F257752

General Info

Members Datasets Scaffolds Average Seq Length
170 126 340 670

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2818991444|2819586220
Length 702
Sequence RLFYFLTFKTIYNQTMQDTSKEFQPFVPAEANVKEFTIKAIIMGCLFGIIFGAANVYLALKAGLTVSASIPIAVIAITLGRRLLKTTILENNIIQTAGSAGESIASGVVFTLPGFLFLTEPASASYFNYMTILTLAIFGGILGTLMMIPLRRSLIVKEHGNLPYPEGTACASVLKAGEKGGNVAQTAFYGLGFAFVYAMLQKVFRVISELPSFATAQANRFFPSARLSSEITPEYLGVGYIIGLRISGLLVAGGVLSWFVFIPLLASVVPADVIAAQLVKLGYLSDLTAAGGPGDWNPATHTFGDWSDAIYRAYVRQIGAGAVAAGGFITLFKTLPTIVSSFKGSLGAIKTDKTNKADIRRTERDLDVRIVGVGSLVLVALMTVLPQIPGDSIISKLVIGVLVVIFGAFFVTVSSRIVGLIGSSNNPISGMTIATIMGTCLVFIAVGWTGKIYEPLALVVGGMICIAAANAGATSQDLKTGYIVGATPKYQQIALFAGAIVSSLAIGATVKILDTPSQALLAKGIHHAIGSDAYPAPQGTLMATLVKGILSFNLDWQFVLAGAAIAVVMELCGIQALSFAVGVYLPLSTTLPIFAGGAVRGIVDWNRKRKGEAVAAEAGEEDLGKGNLFATGLVAGGAIAGVLVAFASANENVSNFLAKLSAESGLTRLFGETGYMLLGAAFFVAMAVVLYRIAIKKEDPMI

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
12 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
17 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
18 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
19 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
20 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
21 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
22 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
23 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
24 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
42 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
43 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
45 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
46 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
47 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
49 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
73 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
74 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
75 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
88 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
89 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
90 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
91 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
92 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
93 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
94 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
98 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
99 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
102 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
103 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
104 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
105 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
106 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
107 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
110 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
113 2818991444 Filimonas endophytica 3197 Isolate Unclassified
114 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
115 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
116 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
117 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
118 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
119 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
120 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
121 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
122 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
123 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
124 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
125 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
126 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.76
Metatranscriptomes 0
Isolates 8.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.71
Nodule 0
Rhizoplane 0
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 5.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10003791 3300001979 Bacteria 6580
2 JGI24739J22299_10007464 3300001989 Bacteria 4101
3 JGI24751J29686_10000381 3300002459 Bacteria 14912
4 JGI25154J39366_1000002 3300002738 Bacteria 466942
5 JGI25153J46596_10000187 3300003215 Bacteria 60030
6 rootH1_10047522 3300003316 Bacteria 3062
7 rootH2_10021057 3300003320 Bacteria 19112
8 rootL2_10056995 3300003322 Bacteria 7382
9 rootL2_10062473 3300003322 Bacteria 2967
10 rootH1_10011198 3300003323 Bacteria 5427
11 rootH1_10025022 3300003323 Bacteria 5671
12 JGI25160J50197_1002116 3300003354 Bacteria 9442
13 JGI25160J50197_1004078 3300003354 Bacteria 6359
14 Ga0055535_1001641 3300003761 Bacteria 10446
15 Ga0055528_1000422 3300003790 Bacteria 34012
16 Ga0055530_10000475 3300003791 Bacteria 34908
17 Ga0055531_10000014 3300003794 Bacteria 184532
18 Ga0055531_10000438 3300003794 Bacteria 39137
19 Ga0065165_1000258 3300005262 Bacteria 91861
20 Ga0065704_10074725 3300005289 Bacteria 6055
21 Ga0070683_100007163 3300005329 Bacteria 9405
22 Ga0068869_100018054 3300005334 Bacteria 4795
23 Ga0070682_100000019 3300005337 Bacteria 220844
24 Ga0070669_100008105 3300005353 Bacteria 7506
25 Ga0070688_100016358 3300005365 Bacteria 4240
26 Ga0070659_100001789 3300005366 Bacteria 15467
27 Ga0070662_100010599 3300005457 Bacteria 6058
28 Ga0068867_100077813 3300005459 Bacteria 2493
29 Ga0068853_100024724 3300005539 Bacteria 5038
30 Ga0070664_100013889 3300005564 Bacteria 6567
31 Ga0068852_100000417 3300005616 Bacteria 28355
32 Ga0068859_100000272 3300005617 Bacteria 51348
33 Ga0068859_100003439 3300005617 Bacteria 16091
34 Ga0068864_100005772 3300005618 Bacteria 10160
35 Ga0068861_100054657 3300005719 Bacteria 3042
36 Ga0075366_10006283 3300006195 Bacteria 6498
37 Ga0097621_100016949 3300006237 Bacteria 5522
38 Ga0097620_100000272 3300006931 Bacteria 51348
39 Ga0097620_100003439 3300006931 Bacteria 16091
40 Ga0105247_10002720 3300009101 Bacteria 11852
41 Ga0105242_10065612 3300009176 Bacteria 2995
42 Ga0105242_10080809 3300009176 Unclassified 2717
43 Ga0105249_10001920 3300009553 Bacteria 18039
44 Ga0105249_10003915 3300009553 Bacteria 12858
45 Ga0105249_10038125 3300009553 Unclassified 4360
46 Ga0157370_10017897 3300013104 Bacteria 7137
47 Ga0157369_10050474 3300013105 Bacteria 4505
48 Ga0163163_10041735 3300014325 Bacteria 4488
49 Ga0209258_100029 3300025242 Bacteria 490648
50 Ga0209646_1000005 3300025246 Bacteria 717627
51 Ga0209026_1000169 3300025250 Bacteria 100088
52 Ga0209148_1000089 3300025254 Bacteria 253548
53 Ga0209673_1000049 3300025273 Bacteria 286207
54 Ga0209130_1000976 3300025284 Bacteria 22454
55 Ga0209758_1000346 3300025297 Bacteria 84821
56 Ga0209758_1008745 3300025297 Bacteria 6465
57 Ga0209050_1000272 3300025298 Bacteria 110636
58 Ga0209050_1014782 3300025298 Bacteria 3333
59 Ga0207426_1000104 3300025302 Bacteria 249464
60 Ga0207426_1000233 3300025302 Bacteria 127848
61 Ga0207426_1000381 3300025302 Bacteria 76038
62 Ga0207426_1001311 3300025302 Bacteria 21230
63 Ga0207426_1007103 3300025302 Bacteria 4735
64 Ga0207426_1010278 3300025302 Bacteria 3641
65 Ga0209257_1000004 3300025304 Bacteria 1678347
66 Ga0209257_1000005 3300025304 Bacteria 1592528
67 Ga0209257_1003403 3300025304 Bacteria 13702
68 Ga0207682_10002162 3300025893 Bacteria 8897
69 Ga0207710_10001091 3300025900 Bacteria 13952
70 Ga0207647_10003135 3300025904 Bacteria 12418
71 Ga0207650_10011976 3300025925 Bacteria 5979
72 Ga0207659_10046384 3300025926 Bacteria 3068
73 Ga0207690_10009402 3300025932 Bacteria 5806
74 Ga0207669_10003828 3300025937 Bacteria 6556
75 Ga0207691_10007498 3300025940 Bacteria 10499
76 Ga0207689_10002854 3300025942 Bacteria 15942
77 Ga0207689_10086441 3300025942 Bacteria 2577
78 Ga0207679_10053947 3300025945 Bacteria 2957
79 Ga0207712_10000864 3300025961 Bacteria 22096
80 Ga0207712_10019578 3300025961 Unclassified 4423
81 Ga0207676_10085622 3300026095 Unclassified 2573
82 Ga0207674_10025201 3300026116 Bacteria 6346
83 Ga0207675_100010424 3300026118 Bacteria 8704
84 Ga0207683_10103902 3300026121 Unclassified 2538
85 Ga0207698_10004850 3300026142 Bacteria 8241
86 Ga0268264_10014264 3300028381 Bacteria 6532
87 Ga0307515_10000001 3300028794 Bacteria 4259510
88 Ga0307515_10000016 3300028794 Bacteria 554870
89 Ga0265327_10000013 3300031251 Bacteria 519549
90 Ga0436365_1122703 3300039437 Bacteria 4045
91 Ga0436365_1520014 3300039437 Bacteria 3841
92 Ga0436365_1684945 3300039437 Bacteria 47686
93 Ga0466972_0000051 3300044658 Bacteria 114011
94 Ga0453684_0070413 3300044712 Bacteria 4429
95 Ga0453684_0078610 3300044712 Bacteria 4127
96 Ga0495627_002511 3300046453 Bacteria 8752
97 Ga0495638_0000036 3300046460 Bacteria 275731
98 Ga0495633_0000025 3300046558 Bacteria 218627
99 Ga0496121_0000008 3300048924 Bacteria 843593
100 Ga0501031_0001662 3300049568 Bacteria 13960
101 Ga0501032_0000735 3300049569 Bacteria 26625
102 Ga0501032_0001336 3300049569 Bacteria 19664
103 Ga0501034_0000004 3300049571 Bacteria 382255
104 Ga0501034_0005058 3300049571 Bacteria 14487
105 Ga0501034_0010961 3300049571 Bacteria 9415
106 Ga0501034_0018023 3300049571 Bacteria 7244
107 Ga0501034_0082020 3300049571 Bacteria 3227
108 Ga0501036_0002739 3300049572 Bacteria 13935
109 Ga0501036_0014920 3300049572 Bacteria 6481
110 Ga0501036_0020151 3300049572 Bacteria 5600
111 Ga0501036_0064094 3300049572 Bacteria 3111
112 Ga0501037_0001415 3300049573 Bacteria 17601
113 Ga0501037_0032394 3300049573 Bacteria 3859
114 Ga0501038_0001686 3300049574 Bacteria 20477
115 Ga0501038_0019921 3300049574 Bacteria 6038
116 Ga0501043_0003796 3300049579 Bacteria 12422
117 Ga0501043_0005005 3300049579 Bacteria 10725
118 Ga0501043_0014779 3300049579 Bacteria 6113
119 Ga0501043_0034001 3300049579 Bacteria 4010
120 Ga0501046_0009951 3300049580 Bacteria 8191
121 Ga0501047_0002818 3300049581 Bacteria 16500
122 Ga0501048_0005121 3300049582 Bacteria 9988
123 Ga0501070_0010634 3300049586 Bacteria 7777
124 Ga0501073_0000302 3300049589 Bacteria 32545
125 Ga0501074_0003934 3300049590 Bacteria 10588
126 Ga0501077_0037068 3300049593 Unclassified 3107
127 Ga0501207_001960 3300049654 Unclassified 2629
128 Ga0501219_000030 3300049703 Bacteria 22707
129 Ga0501080_0021078 3300049742 Bacteria 6032
130 Ga0501083_0000211 3300049744 Bacteria 37931
131 Ga0501241_000494 3300049758 Bacteria 8503
132 Ga0501035_0005274 3300049822 Bacteria 12234
133 Ga0501044_0001926 3300049823 Bacteria 24024
134 Ga0501044_0002128 3300049823 Bacteria 22711
135 Ga0501044_0002402 3300049823 Bacteria 21355
136 Ga0501044_0098684 3300049823 Bacteria 2940
137 Ga0501045_0015634 3300049824 Bacteria 5384
138 Ga0501284_00051 3300050005 Bacteria 43498
139 nmdc:mga0k408_10647_c1 3300050493 Unclassified 4979
140 nmdc:mga08y16_191559_c1 3300050511 Bacteria 2121
141 Ga0500644_0000039 3300053088 Bacteria 78834
142 Ga0500644_0008081 3300053088 Bacteria 2766
143 Ga0500562_000027 3300053108 Bacteria 100118
144 Ga0500559_0010964 3300053136 Bacteria 3882
145 Ga0500568_0002431 3300053139 Bacteria 10963
146 Ga0500577_0001218 3300053142 Bacteria 6586
147 Ga0500604_0009443 3300053151 Bacteria 2599
148 Ga0500616_0000004 3300053153 Bacteria 1002714
149 Ga0500622_0000014 3300053156 Bacteria 368189
150 Ga0500622_0000020 3300053156 Bacteria 271239
151 Ga0500622_0000151 3300053156 Bacteria 73392
152 Ga0500622_0001381 3300053156 Bacteria 19563
153 Ga0500636_0007878 3300053177 Bacteria 6161
154 Ga0500645_002866 3300053730 Bacteria 7390
155 Ga0501084_0047046 3300054114 Bacteria 3613
156 Ga0501082_0069064 3300060353 Unclassified 3042
157 2819586220 2818991444 Bacteria 6968812
158 2819576653 2818991442 Bacteria 8318214
159 2819677410 2818991460 Bacteria 7595395
160 2821143118 2821136567 Bacteria 8080116
161 2884797329 2884791551 Bacteria 8511252
162 2896114322 2896109856 Bacteria 7140722
163 2904470838 2904467357 Bacteria 8057758
164 2929158870 2929154850 Bacteria 6753285
165 2929177201 2929177148 Bacteria 7883697
166 2929239623 2929239360 Bacteria 7745570
167 2929921253 2929921140 Bacteria 8649150
168 2945979568 2945977869 Bacteria 7777518
169 2946014564 2946013367 Bacteria 7766675
170 8003156170 8003151029 Bacteria 8187759
171 JGI24740J21852_10003791
172 JGI24739J22299_10007464
173 JGI24751J29686_10000381
174 JGI25154J39366_1000002
175 JGI25153J46596_10000187
176 rootH1_10047522
177 rootH2_10021057
178 rootL2_10056995
179 rootL2_10062473
180 rootH1_10011198
181 rootH1_10025022
182 JGI25160J50197_1002116
183 JGI25160J50197_1004078
184 Ga0055535_1001641
185 Ga0055528_1000422
186 Ga0055530_10000475
187 Ga0055531_10000014
188 Ga0055531_10000438
189 Ga0065165_1000258
190 Ga0065704_10074725
191 Ga0070683_100007163
192 Ga0068869_100018054
193 Ga0070682_100000019
194 Ga0070669_100008105
195 Ga0070688_100016358
196 Ga0070659_100001789
197 Ga0070662_100010599
198 Ga0068867_100077813
199 Ga0068853_100024724
200 Ga0070664_100013889
201 Ga0068852_100000417
202 Ga0068859_100000272
203 Ga0068859_100003439
204 Ga0068864_100005772
205 Ga0068861_100054657
206 Ga0075366_10006283
207 Ga0097621_100016949
208 Ga0097620_100000272
209 Ga0097620_100003439
210 Ga0105247_10002720
211 Ga0105242_10065612
212 Ga0105242_10080809
213 Ga0105249_10001920
214 Ga0105249_10003915
215 Ga0105249_10038125
216 Ga0157370_10017897
217 Ga0157369_10050474
218 Ga0163163_10041735
219 Ga0209258_100029
220 Ga0209646_1000005
221 Ga0209026_1000169
222 Ga0209148_1000089
223 Ga0209673_1000049
224 Ga0209130_1000976
225 Ga0209758_1000346
226 Ga0209758_1008745
227 Ga0209050_1000272
228 Ga0209050_1014782
229 Ga0207426_1000104
230 Ga0207426_1000233
231 Ga0207426_1000381
232 Ga0207426_1001311
233 Ga0207426_1007103
234 Ga0207426_1010278
235 Ga0209257_1000004
236 Ga0209257_1000005
237 Ga0209257_1003403
238 Ga0207682_10002162
239 Ga0207710_10001091
240 Ga0207647_10003135
241 Ga0207650_10011976
242 Ga0207659_10046384
243 Ga0207690_10009402
244 Ga0207669_10003828
245 Ga0207691_10007498
246 Ga0207689_10002854
247 Ga0207689_10086441
248 Ga0207679_10053947
249 Ga0207712_10000864
250 Ga0207712_10019578
251 Ga0207676_10085622
252 Ga0207674_10025201
253 Ga0207675_100010424
254 Ga0207683_10103902
255 Ga0207698_10004850
256 Ga0268264_10014264
257 Ga0307515_10000001
258 Ga0307515_10000016
259 Ga0265327_10000013
260 Ga0436365_1122703
261 Ga0436365_1520014
262 Ga0436365_1684945
263 Ga0466972_0000051
264 Ga0453684_0070413
265 Ga0453684_0078610
266 Ga0495627_002511
267 Ga0495638_0000036
268 Ga0495633_0000025
269 Ga0496121_0000008
270 Ga0501031_0001662
271 Ga0501032_0000735
272 Ga0501032_0001336
273 Ga0501034_0000004
274 Ga0501034_0005058
275 Ga0501034_0010961
276 Ga0501034_0018023
277 Ga0501034_0082020
278 Ga0501036_0002739
279 Ga0501036_0014920
280 Ga0501036_0020151
281 Ga0501036_0064094
282 Ga0501037_0001415
283 Ga0501037_0032394
284 Ga0501038_0001686
285 Ga0501038_0019921
286 Ga0501043_0003796
287 Ga0501043_0005005
288 Ga0501043_0014779
289 Ga0501043_0034001
290 Ga0501046_0009951
291 Ga0501047_0002818
292 Ga0501048_0005121
293 Ga0501070_0010634
294 Ga0501073_0000302
295 Ga0501074_0003934
296 Ga0501077_0037068
297 Ga0501207_001960
298 Ga0501219_000030
299 Ga0501080_0021078
300 Ga0501083_0000211
301 Ga0501241_000494
302 Ga0501035_0005274
303 Ga0501044_0001926
304 Ga0501044_0002128
305 Ga0501044_0002402
306 Ga0501044_0098684
307 Ga0501045_0015634
308 Ga0501284_00051
309 nmdc:mga0k408_10647_c1
310 nmdc:mga08y16_191559_c1
311 Ga0500644_0000039
312 Ga0500644_0008081
313 Ga0500562_000027
314 Ga0500559_0010964
315 Ga0500568_0002431
316 Ga0500577_0001218
317 Ga0500604_0009443
318 Ga0500616_0000004
319 Ga0500622_0000014
320 Ga0500622_0000020
321 Ga0500622_0000151
322 Ga0500622_0001381
323 Ga0500636_0007878
324 Ga0500645_002866
325 Ga0501084_0047046
326 Ga0501082_0069064
327 2819586220
328 2819576653
329 2819677410
330 2821143118
331 2884797329
332 2896114322
333 2904470838
334 2929158870
335 2929177201
336 2929239623
337 2929921253
338 2945979568
339 2946014564
340 8003156170

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03169

OPT

OPT oligopeptide transporter protein

35

648

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7wst-assembly1.cif.gz_A cryo-em structure of the barley yellow stripe 1 transporter in complex with fe(iii)-dma 0.5885 15 641
7wst-assembly1.cif.gz_A cryo-em structure of the barley yellow stripe 1 transporter in complex with fe(iii)-dma 0.5789 15 641
5xtc-assembly1.cif.gz_V cryo-em structure of human respiratory complex i transmembrane arm 0.3471 335 470
5xtc-assembly1.cif.gz_V cryo-em structure of human respiratory complex i transmembrane arm 0.3119 335 470
6zo7-assembly1.cif.gz_A 3-formylrifamycin sv binding to the access pocket of acrb-g619p l and t protomer 0.3076 354 490
ID Description Score Start End Superfamily
af_P71749_10_605_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7787 18 629 1.20.1740.10
af_P71749_10_605_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.7738 18 629 1.20.1740.10
af_Q54D87_360_584_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3695 358 537 1.20.1250.20
af_P9WJW7_210_393_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3666 291 534 1.20.1250.20
af_Q556Y5_341_577_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.3645 358 547 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A7Y4QAC6-F1-model_v4 Oligopeptide transporter, OPT family 0.9346 1 603 GO:0016020
GO:0035673
AF-A0A7Y4QAC6-F1-model_v4 Oligopeptide transporter, OPT family 0.9301 1 603 GO:0016020
GO:0035673
AF-A0A4Q3NJK3-F1-model_v4 Peptide transporter 0.9035 228 682 GO:0016020
GO:0035673
AF-A0A2V9MJB6-F1-model_v4 Oligopeptide transporter, OPT family 0.9034 6 627 GO:0016020
GO:0035673
AF-A0A496SRQ8-F1-model_v4 Oligopeptide transporter, OPT family 0.8964 6 568 GO:0016020
GO:0035673

Map