F258997

General Info

Members Datasets Scaffolds Average Seq Length
171 124 342 411

Family's Representative Sequence

Representative Sequence 3300028666|Ga0265336_10001273|Ga0265336_100012734
Length 478
Sequence MTKPRTPRPTTPHKAAKNTAPASPSARIREKAQPARNPRVEGKAADAVRKAPAPSSQTPISSASGELAPGTKINRRAADRLRAGHVWVYASDIESVNVPAGEPPALLPVADSRGLLLGTALYSRNSQIALRLVSREALDEASWFQLLESRLRVAIKRRRPLLDEQNSACRLCFSEADELPGLVVDKYSDLVILQLLTKGLDSATVRKVCVRVLREELSPAVILERPDARMRELEGLSAPSSEPLFIANAAATAGNTQFKLNSLTFHFDANSGQKTGAFLDQRANYAAAAEWASRLGLANREGGGRALDVCCYQGGFALHLAEVCAQVTGIDASRASLEVAERNLQANRSRLTAQVEWVEGDAFQILRDWSETGEKFDAIVLDPPAFAKSLRAVEGALRGYKELNLRALKMMRPGGLLVTCSCSHHVGWAELEASVTSAATDAHRRVRVLERRGATLDHPVILNLPETEYLKCMVLEVD

Samples

Sample ID Description Type Environment
1 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
7 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
8 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
39 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
42 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
43 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
46 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
47 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
61 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
62 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
63 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
64 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
65 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
66 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
67 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
73 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
76 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
77 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
82 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
83 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
84 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
85 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
86 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
87 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
88 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
92 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
93 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
96 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
100 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
101 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
102 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
106 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
107 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
108 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
109 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
110 2738541283 Pedobacter sp. OK701 Isolate Unclassified
111 2738541284 Pedobacter sp. YR016 Isolate Unclassified
112 2738541302 Pedobacter sp. CF074 Isolate Unclassified
113 2738543023 Pedobacter sp. OK628 Isolate Unclassified
114 2739367651 Pedobacter sp. OK291 Isolate Unclassified
115 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
116 2818991437 Pedobacter terrae 518 Isolate Unclassified
117 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
118 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
119 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
120 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
121 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
122 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
123 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
124 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.64
Metatranscriptomes 0
Isolates 9.36

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.51
Nodule 0
Rhizoplane 1.17
Rhizosphere 85.96
Stem 0
Stem Tuber 0
Unclassified 5.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265336_10001273 3300028666 Bacteria 11892
2 SwRhRL2b_contig_2234511 2162886007 Bacteria 9507
3 Ga0055536_1000002 3300003781 Bacteria 605605
4 Ga0055530_10002352 3300003791 Bacteria 12304
5 Ga0065714_10002204 3300005288 Bacteria 57902
6 Ga0065714_10002231 3300005288 Bacteria 44866
7 Ga0065714_10002386 3300005288 Bacteria 21249
8 Ga0065714_10003833 3300005288 Bacteria 5996
9 Ga0065714_10005873 3300005288 Bacteria 5880
10 Ga0065714_10069038 3300005288 Bacteria 4419
11 Ga0065704_10070374 3300005289 Bacteria 28734
12 Ga0065704_10073302 3300005289 Bacteria 7332
13 Ga0065707_10083721 3300005295 Bacteria 8386
14 Ga0070676_10028978 3300005328 Bacteria 3146
15 Ga0070670_100052432 3300005331 Bacteria 3504
16 Ga0070666_10018478 3300005335 Unclassified 4484
17 Ga0068868_100064647 3300005338 Bacteria 2905
18 Ga0070661_100062087 3300005344 Bacteria 2743
19 Ga0070671_100187940 3300005355 Bacteria 1750
20 Ga0070662_100013211 3300005457 Bacteria 5489
21 Ga0070707_100075470 3300005468 Bacteria 3252
22 Ga0070698_100174649 3300005471 Unclassified 2088
23 Ga0070679_100070142 3300005530 Bacteria 3496
24 Ga0070684_100084433 3300005535 Bacteria 2815
25 Ga0070672_100025160 3300005543 Bacteria 4412
26 Ga0068856_100051550 3300005614 Bacteria 4057
27 Ga0068856_100142227 3300005614 Bacteria 2406
28 Ga0068858_100028893 3300005842 Bacteria 5148
29 Ga0068862_100185835 3300005844 Bacteria 1867
30 Ga0081455_10087953 3300005937 Bacteria 2526
31 Ga0068871_100017084 3300006358 Bacteria 5482
32 Ga0075428_100172222 3300006844 Bacteria 2346
33 Ga0075431_100082700 3300006847 Bacteria 3315
34 Ga0105245_10043663 3300009098 Bacteria 3999
35 Ga0114129_10006869 3300009147 Bacteria 16184
36 Ga0105237_10000429 3300009545 Bacteria 59643
37 Ga0105237_10064627 3300009545 Bacteria 3655
38 Ga0105239_10066244 3300010375 Bacteria 3967
39 Ga0157373_10000936 3300013100 Bacteria 22553
40 Ga0157373_10010688 3300013100 Bacteria 6751
41 Ga0157373_10178038 3300013100 Unclassified 1497
42 Ga0157371_10000025 3300013102 Bacteria 279746
43 Ga0157371_10000904 3300013102 Bacteria 33397
44 Ga0157371_10006606 3300013102 Bacteria 9526
45 Ga0157371_10007352 3300013102 Bacteria 8929
46 Ga0157370_10008063 3300013104 Bacteria 11405
47 Ga0157370_10018082 3300013104 Bacteria 7095
48 Ga0157370_10070331 3300013104 Bacteria 3303
49 Ga0157370_10204336 3300013104 Bacteria 1832
50 Ga0157369_10000038 3300013105 Bacteria 189078
51 Ga0157369_10000738 3300013105 Bacteria 42144
52 Ga0157369_10099754 3300013105 Bacteria 3095
53 Ga0157374_10112669 3300013296 Bacteria 2618
54 Ga0163162_10000050 3300013306 Bacteria 120151
55 Ga0163162_10003111 3300013306 Bacteria 15848
56 Ga0157372_10279079 3300013307 Bacteria 1942
57 Ga0157375_10110784 3300013308 Bacteria 2843
58 Ga0157375_10206969 3300013308 Unclassified 2118
59 Ga0182008_10000025 3300014497 Bacteria 191222
60 Ga0182008_10000052 3300014497 Bacteria 103193
61 Ga0182008_10000058 3300014497 Bacteria 100175
62 Ga0157379_10098230 3300014968 Bacteria 2629
63 Ga0182006_1000127 3300015261 Bacteria 81679
64 Ga0182006_1001592 3300015261 Bacteria 13422
65 Ga0182006_1027550 3300015261 Bacteria 2318
66 Ga0182007_10000024 3300015262 Bacteria 181761
67 Ga0183373_1002 3300015682 Bacteria 990153
68 Ga0163161_10000628 3300017792 Bacteria 28142
69 Ga0163161_10000653 3300017792 Bacteria 27687
70 Ga0163161_10000979 3300017792 Bacteria 21853
71 Ga0213874_10001474 3300021377 Bacteria 4886
72 Ga0209026_1004012 3300025250 Bacteria 4568
73 Ga0209676_1000022 3300025292 Bacteria 605659
74 Ga0209050_1000020 3300025298 Bacteria 605671
75 Ga0207671_10001163 3300025914 Bacteria 31375
76 Ga0207652_10168543 3300025921 Bacteria 1964
77 Ga0207706_10002130 3300025933 Bacteria 19379
78 Ga0207691_10089775 3300025940 Bacteria 2755
79 Ga0207689_10026826 3300025942 Bacteria 4823
80 Ga0207667_10399592 3300025949 Bacteria 1399
81 Ga0207651_10039757 3300025960 Bacteria 3105
82 Ga0207703_10041461 3300026035 Bacteria 3688
83 Ga0207641_10180706 3300026088 Bacteria 1932
84 Ga0207683_10003102 3300026121 Bacteria 14522
85 Ga0209971_1006104 3300027682 Bacteria 2852
86 Ga0265337_1000390 3300028556 Bacteria 23596
87 Ga0265319_1038981 3300028563 Bacteria 1613
88 Ga0265318_10000043 3300028577 Bacteria 128908
89 Ga0265330_10000007 3300031235 Bacteria 208811
90 Ga0265330_10005485 3300031235 Bacteria 6329
91 Ga0265330_10011603 3300031235 Bacteria 4130
92 Ga0265332_10000296 3300031238 Bacteria 38979
93 Ga0265332_10027554 3300031238 Unclassified 2489
94 Ga0265332_10050403 3300031238 Bacteria 1789
95 Ga0265320_10000041 3300031240 Bacteria 129936
96 Ga0265320_10000642 3300031240 Bacteria 26746
97 Ga0265320_10042940 3300031240 Bacteria 2239
98 Ga0265329_10005264 3300031242 Bacteria 5251
99 Ga0265340_10037762 3300031247 Bacteria 2392
100 Ga0265340_10048392 3300031247 Bacteria 2067
101 Ga0265331_10000031 3300031250 Bacteria 213762
102 Ga0265316_10002665 3300031344 Bacteria 18379
103 Ga0265316_10009817 3300031344 Bacteria 8785
104 Ga0265316_10030490 3300031344 Bacteria 4419
105 Ga0265316_10140453 3300031344 Bacteria 1815
106 Ga0265316_10246619 3300031344 Archaea 1312
107 Ga0265313_10001850 3300031595 Bacteria 19293
108 Ga0265313_10003418 3300031595 Bacteria 12862
109 Ga0265313_10010245 3300031595 Bacteria 5962
110 Ga0265314_10000021 3300031711 Bacteria 298390
111 Ga0265314_10017575 3300031711 Bacteria 5609
112 Ga0265342_10001016 3300031712 Bacteria 27619
113 Ga0265342_10007114 3300031712 Bacteria 8239
114 Ga0265342_10034385 3300031712 Bacteria 3110
115 Ga0316578_10016038 3300031728 Bacteria 4046
116 Ga0307405_10000011 3300031731 Bacteria 241071
117 Ga0316577_10003938 3300031733 Bacteria 7584
118 Ga0307412_10000001 3300031911 Bacteria 822691
119 Ga0307416_100000081 3300032002 Bacteria 65986
120 Ga0307414_10000502 3300032004 Bacteria 20406
121 Ga0307414_10011516 3300032004 Bacteria 5191
122 Ga0307414_10013195 3300032004 Bacteria 4912
123 Ga0373933_0002253 3300035724 Bacteria 11001
124 Ga0373937_0005113 3300036401 Bacteria 11177
125 Ga0316584_0000800 3300036712 Bacteria 17706
126 Ga0316584_0020688 3300036712 Bacteria 4774
127 Ga0373925_0014882 3300037068 Bacteria 5622
128 Ga0395900_0000204 3300037418 Bacteria 92834
129 Ga0436363_0785851 3300039450 Bacteria 10452
130 Ga0436363_1536646 3300039450 Bacteria 5052
131 Ga0436362_0205911 3300039453 Bacteria 8708
132 Ga0466972_0005535 3300044658 Bacteria 6327
133 Ga0466966_0166022 3300044684 Unclassified 1343
134 Ga0466968_0019241 3300044735 Unclassified 2748
135 Ga0466959_0054079 3300045049 Unclassified 2934
136 Ga0451576_0001168 3300045051 Bacteria 47211
137 Ga0495629_0044656 3300046459 Unclassified 3110
138 Ga0495610_0000037 3300046512 Bacteria 186354
139 Ga0495610_0000049 3300046512 Bacteria 149009
140 Ga0495652_0108420 3300046529 Bacteria 2238
141 Ga0495645_0042055 3300046543 Unclassified 3331
142 Ga0495633_0021792 3300046558 Bacteria 3199
143 Ga0495681_0073571 3300047470 Bacteria 1543
144 Ga0496114_0003744 3300048917 Bacteria 11713
145 Ga0496115_0002378 3300048918 Bacteria 13491
146 Ga0496122_0000668 3300048925 Bacteria 69054
147 Ga0496123_0008187 3300048926 Bacteria 9641
148 Ga0496126_0072401 3300048929 Bacteria 3066
149 Ga0501040_0000498 3300049576 Bacteria 23447
150 Ga0501079_0090442 3300049741 Bacteria 2371
151 nmdc:mga05p37_13212_c1 3300050507 Bacteria 9885
152 nmdc:mga0qj67_91372_c1 3300050509 Bacteria 2446
153 nmdc:mga06r32_363833_c1 3300050510 Bacteria 1430
154 Ga0500651_0001833 3300053093 Bacteria 10908
155 Ga0500641_0011819 3300053096 Bacteria 3175
156 2586208900 2585427687 Bacteria 5544917
157 2738755857 2738541283 Bacteria 7222293
158 2738761477 2738541284 Bacteria 5199923
159 2738852528 2738541302 Bacteria 5944758
160 2739303011 2738543023 Bacteria 6767879
161 2739591360 2739367651 Bacteria 6359826
162 2776615890 2775506987 Bacteria 5373360
163 2819549618 2818991437 Bacteria 5805520
164 2842727417 2842722452 Bacteria 6263924
165 2842913813 2842909656 Bacteria 6185908
166 2849283502 2849281842 Bacteria 6065644
167 2852628093 2852627209 Bacteria 5896285
168 2904447217 2904445276 Bacteria 5310396
169 2919188455 2919186247 Bacteria 6244071
170 2939667460 2939664404 Bacteria 6364494
171 2954020730 2954016120 Bacteria 6446024
172 Ga0265336_10001273
173 SwRhRL2b_contig_2234511
174 Ga0055536_1000002
175 Ga0055530_10002352
176 Ga0065714_10002204
177 Ga0065714_10002231
178 Ga0065714_10002386
179 Ga0065714_10003833
180 Ga0065714_10005873
181 Ga0065714_10069038
182 Ga0065704_10070374
183 Ga0065704_10073302
184 Ga0065707_10083721
185 Ga0070676_10028978
186 Ga0070670_100052432
187 Ga0070666_10018478
188 Ga0068868_100064647
189 Ga0070661_100062087
190 Ga0070671_100187940
191 Ga0070662_100013211
192 Ga0070707_100075470
193 Ga0070698_100174649
194 Ga0070679_100070142
195 Ga0070684_100084433
196 Ga0070672_100025160
197 Ga0068856_100051550
198 Ga0068856_100142227
199 Ga0068858_100028893
200 Ga0068862_100185835
201 Ga0081455_10087953
202 Ga0068871_100017084
203 Ga0075428_100172222
204 Ga0075431_100082700
205 Ga0105245_10043663
206 Ga0114129_10006869
207 Ga0105237_10000429
208 Ga0105237_10064627
209 Ga0105239_10066244
210 Ga0157373_10000936
211 Ga0157373_10010688
212 Ga0157373_10178038
213 Ga0157371_10000025
214 Ga0157371_10000904
215 Ga0157371_10006606
216 Ga0157371_10007352
217 Ga0157370_10008063
218 Ga0157370_10018082
219 Ga0157370_10070331
220 Ga0157370_10204336
221 Ga0157369_10000038
222 Ga0157369_10000738
223 Ga0157369_10099754
224 Ga0157374_10112669
225 Ga0163162_10000050
226 Ga0163162_10003111
227 Ga0157372_10279079
228 Ga0157375_10110784
229 Ga0157375_10206969
230 Ga0182008_10000025
231 Ga0182008_10000052
232 Ga0182008_10000058
233 Ga0157379_10098230
234 Ga0182006_1000127
235 Ga0182006_1001592
236 Ga0182006_1027550
237 Ga0182007_10000024
238 Ga0183373_1002
239 Ga0163161_10000628
240 Ga0163161_10000653
241 Ga0163161_10000979
242 Ga0213874_10001474
243 Ga0209026_1004012
244 Ga0209676_1000022
245 Ga0209050_1000020
246 Ga0207671_10001163
247 Ga0207652_10168543
248 Ga0207706_10002130
249 Ga0207691_10089775
250 Ga0207689_10026826
251 Ga0207667_10399592
252 Ga0207651_10039757
253 Ga0207703_10041461
254 Ga0207641_10180706
255 Ga0207683_10003102
256 Ga0209971_1006104
257 Ga0265337_1000390
258 Ga0265319_1038981
259 Ga0265318_10000043
260 Ga0265330_10000007
261 Ga0265330_10005485
262 Ga0265330_10011603
263 Ga0265332_10000296
264 Ga0265332_10027554
265 Ga0265332_10050403
266 Ga0265320_10000041
267 Ga0265320_10000642
268 Ga0265320_10042940
269 Ga0265329_10005264
270 Ga0265340_10037762
271 Ga0265340_10048392
272 Ga0265331_10000031
273 Ga0265316_10002665
274 Ga0265316_10009817
275 Ga0265316_10030490
276 Ga0265316_10140453
277 Ga0265316_10246619
278 Ga0265313_10001850
279 Ga0265313_10003418
280 Ga0265313_10010245
281 Ga0265314_10000021
282 Ga0265314_10017575
283 Ga0265342_10001016
284 Ga0265342_10007114
285 Ga0265342_10034385
286 Ga0316578_10016038
287 Ga0307405_10000011
288 Ga0316577_10003938
289 Ga0307412_10000001
290 Ga0307416_100000081
291 Ga0307414_10000502
292 Ga0307414_10011516
293 Ga0307414_10013195
294 Ga0373933_0002253
295 Ga0373937_0005113
296 Ga0316584_0000800
297 Ga0316584_0020688
298 Ga0373925_0014882
299 Ga0395900_0000204
300 Ga0436363_0785851
301 Ga0436363_1536646
302 Ga0436362_0205911
303 Ga0466972_0005535
304 Ga0466966_0166022
305 Ga0466968_0019241
306 Ga0466959_0054079
307 Ga0451576_0001168
308 Ga0495629_0044656
309 Ga0495610_0000037
310 Ga0495610_0000049
311 Ga0495652_0108420
312 Ga0495645_0042055
313 Ga0495633_0021792
314 Ga0495681_0073571
315 Ga0496114_0003744
316 Ga0496115_0002378
317 Ga0496122_0000668
318 Ga0496123_0008187
319 Ga0496126_0072401
320 Ga0501040_0000498
321 Ga0501079_0090442
322 nmdc:mga05p37_13212_c1
323 nmdc:mga0qj67_91372_c1
324 nmdc:mga06r32_363833_c1
325 Ga0500651_0001833
326 Ga0500641_0011819
327 2586208900
328 2738755857
329 2738761477
330 2738852528
331 2739303011
332 2739591360
333 2776615890
334 2819549618
335 2842727417
336 2842913813
337 2849283502
338 2852628093
339 2904447217
340 2919188455
341 2939667460
342 2954020730

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17785

PUA_3

PUA-like domain

72

135

0.96

PF09445

Methyltransf_15

RNA cap guanine-N2 methyltransferase

303

390

0.94

PF13649

Methyltransf_25

Methyltransferase domain

306

401

0.89

PF08241

Methyltransf_11

Methyltransferase domain

307

419

0.87

PF10672

Methyltrans_SAM

S-adenosylmethionine-dependent methyltransferase

188

456

0.83

PF13847

Methyltransf_31

Methyltransferase domain

300

453

0.77

PF05175

MTS

Methyltransferase small domain

292

445

0.74

PF01189

Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

295

466

0.73

PF13489

Methyltransf_23

Methyltransferase domain

279

444

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
3c0k-assembly1.cif.gz_B crystal structure of a ribosomal rna methyltranferase 0.9754 1 394
3c0k-assembly1.cif.gz_B crystal structure of a ribosomal rna methyltranferase 0.973 1 394
4dmg-assembly1.cif.gz_B thermus thermophilus m5c1942 methyltransferase rlmo 0.9486 1 392
2cww-assembly1.cif.gz_A-2 crystal structure of thermus thermophilus ttha1280, a putative sam-dependent rna methyltransferase, in complex with s-adenosyl-l-homocysteine 0.9433 3 394
2as0-assembly1.cif.gz_B crystal structure of ph1915 (apc 5817): a hypothetical rna methyltransferase 0.9408 1 393
ID Description Score Start End Superfamily
af_I1KW47_231_444_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9829 181 394 3.40.50.150
3c0kB01 Mainly Beta;Roll;Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4;PUA domain 0.9798 1 71 2.30.130.10
af_I1KW47_231_444_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9783 181 394 3.40.50.150
af_A0A1D6H1M4_236_424_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9697 217 392 3.40.50.150
3c0kB03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.967 181 392 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A4Q3BIS6-F1-model_v4 deleted 0.9975 179 394
AF-A0A4V1SVM5-F1-model_v4 Class I SAM-dependent rRNA methyltransferase 0.9959 1 132 GO:0003723
GO:0005737
GO:0006364
GO:0008168
GO:0032259
AF-A0A1I6TDT6-F1-model_v4 23S rRNA (Cytosine1962-C5)-methyltransferase 0.9939 1 394 GO:0003723
GO:0005737
GO:0006364
GO:0008168
GO:0032259
AF-A0A381H5G4-F1-model_v4 deleted 0.9933 192 394
AF-A0A379VSW7-F1-model_v4 LSU m5C1962 methyl transferase RlmI (EC 2.1.1.191) 0.993 279 394 GO:0005737
GO:0008168
GO:0032259

Map