F258351

General Info

Members Datasets Scaffolds Average Seq Length
171 132 342 478

Family's Representative Sequence

Representative Sequence 3300005548|Ga0070665_100000128|Ga0070665_10000012818
Length 507
Sequence MPARGMDLLMSAKTRDMADGPTESMAAAQGSTPAQTEMANRLGLTGPSGSRRRGAMLRRLLAAGDWVAIFAALCAATALTSTTDVAKLFWAVLFTPAWLLVLKLHGLYDNDHRRIRHSTLDELPSLISASALGTIVLDGLLWLSPGGALSAKSAIIVGIGAVLACFVSRAVLRFVWQRLTGVAIGIVIGPANLVDVVARRIATHPEARLQLVGYLSAPRDKDRQASLPRLGSIEEISRVARAHNVERVVVAEQEMGERDVEHLIEECKSAGLGLTFLPKHYGLLGPGIELNRLAELPVLDFRFSDPPRSTLALKRGLDLLISGLMLTLLSPLLAAISLWIVVDSGTPVFFRQKRAGKAGEPFTMLKFRTMVTDAEERLAELVDLEKLDEPAFKIVDDPRITRAGKLLRRTSLDELPQLINVLRGDMSLVGPRPEEEAVVALYDERQRARLAVKPGLTGPMQVYGRGDLTFEERLAMERDYLDNLSVAGDLAILLRTPRAIVRGEGAY

Samples

Sample ID Description Type Environment
1 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
39 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
68 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
76 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
77 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
78 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
79 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
80 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
81 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
82 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
83 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
84 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
85 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
86 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
87 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
88 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
89 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
90 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
91 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
95 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
96 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
97 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
98 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
99 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
100 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
101 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
102 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
103 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
104 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
105 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
106 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
107 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
108 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
109 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
110 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
113 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
114 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
115 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
116 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
117 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
118 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
119 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
120 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
121 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
122 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
123 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
124 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
125 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
128 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
129 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
130 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
131 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
132 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.17
Nodule 0
Rhizoplane 10.53
Rhizosphere 87.72
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070665_100000128 3300005548 Bacteria 142568
2 Ga0070683_100024447 3300005329 Bacteria 5412
3 Ga0070670_100172399 3300005331 Bacteria 1877
4 Ga0070677_10000019 3300005333 Bacteria 50177
5 Ga0070682_100000038 3300005337 Bacteria 145670
6 Ga0068868_100006035 3300005338 Bacteria 8557
7 Ga0070661_100000524 3300005344 Bacteria 29415
8 Ga0070675_100000008 3300005354 Bacteria 250004
9 Ga0070674_100000105 3300005356 Bacteria 39263
10 Ga0070659_100030953 3300005366 Bacteria 4143
11 Ga0070659_100048008 3300005366 Bacteria 3352
12 Ga0070713_100066396 3300005436 Bacteria 3033
13 Ga0070678_100108517 3300005456 Bacteria 2167
14 Ga0070662_100000015 3300005457 Bacteria 109379
15 Ga0068867_100000293 3300005459 Bacteria 32772
16 Ga0070684_100001385 3300005535 Bacteria 17404
17 Ga0070693_100003601 3300005547 Bacteria 7234
18 Ga0070664_100014586 3300005564 Bacteria 6410
19 Ga0068854_100015181 3300005578 Bacteria 5097
20 Ga0068856_100011985 3300005614 Bacteria 8397
21 Ga0068866_10000006 3300005718 Bacteria 176129
22 Ga0068863_100000039 3300005841 Bacteria 161450
23 Ga0068858_100000350 3300005842 Bacteria 48492
24 Ga0068860_100012539 3300005843 Bacteria 8346
25 Ga0081539_10012270 3300005985 Bacteria 6637
26 Ga0081539_10025849 3300005985 Bacteria 3764
27 Ga0070715_10000003 3300006163 Bacteria 345282
28 Ga0075430_100044576 3300006846 Bacteria 3749
29 Ga0075431_100004559 3300006847 Bacteria 13608
30 Ga0075433_10000307 3300006852 Bacteria 29603
31 Ga0075434_100040522 3300006871 Bacteria 4612
32 Ga0068865_100000009 3300006881 Bacteria 168291
33 Ga0111539_10001267 3300009094 Bacteria 33710
34 Ga0111539_10135954 3300009094 Bacteria 2878
35 Ga0105245_10000012 3300009098 Bacteria 267151
36 Ga0105245_10000067 3300009098 Bacteria 107929
37 Ga0105245_10000246 3300009098 Bacteria 51410
38 Ga0114129_10195169 3300009147 Bacteria 2746
39 Ga0105243_10197863 3300009148 Bacteria 1760
40 Ga0105238_10000014 3300009551 Bacteria 241954
41 Ga0105249_10000159 3300009553 Bacteria 82172
42 Ga0157374_10026400 3300013296 Bacteria 5226
43 Ga0157374_10116237 3300013296 Bacteria 2577
44 Ga0157375_10013174 3300013308 Bacteria 7352
45 Ga0157375_10066373 3300013308 Bacteria 3602
46 Ga0157380_10000594 3300014326 Bacteria 22281
47 Ga0157379_10013351 3300014968 Bacteria 7192
48 Ga0207682_10000090 3300025893 Bacteria 41635
49 Ga0207642_10000001 3300025899 Bacteria 714030
50 Ga0207642_10000003 3300025899 Bacteria 650651
51 Ga0207642_10000004 3300025899 Bacteria 407822
52 Ga0207685_10000003 3300025905 Bacteria 344527
53 Ga0207649_10000610 3300025920 Bacteria 24162
54 Ga0207652_10000119 3300025921 Bacteria 86757
55 Ga0207694_10000008 3300025924 Bacteria 484902
56 Ga0207650_10197526 3300025925 Bacteria 1610
57 Ga0207659_10000049 3300025926 Bacteria 82923
58 Ga0207687_10000011 3300025927 Bacteria 388349
59 Ga0207687_10000012 3300025927 Bacteria 370729
60 Ga0207687_10000325 3300025927 Bacteria 32487
61 Ga0207700_10074017 3300025928 Bacteria 2633
62 Ga0207664_10001798 3300025929 Bacteria 14136
63 Ga0207690_10030268 3300025932 Bacteria 3451
64 Ga0207706_10000062 3300025933 Bacteria 109344
65 Ga0207669_10000070 3300025937 Bacteria 51898
66 Ga0207704_10000009 3300025938 Bacteria 198266
67 Ga0207661_10009813 3300025944 Bacteria 6874
68 Ga0207679_10004220 3300025945 Bacteria 8927
69 Ga0207679_10014705 3300025945 Bacteria 5152
70 Ga0207667_10105595 3300025949 Bacteria 2906
71 Ga0207712_10000003 3300025961 Bacteria 615314
72 Ga0207712_10067649 3300025961 Bacteria 2557
73 Ga0207677_10000787 3300026023 Bacteria 18192
74 Ga0207703_10000185 3300026035 Bacteria 72988
75 Ga0207639_10003092 3300026041 Bacteria 11191
76 Ga0207702_10004802 3300026078 Bacteria 11914
77 Ga0207702_10006428 3300026078 Bacteria 10139
78 Ga0207641_10000072 3300026088 Bacteria 151067
79 Ga0207648_10000782 3300026089 Bacteria 35850
80 Ga0207683_10141544 3300026121 Bacteria 2168
81 Ga0207428_10015812 3300027907 Bacteria 6513
82 Ga0268266_10000023 3300028379 Bacteria 501899
83 Ga0268266_10015785 3300028379 Bacteria 6467
84 Ga0268264_10005161 3300028381 Bacteria 11067
85 Ga0307415_100030390 3300032126 Bacteria 3467
86 Ga0395900_0016425 3300037418 Bacteria 7547
87 Ga0395898_0001505 3300037466 Bacteria 32177
88 Ga0395898_0048759 3300037466 Bacteria 4152
89 Ga0395905_0007849 3300037471 Bacteria 10572
90 Ga0395901_0006833 3300038443 Bacteria 11524
91 Ga0451853_0279075 3300041512 Bacteria 8232
92 Ga0466963_0000002 3300044694 Bacteria 108477
93 Ga0466963_0007524 3300044694 Bacteria 6498
94 Ga0466967_0000020 3300045976 Bacteria 78851
95 Ga0495603_0011195 3300046455 Bacteria 5436
96 Ga0495641_0000298 3300046461 Bacteria 39640
97 Ga0495582_0000048 3300046473 Bacteria 60887
98 Ga0495662_0000006 3300046476 Bacteria 79206
99 Ga0495594_0000021 3300046499 Bacteria 74679
100 Ga0495608_0000301 3300046511 Bacteria 34659
101 Ga0495618_0000003 3300046514 Bacteria 256269
102 Ga0495620_0000060 3300046515 Bacteria 95642
103 Ga0495628_0001728 3300046516 Bacteria 19872
104 Ga0495628_0004613 3300046516 Bacteria 12181
105 Ga0495630_0001515 3300046517 Bacteria 16079
106 Ga0495630_0090533 3300046517 Bacteria 2311
107 Ga0495640_0002588 3300046533 Bacteria 14533
108 Ga0495622_0000325 3300046557 Bacteria 35075
109 Ga0495667_0035905 3300046559 Bacteria 3311
110 Ga0495634_0000555 3300046642 Bacteria 36577
111 Ga0495634_0008709 3300046642 Bacteria 7527
112 Ga0495634_0030875 3300046642 Bacteria 3695
113 Ga0495625_0000154 3300046660 Bacteria 105083
114 Ga0495635_0000006 3300046663 Bacteria 301820
115 Ga0495657_0003667 3300046675 Bacteria 12460
116 Ga0495599_0009362 3300046678 Bacteria 5985
117 Ga0495658_0000031 3300046683 Bacteria 71165
118 Ga0495669_0000064 3300046684 Bacteria 70549
119 Ga0495613_0000003 3300046689 Bacteria 248826
120 Ga0495613_0000175 3300046689 Bacteria 62391
121 Ga0495624_0000002 3300046690 Bacteria 189957
122 Ga0495624_0000149 3300046690 Bacteria 51112
123 Ga0495624_0004969 3300046690 Bacteria 9635
124 Ga0495649_0005180 3300046694 Bacteria 8358
125 Ga0495600_0004940 3300046809 Bacteria 8009
126 Ga0495604_0001300 3300047317 Bacteria 20418
127 Ga0495604_0001970 3300047317 Bacteria 16586
128 Ga0495676_0000263 3300047321 Bacteria 42431
129 Ga0495676_0001589 3300047321 Bacteria 19708
130 Ga0495680_0000185 3300047322 Bacteria 66139
131 Ga0495684_0047123 3300047471 Bacteria 3298
132 Ga0495602_0000063 3300048088 Bacteria 104915
133 Ga0495602_0002467 3300048088 Bacteria 18845
134 Ga0496100_0000004 3300048903 Bacteria 321778
135 Ga0496100_0000027 3300048903 Bacteria 115829
136 Ga0496101_0000007 3300048904 Bacteria 321778
137 Ga0496101_0000012 3300048904 Bacteria 268127
138 Ga0496104_0000003 3300048907 Bacteria 669219
139 Ga0496104_0051864 3300048907 Bacteria 3873
140 Ga0496105_0000008 3300048908 Bacteria 335652
141 Ga0496106_0000004 3300048909 Bacteria 279896
142 Ga0496106_0000020 3300048909 Bacteria 169168
143 Ga0496106_0000096 3300048909 Bacteria 67122
144 Ga0496107_0000001 3300048910 Bacteria 321778
145 Ga0496107_0000014 3300048910 Bacteria 176738
146 Ga0496108_0000002 3300048911 Bacteria 700890
147 Ga0496109_0000001 3300048912 Bacteria 700852
148 Ga0496110_0003956 3300048913 Bacteria 11398
149 Ga0496112_0000002 3300048915 Bacteria 782039
150 Ga0496113_0090812 3300048916 Bacteria 2353
151 Ga0496114_0021163 3300048917 Bacteria 5289
152 Ga0501075_0001167 3300049591 Bacteria 17004
153 Ga0501081_0098939 3300049743 Bacteria 2060
154 nmdc:mga0yw44_72444_c1 3300050492 Bacteria 2141
155 nmdc:mga05p37_159322_c1 3300050507 Bacteria 2757
156 nmdc:mga05p37_3811_c3 3300050507 Bacteria 9182
157 nmdc:mga0qj67_110293_c1 3300050509 Bacteria 2221
158 nmdc:mga06r32_17661_c1 3300050510 Bacteria 6516
159 nmdc:mga06r32_55946_c1 3300050510 Bacteria 3785
160 nmdc:mga08y16_66383_c1 3300050511 Bacteria 3765
161 nmdc:mga0n895_38524_c1 3300050512 Bacteria 4632
162 nmdc:mga0a205_1_c2 3300050515 Bacteria 266330
163 Ga0495601_0000041 3300053077 Bacteria 79353
164 Ga0495601_0000246 3300053077 Bacteria 28887
165 Ga0495612_0000620 3300053078 Bacteria 14314
166 Ga0495595_0000084 3300053084 Bacteria 45392
167 Ga0495595_0080810 3300053084 Bacteria 1548
168 Ga0495619_0001141 3300053085 Bacteria 17453
169 Ga0495619_0001976 3300053085 Bacteria 13670
170 Ga0495619_0003595 3300053085 Bacteria 9991
171 Ga0500614_000483 3300053123 Bacteria 10349
172 Ga0070665_100000128
173 Ga0070683_100024447
174 Ga0070670_100172399
175 Ga0070677_10000019
176 Ga0070682_100000038
177 Ga0068868_100006035
178 Ga0070661_100000524
179 Ga0070675_100000008
180 Ga0070674_100000105
181 Ga0070659_100030953
182 Ga0070659_100048008
183 Ga0070713_100066396
184 Ga0070678_100108517
185 Ga0070662_100000015
186 Ga0068867_100000293
187 Ga0070684_100001385
188 Ga0070693_100003601
189 Ga0070664_100014586
190 Ga0068854_100015181
191 Ga0068856_100011985
192 Ga0068866_10000006
193 Ga0068863_100000039
194 Ga0068858_100000350
195 Ga0068860_100012539
196 Ga0081539_10012270
197 Ga0081539_10025849
198 Ga0070715_10000003
199 Ga0075430_100044576
200 Ga0075431_100004559
201 Ga0075433_10000307
202 Ga0075434_100040522
203 Ga0068865_100000009
204 Ga0111539_10001267
205 Ga0111539_10135954
206 Ga0105245_10000012
207 Ga0105245_10000067
208 Ga0105245_10000246
209 Ga0114129_10195169
210 Ga0105243_10197863
211 Ga0105238_10000014
212 Ga0105249_10000159
213 Ga0157374_10026400
214 Ga0157374_10116237
215 Ga0157375_10013174
216 Ga0157375_10066373
217 Ga0157380_10000594
218 Ga0157379_10013351
219 Ga0207682_10000090
220 Ga0207642_10000001
221 Ga0207642_10000003
222 Ga0207642_10000004
223 Ga0207685_10000003
224 Ga0207649_10000610
225 Ga0207652_10000119
226 Ga0207694_10000008
227 Ga0207650_10197526
228 Ga0207659_10000049
229 Ga0207687_10000011
230 Ga0207687_10000012
231 Ga0207687_10000325
232 Ga0207700_10074017
233 Ga0207664_10001798
234 Ga0207690_10030268
235 Ga0207706_10000062
236 Ga0207669_10000070
237 Ga0207704_10000009
238 Ga0207661_10009813
239 Ga0207679_10004220
240 Ga0207679_10014705
241 Ga0207667_10105595
242 Ga0207712_10000003
243 Ga0207712_10067649
244 Ga0207677_10000787
245 Ga0207703_10000185
246 Ga0207639_10003092
247 Ga0207702_10004802
248 Ga0207702_10006428
249 Ga0207641_10000072
250 Ga0207648_10000782
251 Ga0207683_10141544
252 Ga0207428_10015812
253 Ga0268266_10000023
254 Ga0268266_10015785
255 Ga0268264_10005161
256 Ga0307415_100030390
257 Ga0395900_0016425
258 Ga0395898_0001505
259 Ga0395898_0048759
260 Ga0395905_0007849
261 Ga0395901_0006833
262 Ga0451853_0279075
263 Ga0466963_0000002
264 Ga0466963_0007524
265 Ga0466967_0000020
266 Ga0495603_0011195
267 Ga0495641_0000298
268 Ga0495582_0000048
269 Ga0495662_0000006
270 Ga0495594_0000021
271 Ga0495608_0000301
272 Ga0495618_0000003
273 Ga0495620_0000060
274 Ga0495628_0001728
275 Ga0495628_0004613
276 Ga0495630_0001515
277 Ga0495630_0090533
278 Ga0495640_0002588
279 Ga0495622_0000325
280 Ga0495667_0035905
281 Ga0495634_0000555
282 Ga0495634_0008709
283 Ga0495634_0030875
284 Ga0495625_0000154
285 Ga0495635_0000006
286 Ga0495657_0003667
287 Ga0495599_0009362
288 Ga0495658_0000031
289 Ga0495669_0000064
290 Ga0495613_0000003
291 Ga0495613_0000175
292 Ga0495624_0000002
293 Ga0495624_0000149
294 Ga0495624_0004969
295 Ga0495649_0005180
296 Ga0495600_0004940
297 Ga0495604_0001300
298 Ga0495604_0001970
299 Ga0495676_0000263
300 Ga0495676_0001589
301 Ga0495680_0000185
302 Ga0495684_0047123
303 Ga0495602_0000063
304 Ga0495602_0002467
305 Ga0496100_0000004
306 Ga0496100_0000027
307 Ga0496101_0000007
308 Ga0496101_0000012
309 Ga0496104_0000003
310 Ga0496104_0051864
311 Ga0496105_0000008
312 Ga0496106_0000004
313 Ga0496106_0000020
314 Ga0496106_0000096
315 Ga0496107_0000001
316 Ga0496107_0000014
317 Ga0496108_0000002
318 Ga0496109_0000001
319 Ga0496110_0003956
320 Ga0496112_0000002
321 Ga0496113_0090812
322 Ga0496114_0021163
323 Ga0501075_0001167
324 Ga0501081_0098939
325 nmdc:mga0yw44_72444_c1
326 nmdc:mga05p37_159322_c1
327 nmdc:mga05p37_3811_c3
328 nmdc:mga0qj67_110293_c1
329 nmdc:mga06r32_17661_c1
330 nmdc:mga06r32_55946_c1
331 nmdc:mga08y16_66383_c1
332 nmdc:mga0n895_38524_c1
333 nmdc:mga0a205_1_c2
334 Ga0495601_0000041
335 Ga0495601_0000246
336 Ga0495612_0000620
337 Ga0495595_0000084
338 Ga0495595_0080810
339 Ga0495619_0001141
340 Ga0495619_0001976
341 Ga0495619_0003595
342 Ga0500614_000483

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02397

Bac_transf

Bacterial sugar transferase

314

502

0.95

PF13727

CoA_binding_3

CoA-binding domain

103

278

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
8e37-assembly4.cif.gz_D structure of campylobacter concisus wild-type semet pglc 0.7952 300 495
8e37-assembly4.cif.gz_D structure of campylobacter concisus wild-type semet pglc 0.7838 300 495
8g1n-assembly2.cif.gz_B structure of campylobacter concisus pglc i57m/q175m variant with modeled c-terminus 0.7827 307 496
8g1n-assembly1.cif.gz_A structure of campylobacter concisus pglc i57m/q175m variant with modeled c-terminus 0.7807 300 495
3nkl-assembly1.cif.gz_A crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio fischeri 0.7697 175 274
ID Description Score Start End Superfamily
af_Q2G1K5_1_137_1.10.287.1260 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.8426 48 169 1.10.287.1260
af_Q2G1K5_138_265_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8259 175 274 3.40.50.720
3nklA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8114 175 274 3.40.50.720
af_Q2G1K5_1_137_1.10.287.1260 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.7528 48 169 1.10.287.1260
1yqeA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;AF0625-like 0.7429 177 272 3.40.50.10700
ID Description Score Start End GO Terms
AF-A0A425VX49-F1-model_v4 deleted 0.8962 301 414
AF-A0A2N1QQS5-F1-model_v4 Glycosyl transferase 0.8956 303 428 GO:0016020
GO:0016780
AF-A0A3L7UAT2-F1-model_v4 Sugar transferase 0.869 302 429 GO:0016020
GO:0016780
AF-A0A7D6V6N5-F1-model_v4 Sugar transferase 0.8495 309 427 GO:0016780
AF-A0A564VUD9-F1-model_v4 UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase (EC 2.7.8.31) 0.8467 296 501 GO:0016020
GO:0089702

Map