F256435

General Info

Members Datasets Scaffolds Average Seq Length
170 134 113 419

Family's Representative Sequence

Representative Sequence 3300005842|Ga0068858_100066802|Ga0068858_1000668022
Length 452
Sequence MPGNPAPAPPKPVALPPLQHSSTPPASVPDIAIQVENLSKLYRLGEVGTGSLAHDINRWWHRLSGREDPYVQVGQVNDRTKKAGSDWVWALKDINFEIKQGEAVGIIGRNGAGKSTLLKILSRITAPTSGEIKVKGRIASLLEVGTGFNPELTGKDNIYLNGAILGMRKKEIDGKLDQIVDFSGCEAYLDTPVKRYSSGMQVRLAFAVAAHLDPEILIVDEVLAVGDFSFQKKCLSRMQDVTAEGRTVLFVSHDMQAISTLTSRSLYLKNGAVSFEGGTGDVIRHYLNEGVQKAGSFRTDRVGNSPQILAVEVSTSHPGQVHFQGEPFTVSFEVFTPVSLTNAAFSFCIVDRHDNRIVHAWCFDDEQPVLRESGVHRLTCNFPNLRLHMGNYAVTAFLGEGGGRHYQTLDRACQFEVVMFGRNRSWPWREQDCRYLEEWRWDARLISDVAAL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
3 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
4 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
5 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
6 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
7 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
8 2582581873 Chryseobacterium sp. OV259 Isolate Rhizosphere
9 2585428045 Chryseobacterium sp. OV705 Isolate Rhizosphere
10 2585428060 Chryseobacterium sp. OV715 Isolate Rhizosphere
11 2585428061 Chryseobacterium sp. CF356 Isolate Rhizosphere
12 2585428115 Chryseobacterium sp. YR561 Isolate Rhizosphere
13 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
14 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
15 2585428184 Chryseobacterium sp. YR480 Isolate Rhizosphere
16 2585428185 Chryseobacterium sp. YR459 Isolate Rhizosphere
17 2588253712 Chryseobacterium sp. OV279 Isolate Rhizosphere
18 2588254255 Chryseobacterium sp. YR221 Isolate Rhizosphere
19 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
20 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
21 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
22 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
23 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
24 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
25 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
26 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
27 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
28 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
29 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
30 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
31 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
32 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
33 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
34 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
35 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
36 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
37 2871720351 Chryseobacterium sp. KLBC 52 Isolate Nodule
38 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
39 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
40 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
41 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
42 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
43 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
44 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
45 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
46 2919399522 Chryseobacterium sp. 2987 Isolate Unclassified
47 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
48 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
49 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
50 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
51 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
52 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
53 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
54 2993480792 Chryseobacterium nepalense SLBN-92 Isolate Rhizosphere
55 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
56 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
57 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
58 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
59 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
60 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
61 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
62 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
63 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
64 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
65 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
66 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
67 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
68 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
69 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
70 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
71 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
72 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
73 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
74 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
75 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
76 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
77 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
78 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
79 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
80 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
81 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
82 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
86 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
87 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
88 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
89 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
94 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
95 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
99 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
100 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
101 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
102 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
103 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
104 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
105 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
106 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
107 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
108 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
112 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
113 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
114 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
119 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
122 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
123 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
124 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
125 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
126 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
127 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
128 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
129 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
130 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
131 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
132 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
133 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
134 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 65.88
Metatranscriptomes 0.59
Isolates 33.53

Biome Distribution

Category Percentage (%)
Aerial Root 1.18
Bulb 0
Endosphere 4.71
Nodule 2.94
Rhizoplane 1.18
Rhizosphere 66.47
Stem 0
Stem Tuber 0
Unclassified 23.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1663050 2162886007 Bacteria 482194
2 SwRhRL2b_contig_690199 2162886007 Bacteria 1927
3 JGI24741J21665_1000053 3300001915 Bacteria 28323
4 JGI24033J26618_1000016 3300002155 Bacteria 29345
5 Ga0006562J51391_1006498 3300003578 Bacteria 16015
6 Ga0065714_10002476 3300005288 Bacteria 16393
7 Ga0065714_10011987 3300005288 Bacteria 2370
8 Ga0065714_10012866 3300005288 Bacteria 3142
9 Ga0065704_10070140 3300005289 Bacteria 482257
10 Ga0065704_10070627 3300005289 Bacteria 18948
11 Ga0065704_10072494 3300005289 Bacteria 8425
12 Ga0065715_10160897 3300005293 Bacteria 1560
13 Ga0070682_100031492 3300005337 Bacteria 3208
14 Ga0070689_100148400 3300005340 Bacteria 1890
15 Ga0070668_100005392 3300005347 Bacteria 9493
16 Ga0070678_100001877 3300005456 Bacteria 11341
17 Ga0070679_100000239 3300005530 Bacteria 45591
18 Ga0068858_100066802 3300005842 Bacteria 3330
19 Ga0099824_1000610 3300006942 Bacteria 43941
20 Ga0099826_10000133 3300006948 Bacteria 31897
21 Ga0105244_10000005 3300009036 Bacteria 481412
22 Ga0105244_10000027 3300009036 Bacteria 207569
23 Ga0111539_10347119 3300009094 Bacteria 1727
24 Ga0105243_10000216 3300009148 Bacteria 67300
25 Ga0105243_10110092 3300009148 Bacteria 2302
26 Ga0157373_10000032 3300013100 Bacteria 126310
27 Ga0157373_10000047 3300013100 Bacteria 110376
28 Ga0157371_10000069 3300013102 Bacteria 165391
29 Ga0157371_10000664 3300013102 Bacteria 40881
30 Ga0157371_10011521 3300013102 Bacteria 6801
31 Ga0157370_10000154 3300013104 Bacteria 84734
32 Ga0157370_10000468 3300013104 Bacteria 50304
33 Ga0157370_10001978 3300013104 Bacteria 25174
34 Ga0157370_10042785 3300013104 Bacteria 4362
35 Ga0157370_10104912 3300013104 Unclassified 2646
36 Ga0157369_10000939 3300013105 Bacteria 37034
37 Ga0157372_10006889 3300013307 Bacteria 12091
38 Ga0157375_10000141 3300013308 Bacteria 72136
39 Ga0182008_10000003 3300014497 Bacteria 456880
40 Ga0182006_1000328 3300015261 Bacteria 41149
41 Ga0182006_1000348 3300015261 Bacteria 39305
42 Ga0182006_1000444 3300015261 Bacteria 32794
43 Ga0163161_10000039 3300017792 Bacteria 148130
44 Ga0163161_10000863 3300017792 Bacteria 23632
45 Ga0209675_1000066 3300025291 Bacteria 171883
46 Ga0207655_1000016 3300025728 Bacteria 551476
47 Ga0207655_1000038 3300025728 Bacteria 348340
48 Ga0207709_10000084 3300025935 Bacteria 161002
49 Ga0207702_10146995 3300026078 Bacteria 2140
50 Ga0209489_108050 3300027361 Bacteria 14912
51 Ga0209282_1006192 3300027666 Bacteria 7414
52 Ga0307408_100000268 3300031548 Bacteria 52325
53 Ga0307516_10000540 3300031730 Bacteria 50545
54 Ga0307413_10000066 3300031824 Bacteria 25897
55 Ga0307412_10000027 3300031911 Bacteria 214663
56 Ga0307412_10008629 3300031911 Bacteria 5827
57 Ga0307416_100000006 3300032002 Bacteria 466074
58 Ga0307416_100000329 3300032002 Bacteria 24530
59 Ga0307414_10000227 3300032004 Bacteria 36891
60 Ga0307414_10002803 3300032004 Bacteria 9184
61 Ga0307414_10005887 3300032004 Bacteria 6785
62 Ga0307414_10035955 3300032004 Bacteria 3301
63 Ga0307411_10000004 3300032005 Bacteria 460327
64 Ga0307510_10047652 3300033180 Bacteria 4588
65 Ga0395899_0000006 3300037312 Bacteria 666341
66 Ga0395899_0013825 3300037312 Bacteria 6168
67 Ga0395900_0101333 3300037418 Unclassified 2958
68 Ga0395898_0038679 3300037466 Bacteria 4726
69 Ga0395898_0071579 3300037466 Bacteria 3350
70 Ga0400490_48759 3300038726 Bacteria 15842
71 Ga0439447_001206 3300041407 Bacteria 9414
72 Ga0439465_0003550 3300041413 Bacteria 5082
73 Ga0453684_0000044 3300044712 Bacteria 585643
74 Ga0495627_000022 3300046453 Bacteria 254672
75 Ga0495610_0000005 3300046512 Bacteria 924111
76 Ga0495663_0000093 3300046525 Bacteria 39511
77 Ga0495663_0001020 3300046525 Bacteria 9258
78 Ga0495654_0000003 3300046530 Bacteria 863485
79 Ga0495609_0000003 3300046538 Bacteria 711547
80 Ga0495660_0025234 3300046810 Bacteria 3377
81 Ga0495686_0000069 3300047472 Bacteria 217778
82 Ga0495686_0091975 3300047472 Bacteria 1841
83 Ga0496102_0017191 3300048905 Bacteria 6333
84 Ga0496105_0112280 3300048908 Bacteria 2249
85 Ga0496116_0000024 3300048919 Bacteria 471420
86 Ga0496116_0000029 3300048919 Bacteria 422187
87 Ga0496117_0000007 3300048920 Bacteria 720505
88 Ga0496118_0000104 3300048921 Bacteria 157435
89 Ga0496119_0000007 3300048922 Bacteria 475920
90 Ga0496121_0021178 3300048924 Bacteria 6384
91 Ga0496122_0000222 3300048925 Bacteria 126693
92 Ga0496122_0000724 3300048925 Bacteria 64522
93 Ga0496122_0003160 3300048925 Bacteria 22018
94 Ga0496122_0003562 3300048925 Bacteria 20353
95 Ga0496122_0009530 3300048925 Bacteria 10205
96 Ga0496123_0000592 3300048926 Bacteria 61754
97 Ga0496123_0014775 3300048926 Bacteria 6446
98 Ga0496124_0005164 3300048927 Bacteria 14855
99 Ga0496125_0000018 3300048928 Bacteria 482390
100 Ga0496125_0000498 3300048928 Bacteria 68479
101 Ga0496125_0012483 3300048928 Bacteria 8430
102 Ga0496126_0000534 3300048929 Bacteria 73515
103 Ga0501249_000029 3300049679 Bacteria 86766
104 Ga0501249_002798 3300049679 Bacteria 3512
105 Ga0501266_000002 3300049763 Bacteria 459947
106 Ga0501269_000031 3300049766 Bacteria 44939
107 Ga0500646_0001042 3300053090 Bacteria 7578
108 Ga0500641_0000028 3300053096 Bacteria 105996
109 Ga0500594_0001221 3300053118 Bacteria 5556
110 Ga0500658_0000002 3300053134 Bacteria 548440
111 Ga0500559_0038976 3300053136 Bacteria 2066
112 Ga0500568_0001850 3300053139 Bacteria 13039
113 Ga0500584_037325 3300053726 Bacteria 2239

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009094 Ga0111539_10347119 Ga0111539_103471192 365
2 3300005340 Ga0070689_100148400 Ga0070689_1001484002 379
3 iso_pu_bacteria 2582581873 2585425995 396
4 iso_pu_bacteria 2585428115 2587944698 396
5 3300037312 Ga0395899_0000006 Ga0395899_0000006_40693_41925 397
6 3300037418 Ga0395900_0101333 Ga0395900_0101333_1388_2620 397
7 iso_pu_bacteria 2585428182 2588211392 398
8 iso_pu_bacteria 2585428184 2588219167 398
9 iso_pu_bacteria 2816332188 2816875422 398
10 iso_pu_bacteria 2842083920 2842087280 398
11 iso_pu_bacteria 2905999023 2905999089 398
12 iso_pu_bacteria 2993480792 2993482053 398
13 3300013100 Ga0157373_10000032 Ga0157373_1000003254 399
14 3300013102 Ga0157371_10011521 Ga0157371_100115218 399
15 3300046453 Ga0495627_000022 Ga0495627_000022_113161_114387 400
16 3300046530 Ga0495654_0000003 Ga0495654_0000003_603967_605193 400
17 3300047472 Ga0495686_0091975 Ga0495686_0091975_92_1318 400
18 iso_pu_bacteria 2585428061 2587752530 400
19 3300013104 Ga0157370_10104912 Ga0157370_101049122 401
20 3300025291 Ga0209675_1000066 Ga0209675_1000066151 402
21 3300031911 Ga0307412_10000027 Ga0307412_1000002721 402
22 3300032002 Ga0307416_100000006 Ga0307416_100000006190 402
23 3300046512 Ga0495610_0000005 Ga0495610_0000005_306257_307492 402
24 3300046525 Ga0495663_0000093 Ga0495663_0000093_22779_24020 402
25 3300046538 Ga0495609_0000003 Ga0495609_0000003_606384_607625 402
26 3300048919 Ga0496116_0000029 Ga0496116_0000029_202442_203677 402
27 3300048925 Ga0496122_0003562 Ga0496122_0003562_5223_6458 402
28 3300048926 Ga0496123_0014775 Ga0496123_0014775_3928_5163 402
29 3300048927 Ga0496124_0005164 Ga0496124_0005164_2763_3998 402
30 3300048928 Ga0496125_0000498 Ga0496125_0000498_17896_19131 402
31 3300013102 Ga0157371_10000069 Ga0157371_1000006917 404
32 3300037466 Ga0395898_0071579 Ga0395898_0071579_77_1384 404
33 3300013307 Ga0157372_10006889 Ga0157372_100068898 405
34 iso_pu_bacteria 2588254255 2590603087 405
35 iso_pu_bacteria 2919399522 2919403297 405
36 iso_pu_bacteria 2958458903 2958461940 405
37 iso_pu_bacteria 2511231000 2511235060 406
38 iso_pu_bacteria 2582581281 2585159074 406
39 iso_pu_bacteria 2582581282 2585163339 406
40 iso_pu_bacteria 2585428060 2587746336 406
41 iso_pu_bacteria 2588253712 2588447454 406
42 iso_pu_bacteria 2588254257 2590610090 406
43 iso_pu_bacteria 2728369107 2729200891 406
44 iso_pu_bacteria 2871720351 2871723494 406
45 iso_pu_bacteria 2946019816 2946023978 406
46 iso_pu_bacteria 2977243572 2977243632 406
47 iso_pu_bacteria 2984572630 2984574368 406
48 iso_pu_bacteria 2984606641 2984607818 406
49 iso_pu_bacteria 8055419101 8055423511 406
50 3300013104 Ga0157370_10042785 Ga0157370_100427852 407
51 3300048924 Ga0496121_0021178 Ga0496121_0021178_2094_3356 407
52 iso_pu_bacteria 2582581278 2585140987 407
53 iso_pu_bacteria 2585428045 2587677127 407
54 iso_pu_bacteria 2585428183 2588215769 407
55 iso_pu_bacteria 2585428185 2588224668 407
56 iso_pu_bacteria 2751185877 2753674101 407
57 iso_pu_bacteria 2765235839 2765575569 407
58 iso_pu_bacteria 2772190705 2772603792 407
59 iso_pu_bacteria 2775506739 2775674422 407
60 iso_pu_bacteria 2816332280 2817413482 407
61 iso_pu_bacteria 2889290771 2889293920 407
62 iso_pu_bacteria 2919097161 2919098038 407
63 3300005347 Ga0070668_100005392 Ga0070668_1000053923 408
64 3300005842 Ga0068858_100066802 Ga0068858_1000668022 408
65 3300009148 Ga0105243_10000216 Ga0105243_1000021646 408
66 3300015261 Ga0182006_1000348 Ga0182006_10003483 408
67 3300025935 Ga0207709_10000084 Ga0207709_100000843 408
68 3300031730 Ga0307516_10000540 Ga0307516_1000054024 408
69 3300032004 Ga0307414_10035955 Ga0307414_100359551 408
70 3300048925 Ga0496122_0009530 Ga0496122_0009530_5567_6817 408
71 3300053136 Ga0500559_0038976 Ga0500559_0038976_611_1876 408
72 3300053726 Ga0500584_037325 Ga0500584_037325_209_1468 408
73 iso_pu_bacteria 2513020052 2513232430 408
74 iso_pu_bacteria 2519899754 2520879598 408
75 iso_pu_bacteria 2643221716 2644643871 408
76 iso_pu_bacteria 2857618242 2857619785 408
77 iso_pu_bacteria 2904419702 2904422334 408
78 iso_pu_bacteria 2904555929 2904558556 408
79 3300002155 JGI24033J26618_1000016 JGI24033J26618_100001622 409
80 3300005293 Ga0065715_10160897 Ga0065715_101608971 409
81 3300005456 Ga0070678_100001877 Ga0070678_1000018774 409
82 3300013308 Ga0157375_10000141 Ga0157375_100001417 409
83 iso_pu_bacteria 2643221667 2644373994 409
84 iso_pu_bacteria 2643221725 2644681765 409
85 iso_pu_bacteria 2802428842 2802654601 409
86 iso_pu_bacteria 2977268062 2977272013 409
87 3300003578 Ga0006562J51391_1006498 Ga0006562J51391_100649815 410
88 3300005288 Ga0065714_10011987 Ga0065714_100119872 410
89 3300005530 Ga0070679_100000239 Ga0070679_10000023910 410
90 3300013104 Ga0157370_10000468 Ga0157370_1000046842 410
91 3300014497 Ga0182008_10000003 Ga0182008_1000000391 410
92 3300017792 Ga0163161_10000039 Ga0163161_1000003976 410
93 3300032004 Ga0307414_10002803 Ga0307414_100028036 410
94 3300032004 Ga0307414_10005887 Ga0307414_100058873 410
95 3300046525 Ga0495663_0001020 Ga0495663_0001020_4945_6207 410
96 3300048925 Ga0496122_0003160 Ga0496122_0003160_9048_10301 410
97 3300049763 Ga0501266_000002 Ga0501266_000002_295197_296465 410
98 3300053139 Ga0500568_0001850 Ga0500568_0001850_3620_4915 410
99 iso_pu_bacteria 2643221600 2644009263 410
100 iso_pu_bacteria 2919191525 2919194290 410
101 iso_pu_bacteria 2929150217 2929150545 410
102 iso_pu_bacteria 8054307821 8054311494 410
103 iso_pu_bacteria 8056440228 8056443455 410
104 3300001915 JGI24741J21665_1000053 JGI24741J21665_100005313 411
105 3300005289 Ga0065704_10072494 Ga0065704_100724942 411
106 3300005337 Ga0070682_100031492 Ga0070682_1000314922 411
107 3300009036 Ga0105244_10000005 Ga0105244_10000005337 411
108 3300009036 Ga0105244_10000027 Ga0105244_10000027135 411
109 3300009148 Ga0105243_10110092 Ga0105243_101100923 411
110 3300013104 Ga0157370_10001978 Ga0157370_1000197810 411
111 3300025728 Ga0207655_1000016 Ga0207655_1000016336 411
112 3300025728 Ga0207655_1000038 Ga0207655_1000038136 411
113 3300031824 Ga0307413_10000066 Ga0307413_1000006612 411
114 3300031911 Ga0307412_10008629 Ga0307412_100086293 411
115 3300032002 Ga0307416_100000329 Ga0307416_1000003295 411
116 3300032005 Ga0307411_10000004 Ga0307411_1000000470 411
117 3300033180 Ga0307510_10047652 Ga0307510_100476523 411
118 3300038726 Ga0400490_48759 Ga0400490_48759_2324_3604 411
119 3300041407 Ga0439447_001206 Ga0439447_001206_2705_3979 411
120 3300041413 Ga0439465_0003550 Ga0439465_0003550_2522_3781 411
121 3300046810 Ga0495660_0025234 Ga0495660_0025234_193_1452 411
122 3300047472 Ga0495686_0000069 Ga0495686_0000069_90672_91931 411
123 3300048905 Ga0496102_0017191 Ga0496102_0017191_4305_5564 411
124 3300048908 Ga0496105_0112280 Ga0496105_0112280_85_1344 411
125 3300048920 Ga0496117_0000007 Ga0496117_0000007_202271_203530 411
126 3300048921 Ga0496118_0000104 Ga0496118_0000104_123162_124421 411
127 3300048922 Ga0496119_0000007 Ga0496119_0000007_202338_203597 411
128 3300048925 Ga0496122_0000222 Ga0496122_0000222_77562_78821 411
129 3300048925 Ga0496122_0000724 Ga0496122_0000724_57065_58324 411
130 3300048926 Ga0496123_0000592 Ga0496123_0000592_6697_7956 411
131 3300048928 Ga0496125_0000018 Ga0496125_0000018_318611_319885 411
132 3300048928 Ga0496125_0012483 Ga0496125_0012483_5833_7092 411
133 3300048929 Ga0496126_0000534 Ga0496126_0000534_41933_43207 411
134 3300049679 Ga0501249_002798 Ga0501249_002798_1260_2534 411
135 3300049766 Ga0501269_000031 Ga0501269_000031_3162_4424 411
136 3300053118 Ga0500594_0001221 Ga0500594_0001221_1708_2967 411
137 3300053134 Ga0500658_0000002 Ga0500658_0000002_249214_250485 411
138 iso_pu_bacteria 2738541279 2738733003 411
139 iso_pu_bacteria 2738541285 2738765541 411
140 iso_pu_bacteria 2738543007 2739214584 411
141 2162886007 SwRhRL2b_contig_690199 SwRhRL2b_0594.00001250 412
142 3300005288 Ga0065714_10012866 Ga0065714_100128662 412
143 3300005289 Ga0065704_10070627 Ga0065704_100706274 412
144 3300013100 Ga0157373_10000047 Ga0157373_1000004766 412
145 3300013104 Ga0157370_10000154 Ga0157370_1000015437 412
146 3300013105 Ga0157369_10000939 Ga0157369_100009399 412
147 3300015261 Ga0182006_1000328 Ga0182006_100032838 412
148 3300031548 Ga0307408_100000268 Ga0307408_10000026837 412
149 3300044712 Ga0453684_0000044 Ga0453684_0000044_403172_404449 412
150 3300048919 Ga0496116_0000024 Ga0496116_0000024_153625_154893 412
151 3300049679 Ga0501249_000029 Ga0501249_000029_48158_49435 412
152 iso_pu_bacteria 2903895155 2903898719 412
153 iso_pu_bacteria 8055592153 8055595135 412
154 3300006942 Ga0099824_1000610 Ga0099824_100061035 413
155 3300006948 Ga0099826_10000133 Ga0099826_1000013319 413
156 3300013102 Ga0157371_10000664 Ga0157371_1000066434 413
157 3300015261 Ga0182006_1000444 Ga0182006_10004443 413
158 3300017792 Ga0163161_10000863 Ga0163161_1000086321 413
159 3300027361 Ga0209489_108050 Ga0209489_10805011 413
160 3300027666 Ga0209282_1006192 Ga0209282_10061922 413
161 3300032004 Ga0307414_10000227 Ga0307414_1000022727 413
162 3300037312 Ga0395899_0013825 Ga0395899_0013825_230_1534 413
163 3300037466 Ga0395898_0038679 Ga0395898_0038679_3283_4587 413
164 iso_pu_bacteria 2881359912 2881364166 413
165 3300053090 Ga0500646_0001042 Ga0500646_0001042_1082_2377 414
166 3300053096 Ga0500641_0000028 Ga0500641_0000028_60165_61460 414
167 3300005288 Ga0065714_10002476 Ga0065714_100024766 415
168 3300026078 Ga0207702_10146995 Ga0207702_101469951 415
169 2162886007 SwRhRL2b_contig_1663050 SwRhRL2b_0644.00006140 418
170 3300005289 Ga0065704_10070140 Ga0065704_10070140327 418

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

91

224

0.94

PF14524

Wzt_C

Wzt C-terminal domain

305

426

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dd0-assembly1.cif.gz_C crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.9496 1 258
7dd0-assembly1.cif.gz_A crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.9346 1 258
7dd0-assembly2.cif.gz_D crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.9237 1 258
6an5-assembly1.cif.gz_A crystal structure of the nucelotide binding domain of an o-antigen polysaccharide abc-transporter 0.9086 59 260
7dd0-assembly2.cif.gz_B crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.8981 2 258
ID Description Score Start End Superfamily
af_X2JG15_1642_1882_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8791 3 257 3.40.50.300
af_Q2G2L1_4_262_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8776 5 264 3.40.50.300
af_P72047_42_272_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8679 60 256 3.40.50.300
af_Q2FVS3_1_233_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8594 4 255 3.40.50.300
af_P36879_1_236_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8562 1 256 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A1G1KRG7-F1-model_v4 ABC transporter domain-containing protein 0.9364 2 260 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-Q07698-F1-model_v4 ABC transporter protein AbcA 0.9315 2 264 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A6P0J235-F1-model_v4 ABC transporter ATP-binding protein 0.931 60 260 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A6N7ZGK5-F1-model_v4 ATP-binding cassette domain-containing protein 0.9172 1 259 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A644ZL00-F1-model_v4 Teichoic acids export ATP-binding protein TagH 0.9154 5 260 GO:0005524
GO:0016020
GO:0016887
GO:0140359

Feature Viewer

pLDDT pTM Quality
74.38 0.52 Medium
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Predicted Structure (AlphaFold2)

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