F260970

General Info

Members Datasets Scaffolds Average Seq Length
172 127 344 516

Family's Representative Sequence

Representative Sequence 3300030731|Ga0316177_1126724|Ga0316177_11267242
Length 541
Sequence MNIMKNKTRIFYKKALIASACILMAFSACDKGFEEMNTNPNAFTEPVLGNLFTTSIIRTAGTGTADRNRTNIKYFAGTMQYMASLGLNWSGDKNYENNQFGDLFETIYNVHLKELQQIIAATEGNVDLINQFATANIWRVFILHRATDIYGDVPYTEAGAGYITGTFKPKYDKQSTIYSMMLEQLETSIKQLDATKSTFGSNDVLYQGNIPKWKTFAYSLMLRLGMRLSNVSPDLAKNWVEKAIAGGVMQSNEDIAKVNHVAGNGNTQNWDSFELKRESFPESNAGKGPVKLSKTLIDALIERNDPRLPFYATLWEGNILSQQQAKLPTTTAPTIQQGLPNGFDATTIKQVIPNFSNNMLAALSEPNTGTVASLNAPTIILSYSEVEFLLAEAALRGWGPGTPSEHYNNAIRANMQSTSLFPVVTLSSGESIMKEELIESYLIAHALNSSASFEQQMEQIYTQFWLAHFMYFDNFEAFSTWRRTGYPILNAPNFPGNFTGGKHLLRLRYPVSEATLNKANYEEAVSNQGPDLYTTAVWWDK

Samples

Sample ID Description Type Environment
1 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
11 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
31 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
67 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
68 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
69 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
70 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
71 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
72 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
73 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
74 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
75 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
76 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
78 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
79 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
80 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
83 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
84 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
85 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
86 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
87 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
88 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
89 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
90 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
91 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
92 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
94 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
95 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
96 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
97 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
98 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
99 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
100 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
101 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
102 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
103 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
104 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
105 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
106 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
107 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
108 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
109 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
110 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
111 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
112 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
113 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
114 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
115 2739367656 Pedobacter sp. CF523 Isolate Unclassified
116 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
117 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
118 2818991437 Pedobacter terrae 518 Isolate Unclassified
119 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
120 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
121 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
122 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
123 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
124 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
125 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
126 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
127 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.88
Metatranscriptomes 0.58
Isolates 14.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.63
Nodule 0
Rhizoplane 0
Rhizosphere 70.93
Stem 0
Stem Tuber 0
Unclassified 8.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316177_1126724 3300030731 Bacteria 4037
2 rootH1_10037346 3300003316 Bacteria 9326
3 rootL2_10011654 3300003322 Bacteria 20378
4 rootL2_10082820 3300003322 Bacteria 4797
5 rootL2_10101907 3300003322 Unclassified 2289
6 rootH1_10109696 3300003323 Bacteria 4777
7 Ga0055536_1003944 3300003781 Bacteria 7780
8 Ga0055531_10000293 3300003794 Bacteria 49990
9 Ga0065165_1000088 3300005262 Bacteria 152328
10 Ga0065714_10003442 3300005288 Bacteria 8456
11 Ga0065714_10007686 3300005288 Bacteria 4108
12 Ga0065714_10064437 3300005288 Bacteria 115817
13 Ga0065714_10067035 3300005288 Bacteria 5972
14 Ga0070670_100071010 3300005331 Bacteria 2989
15 Ga0068869_100002899 3300005334 Bacteria 10426
16 Ga0070666_10000074 3300005335 Bacteria 72739
17 Ga0070668_100105758 3300005347 Unclassified 2235
18 Ga0070671_100050057 3300005355 Bacteria 3476
19 Ga0070671_100066331 3300005355 Bacteria 3008
20 Ga0070667_100003389 3300005367 Bacteria 13585
21 Ga0070678_100029572 3300005456 Bacteria 3754
22 Ga0070672_100107860 3300005543 Bacteria 2267
23 Ga0070665_100000009 3300005548 Bacteria 562640
24 Ga0070665_100000585 3300005548 Bacteria 50839
25 Ga0068859_100000064 3300005617 Bacteria 104971
26 Ga0068859_100146573 3300005617 Unclassified 2436
27 Ga0068864_100031912 3300005618 Bacteria 4472
28 Ga0068863_100009358 3300005841 Bacteria 9560
29 Ga0068858_100003239 3300005842 Bacteria 16236
30 Ga0068860_100000239 3300005843 Bacteria 84335
31 Ga0068860_100001657 3300005843 Bacteria 23829
32 Ga0068860_100022473 3300005843 Bacteria 6099
33 Ga0068862_100194147 3300005844 Unclassified 1828
34 Ga0097621_100004035 3300006237 Bacteria 10182
35 Ga0097621_100113565 3300006237 Bacteria 2291
36 Ga0068871_100046859 3300006358 Unclassified 3483
37 Ga0097620_100000064 3300006931 Bacteria 104971
38 Ga0097620_100146569 3300006931 Unclassified 2436
39 Ga0105244_10000046 3300009036 Bacteria 143184
40 Ga0105240_10011264 3300009093 Bacteria 12469
41 Ga0105245_10073907 3300009098 Bacteria 3101
42 Ga0105243_10022410 3300009148 Bacteria 4800
43 Ga0105241_10001108 3300009174 Bacteria 20503
44 Ga0105242_10002098 3300009176 Bacteria 15701
45 Ga0105242_10067745 3300009176 Unclassified 2952
46 Ga0105237_10000052 3300009545 Bacteria 160459
47 Ga0105237_10001789 3300009545 Bacteria 27801
48 Ga0105237_10001976 3300009545 Bacteria 26087
49 Ga0105237_10003077 3300009545 Bacteria 20107
50 Ga0105237_10073920 3300009545 Bacteria 3400
51 Ga0105249_10031954 3300009553 Bacteria 4761
52 Ga0105239_10010496 3300010375 Bacteria 10353
53 Ga0105239_10182854 3300010375 Bacteria 2345
54 Ga0157373_10022162 3300013100 Bacteria 4609
55 Ga0157370_10003196 3300013104 Bacteria 19379
56 Ga0157370_10060187 3300013104 Unclassified 3607
57 Ga0157369_10006651 3300013105 Bacteria 13357
58 Ga0157374_10084649 3300013296 Bacteria 3014
59 Ga0157378_10005301 3300013297 Bacteria 11328
60 Ga0157378_10074975 3300013297 Unclassified 3045
61 Ga0157378_10176069 3300013297 Bacteria 2009
62 Ga0157375_10034517 3300013308 Bacteria 4821
63 Ga0182008_10001165 3300014497 Bacteria 18130
64 Ga0182006_1000323 3300015261 Bacteria 41598
65 Ga0163161_10000019 3300017792 Bacteria 216758
66 Ga0163161_10029810 3300017792 Unclassified 3878
67 Ga0209676_1001270 3300025292 Bacteria 26213
68 Ga0209257_1000025 3300025304 Bacteria 724838
69 Ga0207655_1000034 3300025728 Bacteria 364737
70 Ga0207680_10000034 3300025903 Bacteria 74519
71 Ga0207654_10022443 3300025911 Bacteria 3368
72 Ga0207695_10024671 3300025913 Bacteria 6754
73 Ga0207671_10000818 3300025914 Bacteria 39395
74 Ga0207671_10004773 3300025914 Bacteria 12778
75 Ga0207671_10014992 3300025914 Bacteria 6092
76 Ga0207671_10040328 3300025914 Bacteria 3456
77 Ga0207650_10019164 3300025925 Bacteria 4807
78 Ga0207686_10020677 3300025934 Bacteria 3764
79 Ga0207686_10031333 3300025934 Unclassified 3156
80 Ga0207704_10078410 3300025938 Unclassified 2125
81 Ga0207691_10048330 3300025940 Bacteria 3901
82 Ga0207689_10003788 3300025942 Bacteria 13780
83 Ga0207689_10021386 3300025942 Bacteria 5439
84 Ga0207712_10023055 3300025961 Bacteria 4104
85 Ga0207677_10016378 3300026023 Bacteria 4389
86 Ga0207703_10009000 3300026035 Bacteria 7864
87 Ga0207641_10000212 3300026088 Bacteria 75285
88 Ga0207676_10005351 3300026095 Bacteria 9091
89 Ga0207676_10063050 3300026095 Bacteria 2943
90 Ga0207683_10195159 3300026121 Bacteria 1839
91 Ga0268266_10000014 3300028379 Bacteria 644033
92 Ga0268266_10000060 3300028379 Bacteria 269063
93 Ga0268264_10000290 3300028381 Bacteria 84435
94 Ga0268264_10002841 3300028381 Bacteria 15108
95 Ga0268264_10036245 3300028381 Bacteria 4062
96 Ga0307515_10000078 3300028794 Bacteria 227988
97 Ga0307515_10000412 3300028794 Bacteria 103361
98 Ga0307515_10003343 3300028794 Bacteria 33898
99 Ga0307511_10005051 3300030521 Bacteria 13456
100 Ga0316176_1181925 3300030732 Bacteria 6869
101 Ga0316183_1154697 3300030742 Bacteria 4645
102 Ga0316181_1038708 3300030744 Bacteria 10810
103 Ga0307509_10119903 3300031507 Unclassified 2611
104 Ga0307516_10145990 3300031730 Bacteria 2131
105 Ga0307413_10001519 3300031824 Bacteria 8893
106 Ga0307414_10028989 3300032004 Bacteria 3597
107 Ga0307411_10000009 3300032005 Bacteria 319906
108 Ga0307510_10034765 3300033180 Bacteria 5635
109 Ga0316596_1001255 3300033541 Bacteria 5021
110 Ga0439447_000193 3300041407 Bacteria 21766
111 Ga0439431_0007942 3300041997 Bacteria 2375
112 Ga0466971_0036246 3300044719 Bacteria 2212
113 Ga0495638_0000008 3300046460 Bacteria 565643
114 Ga0495638_0011794 3300046460 Bacteria 6017
115 Ga0495610_0001323 3300046512 Bacteria 21995
116 Ga0495648_0007717 3300046524 Bacteria 8572
117 Ga0495633_0000005 3300046558 Bacteria 357644
118 Ga0495611_0000084 3300046648 Bacteria 66870
119 Ga0495611_0000338 3300046648 Bacteria 30531
120 Ga0495672_0053176 3300047320 Unclassified 2375
121 Ga0495687_000379 3300047443 Bacteria 55445
122 Ga0495686_0000298 3300047472 Bacteria 85528
123 Ga0496116_0000075 3300048919 Bacteria 231674
124 Ga0496124_0025133 3300048927 Bacteria 5400
125 Ga0496125_0000070 3300048928 Bacteria 245793
126 Ga0496126_0005216 3300048929 Bacteria 14994
127 Ga0496126_0046163 3300048929 Bacteria 3998
128 Ga0501043_0044790 3300049579 Bacteria 3479
129 Ga0501249_001828 3300049679 Bacteria 4335
130 Ga0501241_000112 3300049758 Bacteria 17674
131 Ga0501266_000013 3300049763 Bacteria 183849
132 Ga0500644_0008058 3300053088 Bacteria 2769
133 Ga0500644_0027479 3300053088 Bacteria 1771
134 Ga0500646_0001488 3300053090 Bacteria 6161
135 Ga0500583_0002631 3300053092 Bacteria 5452
136 Ga0500651_0002603 3300053093 Bacteria 9591
137 Ga0500641_0000012 3300053096 Bacteria 164908
138 Ga0500658_0000005 3300053134 Bacteria 369268
139 Ga0500568_0003664 3300053139 Bacteria 8447
140 Ga0500604_0001780 3300053151 Bacteria 6021
141 Ga0500616_0000003 3300053153 Bacteria 1220687
142 Ga0500622_0000024 3300053156 Bacteria 249623
143 Ga0500622_0000042 3300053156 Bacteria 161253
144 Ga0500622_0000711 3300053156 Bacteria 29208
145 Ga0500622_0008520 3300053156 Bacteria 5728
146 Ga0500584_001081 3300053726 Bacteria 8990
147 Ga0466962_0007615 3300061719 Bacteria 5193
148 2522551682 2522125168 Bacteria 7376607
149 2644012755 2643221600 Bacteria 5530138
150 2644370448 2643221667 Bacteria 5627472
151 2644641776 2643221716 Bacteria 4986332
152 2738735538 2738541279 Bacteria 6149495
153 2738768115 2738541285 Bacteria 6150075
154 2739217120 2738543007 Bacteria 6149845
155 2739617699 2739367656 Bacteria 5152243
156 2740003713 2739367857 Bacteria 5433684
157 2740008530 2739367858 Bacteria 5432813
158 2819548962 2818991437 Bacteria 5805520
159 2842908418 2842903701 Bacteria 6986368
160 2857622381 2857618242 Bacteria 5635925
161 2904445324 2904445276 Bacteria 5310396
162 2910247455 2910245624 Bacteria 6935613
163 2910250469 2910245624 Bacteria 6935613
164 2911140026 2911138879 Bacteria 5811561
165 2919194711 2919191525 Bacteria 5765973
166 2929150921 2929150217 Bacteria 5462483
167 8054307941 8054307821 Bacteria 5212224
168 8055590558 8055588893 Bacteria 3619545
169 8055591310 8055588893 Bacteria 3619545
170 8055591854 8055588893 Bacteria 3619545
171 8055591858 8055588893 Bacteria 3619545
172 8055592146 8055588893 Bacteria 3619545
173 Ga0316177_1126724
174 rootH1_10037346
175 rootL2_10011654
176 rootL2_10082820
177 rootL2_10101907
178 rootH1_10109696
179 Ga0055536_1003944
180 Ga0055531_10000293
181 Ga0065165_1000088
182 Ga0065714_10003442
183 Ga0065714_10007686
184 Ga0065714_10064437
185 Ga0065714_10067035
186 Ga0070670_100071010
187 Ga0068869_100002899
188 Ga0070666_10000074
189 Ga0070668_100105758
190 Ga0070671_100050057
191 Ga0070671_100066331
192 Ga0070667_100003389
193 Ga0070678_100029572
194 Ga0070672_100107860
195 Ga0070665_100000009
196 Ga0070665_100000585
197 Ga0068859_100000064
198 Ga0068859_100146573
199 Ga0068864_100031912
200 Ga0068863_100009358
201 Ga0068858_100003239
202 Ga0068860_100000239
203 Ga0068860_100001657
204 Ga0068860_100022473
205 Ga0068862_100194147
206 Ga0097621_100004035
207 Ga0097621_100113565
208 Ga0068871_100046859
209 Ga0097620_100000064
210 Ga0097620_100146569
211 Ga0105244_10000046
212 Ga0105240_10011264
213 Ga0105245_10073907
214 Ga0105243_10022410
215 Ga0105241_10001108
216 Ga0105242_10002098
217 Ga0105242_10067745
218 Ga0105237_10000052
219 Ga0105237_10001789
220 Ga0105237_10001976
221 Ga0105237_10003077
222 Ga0105237_10073920
223 Ga0105249_10031954
224 Ga0105239_10010496
225 Ga0105239_10182854
226 Ga0157373_10022162
227 Ga0157370_10003196
228 Ga0157370_10060187
229 Ga0157369_10006651
230 Ga0157374_10084649
231 Ga0157378_10005301
232 Ga0157378_10074975
233 Ga0157378_10176069
234 Ga0157375_10034517
235 Ga0182008_10001165
236 Ga0182006_1000323
237 Ga0163161_10000019
238 Ga0163161_10029810
239 Ga0209676_1001270
240 Ga0209257_1000025
241 Ga0207655_1000034
242 Ga0207680_10000034
243 Ga0207654_10022443
244 Ga0207695_10024671
245 Ga0207671_10000818
246 Ga0207671_10004773
247 Ga0207671_10014992
248 Ga0207671_10040328
249 Ga0207650_10019164
250 Ga0207686_10020677
251 Ga0207686_10031333
252 Ga0207704_10078410
253 Ga0207691_10048330
254 Ga0207689_10003788
255 Ga0207689_10021386
256 Ga0207712_10023055
257 Ga0207677_10016378
258 Ga0207703_10009000
259 Ga0207641_10000212
260 Ga0207676_10005351
261 Ga0207676_10063050
262 Ga0207683_10195159
263 Ga0268266_10000014
264 Ga0268266_10000060
265 Ga0268264_10000290
266 Ga0268264_10002841
267 Ga0268264_10036245
268 Ga0307515_10000078
269 Ga0307515_10000412
270 Ga0307515_10003343
271 Ga0307511_10005051
272 Ga0316176_1181925
273 Ga0316183_1154697
274 Ga0316181_1038708
275 Ga0307509_10119903
276 Ga0307516_10145990
277 Ga0307413_10001519
278 Ga0307414_10028989
279 Ga0307411_10000009
280 Ga0307510_10034765
281 Ga0316596_1001255
282 Ga0439447_000193
283 Ga0439431_0007942
284 Ga0466971_0036246
285 Ga0495638_0000008
286 Ga0495638_0011794
287 Ga0495610_0001323
288 Ga0495648_0007717
289 Ga0495633_0000005
290 Ga0495611_0000084
291 Ga0495611_0000338
292 Ga0495672_0053176
293 Ga0495687_000379
294 Ga0495686_0000298
295 Ga0496116_0000075
296 Ga0496124_0025133
297 Ga0496125_0000070
298 Ga0496126_0005216
299 Ga0496126_0046163
300 Ga0501043_0044790
301 Ga0501249_001828
302 Ga0501241_000112
303 Ga0501266_000013
304 Ga0500644_0008058
305 Ga0500644_0027479
306 Ga0500646_0001488
307 Ga0500583_0002631
308 Ga0500651_0002603
309 Ga0500641_0000012
310 Ga0500658_0000005
311 Ga0500568_0003664
312 Ga0500604_0001780
313 Ga0500616_0000003
314 Ga0500622_0000024
315 Ga0500622_0000042
316 Ga0500622_0000711
317 Ga0500622_0008520
318 Ga0500584_001081
319 Ga0466962_0007615
320 2522551682
321 2644012755
322 2644370448
323 2644641776
324 2738735538
325 2738768115
326 2739217120
327 2739617699
328 2740003713
329 2740008530
330 2819548962
331 2842908418
332 2857622381
333 2904445324
334 2910247455
335 2910250469
336 2911140026
337 2919194711
338 2929150921
339 8054307941
340 8055590558
341 8055591310
342 8055591854
343 8055591858
344 8055592146

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12771

SusD-like_2

Starch-binding associating with outer membrane

40

510

0.87

PF12741

SusD-like

Susd and RagB outer membrane lipoprotein

67

540

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5j5u-assembly4.cif.gz_D fjoh_4561 chitin-binding protein 0.9074 40 510
5j5u-assembly1.cif.gz_A fjoh_4561 chitin-binding protein 0.907 40 510
5j5u-assembly3.cif.gz_C fjoh_4561 chitin-binding protein 0.9065 40 510
5j5u-assembly4.cif.gz_D fjoh_4561 chitin-binding protein 0.9054 40 510
5j5u-assembly1.cif.gz_A fjoh_4561 chitin-binding protein 0.9051 40 510
ID Description Score Start End Superfamily
3mx3B03 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);SusD-like, tetratrico peptide repeats domain 0.8814 362 456 1.20.120.840
4q69A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8214 33 509 1.25.40.390
4q69A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8197 33 509 1.25.40.390
5j90A00 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.8062 45 509 1.25.40.390
3ejnA03 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);SusD-like, tetratrico peptide repeats domain 0.7905 362 455 1.20.120.840
ID Description Score Start End GO Terms
AF-A0A3C0GFI4-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9588 362 510
AF-A0A519TG32-F1-model_v4 deleted 0.9507 97 255
AF-A0A258KHF4-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9505 24 461
AF-A0A258LAX9-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9467 116 496
AF-A0A7L7LH20-F1-model_v4 SusD/RagB family nutrient-binding outer membrane lipoprotein 0.9449 21 510

Map