ga0501047_0230303 3300049581 Bacteria 1707
127 Ga0501067_0018709 3300049583 Bacteria 3835
128 Ga0501069_0079715 3300049585 Bacteria 1843
129 Ga0501070_0002470 3300049586 Bacteria 16196
130 Ga0501070_0277462 3300049586 Bacteria 1368
131 Ga0501071_0138951 3300049587 Bacteria 1809
132 Ga0501073_0000012 3300049589 Bacteria 161319
133 Ga0501073_0114995 3300049589 Bacteria 1865
134 Ga0501073_0148189 3300049589 Bacteria 1626
135 Ga0501080_0000025 3300049742 Bacteria 89908
136 Ga0501083_0014426 3300049744 Bacteria 5524
137 Ga0501083_0235206 3300049744 Bacteria 1193
138 Ga0501035_0001017 3300049822 Bacteria 29541
139 Ga0501044_0004920 3300049823 Bacteria 14935
140 Ga0501044_0217326 3300049823 Bacteria 1863
141 nmdc:mga0yw44_104319_c1 3300050492 Bacteria 1810
142 nmdc:mga0yw44_88929_c1 3300050492 Bacteria 1948
143 Ga0500651_0001679 3300053093 Bacteria 11307
144 Ga0500556_0000206 3300053104 Bacteria 48470
145 Ga0500655_001708 3300053133 Bacteria 4135
146 Ga0500559_0000454 3300053136 Bacteria 29202
147 Ga0500568_0018237 3300053139 Bacteria 3077
148 Ga0500577_0006103 3300053142 Bacteria 3298
149 Ga0500590_003298 3300053148 Bacteria 7408
150 Ga0500616_0042466 3300053153 Bacteria 2435
151 Ga0500620_002255 3300053155 Bacteria 3827
152 Ga0501084_0026450 3300054114 Bacteria 4842
153 2644094975 2643221616 Bacteria 4066575
154 2644611042 2643221711 Bacteria 4865335
155 2644679403 2643221724 Bacteria 3593515
156 2730228912 2728369380 Bacteria 3620317
157 2812365190 2811994880 Bacteria 4147780
158 2812375124 2811994882 Bacteria 4688362
159 2819427880 2818991318 Bacteria 5266538
160 2819666759 2818991458 Bacteria 4794049
161 2819691882 2818991462 Bacteria 4320267
162 2819729340 2818991469 Bacteria 4644110
163 2852646360 2852643534 Bacteria 3013378
164 2857727013 2857723135 Bacteria 4217853
165 2857736050 2857733635 Bacteria 3532004
166 2857737603 2857737099 Bacteria 3104305
167 2870624683 2870622029 Bacteria 3643329
168 2906801043 2906799679 Bacteria 4031749
169 2919527158 2919523602 Bacteria 3788128
170 2946043406 2946041624 Bacteria 4191385
171 2984554802 2984551494 Bacteria 3877562
172 Ga0068855_100230190
173 Ga0007423J48922_100499
174 rootH1_10116967
175 Ga0070658_10006173
176 Ga0070682_100062286
177 Ga0068868_100041249
178 Ga0070659_100000308
179 Ga0070667_100006716
180 Ga0068853_100187382
181 Ga0070672_100355584
182 Ga0068855_100006470
183 Ga0068855_100321732
184 Ga0068857_100000016
185 Ga0068856_100134810
186 Ga0068852_100069434
187 Ga0068852_100073012
188 Ga0068859_100156671
189 Ga0068851_10000001
190 Ga0068858_100000016
191 Ga0075365_10002707
192 Ga0075365_10099701
193 Ga0075364_10008819
194 Ga0075364_10156172
195 Ga0075369_10127024
196 Ga0097620_100156670
197 Ga0105240_10017581
198 Ga0105240_10426921
199 Ga0105245_10023956
200 Ga0105241_10002009
201 Ga0105248_10002772
202 Ga0105237_10001088
203 Ga0105238_10030302
204 Ga0105238_10178380
205 Ga0105246_10337423
206 Ga0163163_10024493
207 Ga0157379_10081771
208 Ga0206354_10900191
209 Ga0224712_10029803
210 Ga0209563_101401
211 Ga0209148_1007926
212 Ga0207656_10000002
213 Ga0207705_10060176
214 Ga0207654_10000001
215 Ga0207695_10005723
216 Ga0207695_10040653
217 Ga0207695_10386563
218 Ga0207671_10000002
219 Ga0207657_10007047
220 Ga0207694_10000022
221 Ga0207694_10060928
222 Ga0207644_10283363
223 Ga0207690_10007435
224 Ga0207691_10046827
225 Ga0207711_10002845
226 Ga0207667_10000571
227 Ga0207667_10029971
228 Ga0207667_10217861
229 Ga0207658_10030457
230 Ga0207677_10281007
231 Ga0207703_10000075
232 Ga0207639_10056517
233 Ga0207702_10229154
234 Ga0207676_10323742
235 Ga0207674_10384831
236 Ga0207698_10004573
237 Ga0207698_10014785
238 Ga0307515_10179813
239 Ga0307514_10029647
240 Ga0307406_10000710
241 Ga0395899_0009356
242 Ga0395900_0254027
243 Ga0395898_0020618
244 Ga0395901_0017036
245 Ga0466972_0056273
246 Ga0466965_0015337
247 Ga0466970_0010848
248 Ga0466970_0034225
249 Ga0495650_0001841
250 Ga0496100_0124973
251 Ga0496101_0003084
252 Ga0496101_0277965
253 Ga0496103_0049315
254 Ga0496104_0018298
255 Ga0496104_0045624
256 Ga0496104_0075267
257 Ga0496104_0123778
258 Ga0496105_0005613
259 Ga0496105_0029480
260 Ga0496106_0195260
261 Ga0496108_0038585
262 Ga0496109_0040787
263 Ga0496111_0191754
264 Ga0496111_0260681
265 Ga0496112_0148950
266 Ga0496113_0084287
267 Ga0496114_0004254
268 Ga0496114_0036543
269 Ga0496118_0050694
270 Ga0496119_0032331
271 Ga0496119_0090909
272 Ga0496120_0000899
273 Ga0496120_0020145
274 Ga0496120_0039041
275 Ga0496120_0040659
276 Ga0496120_0082057
277 Ga0496121_0000025
278 Ga0496122_0004690
279 Ga0496125_0003079
280 Ga0496126_0033648
281 Ga0496126_0235697
282 Ga0501032_0120159
283 Ga0501034_0058428
284 Ga0501034_0087131
285 Ga0501034_0244069
286 Ga0501034_0394980
287 Ga0501036_0256296
288 Ga0501037_0040208
289 Ga0501037_0170532
290 Ga0501038_0023260
291 Ga0501038_0079365
292 Ga0501038_0149131
293 Ga0501043_0011638
294 Ga0501047_0071996
295 Ga0501047_0109849
296 Ga0501047_0230303
297 Ga0501067_0018709
298 Ga0501069_0079715
299 Ga0501070_0002470
300 Ga0501070_0277462
301 Ga0501071_0138951
302 Ga0501073_0000012
303 Ga0501073_0114995
304 Ga0501073_0148189
305 Ga0501080_0000025
306 Ga0501083_0014426
307 Ga0501083_0235206
308 Ga0501035_0001017
309 Ga0501044_0004920
310 Ga0501044_0217326
311 nmdc:mga0yw44_104319_c1
312 nmdc:mga0yw44_88929_c1
313 Ga0500651_0001679
314 Ga0500556_0000206
315 Ga0500655_001708
316 Ga0500559_0000454
317 Ga0500568_0018237
318 Ga0500577_0006103
319 Ga0500590_003298
320 Ga0500616_0042466
321 Ga0500620_002255
322 Ga0501084_0026450
323 2644094975
324 2644611042
325 2644679403
326 2730228912
327 2812365190
328 2812375124
329 2819427880
330 2819666759
331 2819691882
332 2819729340
333 2852646360
334 2857727013
335 2857736050
336 2857737603
337 2870624683
338 2906801043
339 2919527158
340 2946043406
341 2984554802

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01872

RibD_C

RibD C-terminal domain

190

372

0.96

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

39

144

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
8dq9-assembly1.cif.gz_B crystal structure of gdp bound 3-dehydroquinate dehydratase i from klebsiella oxytoca 0.8771 23 353
8dqb-assembly1.cif.gz_A crystal structure of 3-dehydroquinate dehydratase i from klebsiella oxytoca (i23 form) 0.8758 18 353
3zpg-assembly1.cif.gz_A-2 acinetobacter baumannii ribd, form 2 0.8748 22 355
3zpc-assembly1.cif.gz_B acinetobacter baumannii ribd, form 1 0.8718 22 356
8dqc-assembly1.cif.gz_A crystal structure of 3-dehydroquinate dehydratase i from klebsiella oxytoca (i222 form) 0.8667 22 353
ID Description Score Start End Superfamily
2hxvA01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.939 20 167 3.40.140.10
2hxvA01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.933 20 167 3.40.140.10
4g3mB01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9326 23 155 3.40.140.10
af_Q8VC04_24_251_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9318 46 62 2.60.40.10
af_P9WPH1_148_338_3.40.430.10 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.9314 164 353 3.40.430.10
ID Description Score Start End GO Terms
AF-A0A7J4SQK8-F1-model_v4 Riboflavin biosynthesis protein RibD 0.9591 28 138 GO:0008270
GO:0008835
AF-A0A1V3WG58-F1-model_v4 RibD C-terminal domain protein 0.958 171 318 GO:0008703
GO:0009231
AF-C0BQ59-F1-model_v4 Cytidine and deoxycytidylate deaminase zinc-binding region 0.9493 20 166 GO:0008835
AF-A0A417ZAM9-F1-model_v4 Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] 0.948 26 357 GO:0008270
GO:0008703
GO:0008835
GO:0009231
AF-A0A7C9PN60-F1-model_v4 Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] 0.9471 28 358 GO:0008703
GO:0008835
GO:0009231
GO:0046872

Map