F258013

General Info

Members Datasets Scaffolds Average Seq Length
171 114 342 359

Family's Representative Sequence

Representative Sequence 3300005329|Ga0070683_100116850|Ga0070683_1001168503
Length 383
Sequence MRSPLDTTPAADGFRMPAEWEPHAGCWMAWPERPDNWRLGAEPAQEAYAAVASAIAASEPVTMAVSDGQFERARAALPDSVRVVELSTDDAWLRDTGPTFVLDGAGGRRGVDWRFNAWGGLEGGLYFPWDRDERVAAKVLEVEGDPRYVAPLVLEGGSIHVDGEGTVLTTEQCLLNPNRNPELDRAAIEAALHAHLGTEKVVWLGDGVFEDETDGHVDNLACFARPGMVLLTWVEDPDDPQHAVSRDALERLEAATDARGRSLEVIKLPAPGPLAATAEEAAGVKAVGGTRPRRAGDRLAASYVNFYVANSHVVYPLLDPARDEEAAAIIAAAFPDREVVGVPAREILLGGGNIHCITQQVPAPAATWGRLAASSVAPLGSRT

Samples

Sample ID Description Type Environment
1 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
8 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
20 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
23 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
24 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
25 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
39 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
40 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
41 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
42 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
43 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
44 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
45 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
46 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
47 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
48 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
52 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
53 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
54 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
55 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
56 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
57 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
58 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
59 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
60 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
61 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
62 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
63 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
64 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
65 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
66 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
67 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
68 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
69 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
70 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
71 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
72 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
79 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
80 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
81 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
82 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
83 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
84 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
85 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
86 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
102 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
103 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
109 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
111 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
113 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
114 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.83
Metatranscriptomes 0
Isolates 1.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.58
Nodule 0
Rhizoplane 11.11
Rhizosphere 73.68
Stem 0
Stem Tuber 0
Unclassified 1.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070683_100116850 3300005329 Bacteria 2519
2 Ga0070658_10063752 3300005327 Bacteria 3005
3 Ga0070683_100022206 3300005329 Bacteria 5668
4 Ga0070666_10013915 3300005335 Bacteria 5112
5 Ga0070666_10038337 3300005335 Bacteria 3188
6 Ga0068868_100012806 3300005338 Bacteria 6135
7 Ga0070689_100087886 3300005340 Bacteria 2446
8 Ga0070688_100005975 3300005365 Bacteria 6452
9 Ga0070663_100000859 3300005455 Bacteria 16482
10 Ga0070685_10001560 3300005466 Bacteria 12073
11 Ga0070699_100021235 3300005518 Bacteria 5599
12 Ga0070699_100292280 3300005518 Bacteria 1461
13 Ga0070679_100037721 3300005530 Bacteria 4802
14 Ga0070672_100000004 3300005543 Bacteria 129970
15 Ga0070665_100051052 3300005548 Bacteria 4149
16 Ga0070664_100054027 3300005564 Bacteria 3407
17 Ga0068856_100002319 3300005614 Bacteria 19601
18 Ga0068859_100015590 3300005617 Bacteria 7636
19 Ga0068851_10005514 3300005834 Bacteria 5734
20 Ga0081455_10090685 3300005937 Bacteria 2477
21 Ga0097620_100015591 3300006931 Bacteria 7636
22 Ga0105245_10000283 3300009098 Bacteria 48302
23 Ga0105245_10011020 3300009098 Bacteria 7868
24 Ga0105247_10004151 3300009101 Bacteria 9298
25 Ga0105239_10206892 3300010375 Bacteria 2199
26 Ga0163162_10050458 3300013306 Bacteria 4172
27 Ga0157375_10002378 3300013308 Bacteria 16278
28 Ga0157376_10072535 3300014969 Bacteria 2929
29 Ga0157376_10218358 3300014969 Bacteria 1764
30 Ga0207656_10002952 3300025321 Bacteria 5803
31 Ga0207710_10000580 3300025900 Bacteria 21659
32 Ga0207680_10002472 3300025903 Bacteria 8628
33 Ga0207680_10005659 3300025903 Bacteria 5980
34 Ga0207660_10186265 3300025917 Bacteria 1614
35 Ga0207652_10000307 3300025921 Bacteria 50351
36 Ga0207659_10000020 3300025926 Bacteria 151552
37 Ga0207687_10000007 3300025927 Bacteria 604185
38 Ga0207687_10006313 3300025927 Bacteria 7836
39 Ga0207691_10000020 3300025940 Bacteria 133465
40 Ga0207661_10005666 3300025944 Bacteria 8811
41 Ga0207661_10028785 3300025944 Bacteria 4259
42 Ga0207658_10033339 3300025986 Bacteria 3673
43 Ga0207658_10346917 3300025986 Bacteria 1292
44 Ga0207678_10008282 3300026067 Bacteria 9160
45 Ga0207702_10000016 3300026078 Bacteria 226633
46 Ga0268266_10000247 3300028379 Bacteria 91489
47 Ga0265337_1001823 3300028556 Bacteria 10220
48 Ga0265319_1000005 3300028563 Bacteria 249025
49 Ga0265319_1000035 3300028563 Bacteria 117269
50 Ga0265318_10001598 3300028577 Bacteria 13110
51 Ga0265336_10000002 3300028666 Bacteria 830172
52 Ga0265338_10000001 3300028800 Bacteria 1177449
53 Ga0265338_10000171 3300028800 Bacteria 120054
54 Ga0265338_10006486 3300028800 Bacteria 14895
55 Ga0265324_10007140 3300029957 Bacteria 4567
56 Ga0265320_10051748 3300031240 Bacteria 1991
57 Ga0265325_10005914 3300031241 Bacteria 7497
58 Ga0265340_10000001 3300031247 Bacteria 1647668
59 Ga0265339_10023049 3300031249 Bacteria 3602
60 Ga0265339_10054567 3300031249 Bacteria 2170
61 Ga0265331_10001870 3300031250 Bacteria 14848
62 Ga0265331_10028469 3300031250 Bacteria 2794
63 Ga0265327_10004085 3300031251 Bacteria 13202
64 Ga0265316_10012509 3300031344 Bacteria 7606
65 Ga0265316_10109709 3300031344 Bacteria 2091
66 Ga0265316_10247539 3300031344 Bacteria 1310
67 Ga0265313_10004127 3300031595 Bacteria 11295
68 Ga0265314_10078794 3300031711 Bacteria 2180
69 Ga0307415_100124623 3300032126 Bacteria 1939
70 Ga0316574_0180229 3300035398 Unclassified 1359
71 Ga0395900_0045178 3300037418 Bacteria 4537
72 Ga0395901_0035723 3300038443 Bacteria 5135
73 Ga0439438_015822 3300041405 Bacteria 2208
74 Ga0439447_033819 3300041407 Unclassified 1273
75 Ga0439461_0041600 3300041410 Bacteria 994
76 Ga0439434_0016122 3300042435 Unclassified 2232
77 Ga0466963_0030445 3300044694 Bacteria 3483
78 Ga0466958_0045517 3300045836 Bacteria 2647
79 Ga0495629_0000218 3300046459 Bacteria 51219
80 Ga0495606_0000211 3300046507 Bacteria 103386
81 Ga0495628_0000323 3300046516 Bacteria 43212
82 Ga0495587_0050698 3300046536 Bacteria 2456
83 Ga0495684_0001109 3300047471 Bacteria 21683
84 Ga0496102_0016228 3300048905 Bacteria 6508
85 Ga0496102_0149603 3300048905 Bacteria 2193
86 Ga0496103_0013825 3300048906 Bacteria 4792
87 Ga0496103_0028467 3300048906 Bacteria 3391
88 Ga0496103_0049389 3300048906 Bacteria 2601
89 Ga0496104_0000002 3300048907 Bacteria 686017
90 Ga0496104_0006262 3300048907 Bacteria 10460
91 Ga0496104_0032939 3300048907 Bacteria 4825
92 Ga0496105_0000001 3300048908 Bacteria 1328178
93 Ga0496105_0044846 3300048908 Bacteria 3648
94 Ga0496108_0000150 3300048911 Bacteria 67068
95 Ga0496108_0162904 3300048911 Bacteria 1928
96 Ga0496109_0000007 3300048912 Bacteria 247554
97 Ga0496110_0000033 3300048913 Bacteria 65539
98 Ga0496111_0000125 3300048914 Bacteria 33642
99 Ga0496112_0001891 3300048915 Bacteria 16517
100 Ga0496113_0000007 3300048916 Bacteria 95884
101 Ga0496115_0000015 3300048918 Bacteria 200845
102 Ga0496115_0000305 3300048918 Bacteria 41805
103 Ga0496116_0004412 3300048919 Bacteria 13448
104 Ga0496117_0001071 3300048920 Bacteria 41518
105 Ga0496117_0013864 3300048920 Bacteria 6990
106 Ga0496118_0000174 3300048921 Bacteria 115950
107 Ga0496118_0004985 3300048921 Bacteria 15350
108 Ga0496119_0004707 3300048922 Bacteria 13419
109 Ga0496119_0005540 3300048922 Bacteria 12028
110 Ga0496119_0012761 3300048922 Bacteria 6784
111 Ga0496119_0022487 3300048922 Bacteria 4512
112 Ga0496119_0059464 3300048922 Bacteria 2295
113 Ga0496120_0011279 3300048923 Bacteria 6156
114 Ga0496120_0012901 3300048923 Bacteria 5656
115 Ga0496120_0026765 3300048923 Bacteria 3557
116 Ga0496121_0011110 3300048924 Bacteria 10049
117 Ga0496121_0025226 3300048924 Bacteria 5649
118 Ga0496121_0035289 3300048924 Bacteria 4485
119 Ga0496121_0096918 3300048924 Bacteria 2287
120 Ga0496121_0099588 3300048924 Bacteria 2246
121 Ga0496121_0116459 3300048924 Bacteria 2027
122 Ga0496124_0131690 3300048927 Bacteria 1986
123 Ga0496125_0030779 3300048928 Bacteria 4794
124 Ga0496126_0021368 3300048929 Bacteria 6320
125 Ga0496126_0042775 3300048929 Bacteria 4182
126 Ga0496126_0082250 3300048929 Bacteria 2845
127 Ga0496126_0197795 3300048929 Bacteria 1699
128 Ga0501031_0010455 3300049568 Bacteria 6044
129 Ga0501032_0013510 3300049569 Bacteria 5805
130 Ga0501033_0001230 3300049570 Bacteria 22966
131 Ga0501034_0056665 3300049571 Bacteria 3942
132 Ga0501036_0015200 3300049572 Bacteria 6426
133 Ga0501037_0003173 3300049573 Bacteria 11932
134 Ga0501038_0019496 3300049574 Bacteria 6112
135 Ga0501040_0029679 3300049576 Bacteria 3693
136 Ga0501042_0047764 3300049578 Bacteria 3052
137 Ga0501043_0015464 3300049579 Bacteria 5977
138 Ga0501046_0005091 3300049580 Bacteria 11789
139 Ga0501047_0003010 3300049581 Bacteria 15995
140 Ga0501047_0004352 3300049581 Bacteria 13321
141 Ga0501047_0021042 3300049581 Bacteria 6265
142 Ga0501047_0101648 3300049581 Bacteria 2754
143 Ga0501047_0140446 3300049581 Bacteria 2294
144 Ga0501047_0185877 3300049581 Bacteria 1943
145 Ga0501048_0013723 3300049582 Bacteria 6011
146 Ga0501070_0000006 3300049586 Bacteria 226569
147 Ga0501070_0001442 3300049586 Bacteria 21250
148 Ga0501070_0009904 3300049586 Bacteria 8056
149 Ga0501070_0015749 3300049586 Bacteria 6358
150 Ga0501070_0166417 3300049586 Bacteria 1817
151 Ga0501070_0198091 3300049586 Bacteria 1649
152 Ga0501071_0003214 3300049587 Bacteria 10178
153 Ga0501072_0121196 3300049588 Bacteria 2083
154 Ga0501073_0004815 3300049589 Bacteria 10129
155 Ga0501073_0048916 3300049589 Bacteria 2966
156 Ga0501074_0004041 3300049590 Bacteria 10466
157 Ga0501074_0091419 3300049590 Bacteria 2179
158 Ga0501079_0003758 3300049741 Bacteria 11210
159 Ga0501079_0022506 3300049741 Bacteria 4833
160 Ga0501080_0417144 3300049742 Bacteria 1206
161 Ga0501083_0009444 3300049744 Bacteria 6889
162 Ga0501083_0013347 3300049744 Bacteria 5744
163 Ga0501083_0031047 3300049744 Bacteria 3666
164 Ga0501044_0003363 3300049823 Bacteria 18035
165 Ga0501044_0004879 3300049823 Bacteria 14988
166 Ga0501044_0216479 3300049823 Bacteria 1867
167 Ga0495619_0000022 3300053085 Bacteria 184144
168 Ga0500595_047060 3300053119 Bacteria 1353
169 Ga0501082_0074467 3300060353 Bacteria 2924
170 2883292374 2883291878 Bacteria 5894118
171 2883355355 2883354860 Bacteria 5865246
172 Ga0070683_100116850
173 Ga0070658_10063752
174 Ga0070683_100022206
175 Ga0070666_10013915
176 Ga0070666_10038337
177 Ga0068868_100012806
178 Ga0070689_100087886
179 Ga0070688_100005975
180 Ga0070663_100000859
181 Ga0070685_10001560
182 Ga0070699_100021235
183 Ga0070699_100292280
184 Ga0070679_100037721
185 Ga0070672_100000004
186 Ga0070665_100051052
187 Ga0070664_100054027
188 Ga0068856_100002319
189 Ga0068859_100015590
190 Ga0068851_10005514
191 Ga0081455_10090685
192 Ga0097620_100015591
193 Ga0105245_10000283
194 Ga0105245_10011020
195 Ga0105247_10004151
196 Ga0105239_10206892
197 Ga0163162_10050458
198 Ga0157375_10002378
199 Ga0157376_10072535
200 Ga0157376_10218358
201 Ga0207656_10002952
202 Ga0207710_10000580
203 Ga0207680_10002472
204 Ga0207680_10005659
205 Ga0207660_10186265
206 Ga0207652_10000307
207 Ga0207659_10000020
208 Ga0207687_10000007
209 Ga0207687_10006313
210 Ga0207691_10000020
211 Ga0207661_10005666
212 Ga0207661_10028785
213 Ga0207658_10033339
214 Ga0207658_10346917
215 Ga0207678_10008282
216 Ga0207702_10000016
217 Ga0268266_10000247
218 Ga0265337_1001823
219 Ga0265319_1000005
220 Ga0265319_1000035
221 Ga0265318_10001598
222 Ga0265336_10000002
223 Ga0265338_10000001
224 Ga0265338_10000171
225 Ga0265338_10006486
226 Ga0265324_10007140
227 Ga0265320_10051748
228 Ga0265325_10005914
229 Ga0265340_10000001
230 Ga0265339_10023049
231 Ga0265339_10054567
232 Ga0265331_10001870
233 Ga0265331_10028469
234 Ga0265327_10004085
235 Ga0265316_10012509
236 Ga0265316_10109709
237 Ga0265316_10247539
238 Ga0265313_10004127
239 Ga0265314_10078794
240 Ga0307415_100124623
241 Ga0316574_0180229
242 Ga0395900_0045178
243 Ga0395901_0035723
244 Ga0439438_015822
245 Ga0439447_033819
246 Ga0439461_0041600
247 Ga0439434_0016122
248 Ga0466963_0030445
249 Ga0466958_0045517
250 Ga0495629_0000218
251 Ga0495606_0000211
252 Ga0495628_0000323
253 Ga0495587_0050698
254 Ga0495684_0001109
255 Ga0496102_0016228
256 Ga0496102_0149603
257 Ga0496103_0013825
258 Ga0496103_0028467
259 Ga0496103_0049389
260 Ga0496104_0000002
261 Ga0496104_0006262
262 Ga0496104_0032939
263 Ga0496105_0000001
264 Ga0496105_0044846
265 Ga0496108_0000150
266 Ga0496108_0162904
267 Ga0496109_0000007
268 Ga0496110_0000033
269 Ga0496111_0000125
270 Ga0496112_0001891
271 Ga0496113_0000007
272 Ga0496115_0000015
273 Ga0496115_0000305
274 Ga0496116_0004412
275 Ga0496117_0001071
276 Ga0496117_0013864
277 Ga0496118_0000174
278 Ga0496118_0004985
279 Ga0496119_0004707
280 Ga0496119_0005540
281 Ga0496119_0012761
282 Ga0496119_0022487
283 Ga0496119_0059464
284 Ga0496120_0011279
285 Ga0496120_0012901
286 Ga0496120_0026765
287 Ga0496121_0011110
288 Ga0496121_0025226
289 Ga0496121_0035289
290 Ga0496121_0096918
291 Ga0496121_0099588
292 Ga0496121_0116459
293 Ga0496124_0131690
294 Ga0496125_0030779
295 Ga0496126_0021368
296 Ga0496126_0042775
297 Ga0496126_0082250
298 Ga0496126_0197795
299 Ga0501031_0010455
300 Ga0501032_0013510
301 Ga0501033_0001230
302 Ga0501034_0056665
303 Ga0501036_0015200
304 Ga0501037_0003173
305 Ga0501038_0019496
306 Ga0501040_0029679
307 Ga0501042_0047764
308 Ga0501043_0015464
309 Ga0501046_0005091
310 Ga0501047_0003010
311 Ga0501047_0004352
312 Ga0501047_0021042
313 Ga0501047_0101648
314 Ga0501047_0140446
315 Ga0501047_0185877
316 Ga0501048_0013723
317 Ga0501070_0000006
318 Ga0501070_0001442
319 Ga0501070_0009904
320 Ga0501070_0015749
321 Ga0501070_0166417
322 Ga0501070_0198091
323 Ga0501071_0003214
324 Ga0501072_0121196
325 Ga0501073_0004815
326 Ga0501073_0048916
327 Ga0501074_0004041
328 Ga0501074_0091419
329 Ga0501079_0003758
330 Ga0501079_0022506
331 Ga0501080_0417144
332 Ga0501083_0009444
333 Ga0501083_0013347
334 Ga0501083_0031047
335 Ga0501044_0003363
336 Ga0501044_0004879
337 Ga0501044_0216479
338 Ga0495619_0000022
339 Ga0500595_047060
340 Ga0501082_0074467
341 2883292374
342 2883355355

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04371

PAD_porph

Porphyromonas-type peptidyl-arginine deiminase

15

362

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6nic-assembly1.cif.gz_B crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9853 1 347
6nic-assembly2.cif.gz_C crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9838 1 347
6nic-assembly2.cif.gz_D crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9825 1 347
2q3u-assembly2.cif.gz_B ensemble refinement of the protein crystal structure of gene product from arabidopsis thaliana at5g08170, agmatine iminohydrolase 0.982 1 347
3h7k-assembly1.cif.gz_A crystal structure of arabidopsis thaliana agmatine deiminase complexed with a covalently bound reaction intermediate 0.9813 1 347
ID Description Score Start End Superfamily
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9774 2 347 3.75.10.10
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9525 2 347 3.75.10.10
2ewoA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9518 2 347 3.75.10.10
2ewoA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9171 2 347 3.75.10.10
1xknA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9132 1 347 3.75.10.10
ID Description Score Start End GO Terms
AF-A0A6D2KCS2-F1-model_v4 Agmatine deiminase 0.9994 1 84 GO:0004668
GO:0009446
GO:0047632
AF-A0A7X5ATK8-F1-model_v4 Agmatine deiminase (EC 3.5.3.12) 0.9953 2 236 GO:0004668
GO:0009446
GO:0047632
AF-A0A436JNY0-F1-model_v4 deleted 0.995 2 256
AF-A0A0P6Y7T8-F1-model_v4 Putative agmatine deiminase (EC 3.5.3.12) (Agmatine iminohydrolase) 0.9942 1 349 GO:0004668
GO:0009446
GO:0047632
AF-A0A127F600-F1-model_v4 Putative agmatine deiminase (EC 3.5.3.12) (Agmatine iminohydrolase) 0.994 1 348 GO:0004668
GO:0009446
GO:0047632

Map