F263194

General Info

Members Datasets Scaffolds Average Seq Length
173 52 346 489

Family's Representative Sequence

Representative Sequence 3300046472|Ga0495580_0045134|Ga0495580_0045134_338_1903
Length 521
Sequence MTDQDKEGMRETWQEGAARANAEYVRRRITIDPITRLEGHGKIDIFLDSNGQVERAYFQVPELRGFEKFVQGRPAEEMPQITSRICGVCPTAHHMAATKALDALYRVEPPIAAKKIRELIYSTFMTEDHALHFYFLGGPDFVMGPEAPTAERNVLGVIGKVGVETGKKVIAMRRRLRELIALAGGKAVHPVLGLPGGVAKHFTAEMQKQFREVAAEAVEFAQFTLQLFENVVLKNSEYVDLILADIYTHRTYYMGMVDEDNRVNFYDGSIRVANPEGREWKKFRAEQYLENIAEHVEPWSYVKFCYLKPIGWKGFTEGVESGIYSVAPLARLNVSVGMATPLAQGAYEKFFSALGGKPVHHTLANHWARLVELLYAAERMKELAADPAITDSNIRVLPTQKPREGIGVVEAPRGTLIHHYQTDENGIIEKANLIVATQNNAARIAMSVEKAAKGLISSADVSEGVLNKVEMAFRAYDPCHGCATHSLPGSMPLLLSVRERQGDVIASLRRDLDGSVHRDSH

Samples

Sample ID Description Type Environment
1 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
2 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
7 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
8 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
9 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
10 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
11 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
12 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
13 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
14 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
15 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
16 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
17 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
18 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
19 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
20 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
21 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
22 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
23 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
24 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
25 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
26 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
27 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
28 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
29 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
30 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
31 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
32 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
33 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
34 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
35 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
36 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
37 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
38 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
39 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
40 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
41 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
42 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
43 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
44 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
45 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
46 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
47 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
48 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
49 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
50 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
51 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
52 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.86
Metatranscriptomes 12.14
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 95.38
Stem 0
Stem Tuber 0
Unclassified 7.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495580_0045134 3300046472 Unclassified 3131
2 SwRhRL3b_contig_4032564 2162886006 Bacteria 3004
3 Ga0065704_10000385 3300005289 Bacteria 41151
4 Ga0065707_10000437 3300005295 Bacteria 81012
5 Ga0065707_10105980 3300005295 Unclassified 2616
6 Ga0070683_100000137 3300005329 Bacteria 47423
7 Ga0114129_10008767 3300009147 Bacteria 14423
8 Ga0207661_10000105 3300025944 Bacteria 53174
9 Ga0207674_10241821 3300026116 Bacteria 1752
10 Ga0265323_10003786 3300028653 Bacteria 6595
11 Ga0265322_10019662 3300028654 Bacteria 1937
12 Ga0265336_10014171 3300028666 Bacteria 2645
13 Ga0265330_10000027 3300031235 Bacteria 139025
14 Ga0265330_10006204 3300031235 Bacteria 5916
15 Ga0265332_10000056 3300031238 Bacteria 103368
16 Ga0265328_10023088 3300031239 Bacteria 2361
17 Ga0265320_10020049 3300031240 Bacteria 3636
18 Ga0265325_10002315 3300031241 Bacteria 12922
19 Ga0265329_10001280 3300031242 Bacteria 12259
20 Ga0265329_10002518 3300031242 Bacteria 8275
21 Ga0265331_10034823 3300031250 Bacteria 2481
22 Ga0265327_10006073 3300031251 Bacteria 9798
23 Ga0265316_10000127 3300031344 Bacteria 83083
24 Ga0265316_10001557 3300031344 Bacteria 24573
25 Ga0265316_10008461 3300031344 Bacteria 9543
26 Ga0265316_10053052 3300031344 Unclassified 3178
27 Ga0265313_10004087 3300031595 Bacteria 11370
28 Ga0316575_10005938 3300031665 Bacteria 4371
29 Ga0316575_10011325 3300031665 Unclassified 3298
30 Ga0316575_10031776 3300031665 Unclassified 2067
31 Ga0316579_10002810 3300031691 Bacteria 6657
32 Ga0316579_10008120 3300031691 Bacteria 4364
33 Ga0316579_10024700 3300031691 Bacteria 2707
34 Ga0316579_10031580 3300031691 Bacteria 2425
35 Ga0316579_10031894 3300031691 Bacteria 2415
36 Ga0316579_10059466 3300031691 Bacteria 1796
37 Ga0265314_10000004 3300031711 Bacteria 939480
38 Ga0265314_10026485 3300031711 Bacteria 4355
39 Ga0265342_10000030 3300031712 Bacteria 152928
40 Ga0265342_10024996 3300031712 Bacteria 3762
41 Ga0316576_10000179 3300031727 Bacteria 26247
42 Ga0316576_10000303 3300031727 Bacteria 21791
43 Ga0316576_10002981 3300031727 Bacteria 9816
44 Ga0316576_10008062 3300031727 Bacteria 6683
45 Ga0316576_10030876 3300031727 Unclassified 3798
46 Ga0316578_10000664 3300031728 Bacteria 12230
47 Ga0316578_10002941 3300031728 Bacteria 7651
48 Ga0316578_10003239 3300031728 Bacteria 7390
49 Ga0316578_10003342 3300031728 Bacteria 7311
50 Ga0316578_10009238 3300031728 Bacteria 5061
51 Ga0316578_10018817 3300031728 Bacteria 3793
52 Ga0316578_10044157 3300031728 Bacteria 2591
53 Ga0316578_10115706 3300031728 Bacteria 1611
54 Ga0316577_10000306 3300031733 Bacteria 17912
55 Ga0316577_10000497 3300031733 Bacteria 15594
56 Ga0316577_10001240 3300031733 Bacteria 11878
57 Ga0316577_10004960 3300031733 Bacteria 6942
58 Ga0316577_10009806 3300031733 Bacteria 5161
59 Ga0316577_10014789 3300031733 Bacteria 4289
60 Ga0316577_10022662 3300031733 Bacteria 3487
61 Ga0316577_10023198 3300031733 Bacteria 3445
62 Ga0316577_10029589 3300031733 Bacteria 3056
63 Ga0316577_10041645 3300031733 Bacteria 2570
64 Ga0316583_10000134 3300032133 Bacteria 17327
65 Ga0316583_10018375 3300032133 Bacteria 2510
66 Ga0316585_10000007 3300032137 Bacteria 31913
67 Ga0316585_10002366 3300032137 Bacteria 5077
68 Ga0316593_10000492 3300032168 Bacteria 7329
69 Ga0316593_10000708 3300032168 Bacteria 6522
70 Ga0316593_10001563 3300032168 Bacteria 5097
71 Ga0316593_10002686 3300032168 Bacteria 4278
72 Ga0316592_1000104 3300033524 Bacteria 8625
73 Ga0316592_1000141 3300033524 Bacteria 7961
74 Ga0316586_1000074 3300033527 Bacteria 7262
75 Ga0316586_1000428 3300033527 Bacteria 4053
76 Ga0316586_1002479 3300033527 Unclassified 2305
77 Ga0316586_1002702 3300033527 Unclassified 2244
78 Ga0316586_1005324 3300033527 Bacteria 1802
79 Ga0316588_1000081 3300033528 Bacteria 8504
80 Ga0316588_1000109 3300033528 Bacteria 8001
81 Ga0316588_1001001 3300033528 Bacteria 4401
82 Ga0316588_1003304 3300033528 Bacteria 2923
83 Ga0316588_1015283 3300033528 Bacteria 1689
84 Ga0316587_1000434 3300033529 Bacteria 4148
85 Ga0316596_1000088 3300033541 Bacteria 11233
86 Ga0316596_1000930 3300033541 Bacteria 5564
87 Ga0316596_1002735 3300033541 Bacteria 3794
88 Ga0316596_1002755 3300033541 Bacteria 3787
89 Ga0316574_0000498 3300035398 Bacteria 15919
90 Ga0316574_0000797 3300035398 Bacteria 13671
91 Ga0316574_0004280 3300035398 Bacteria 7456
92 Ga0316574_0014976 3300035398 Bacteria 4492
93 Ga0316574_0049832 3300035398 Unclassified 2604
94 Ga0316582_0001001 3300036647 Bacteria 11785
95 Ga0316582_0002607 3300036647 Bacteria 8543
96 Ga0316582_0004750 3300036647 Bacteria 6918
97 Ga0316582_0043487 3300036647 Bacteria 2818
98 Ga0316582_0067125 3300036647 Bacteria 2313
99 Ga0316582_0097401 3300036647 Bacteria 1944
100 Ga0316582_0143047 3300036647 Bacteria 1613
101 Ga0316584_0000136 3300036712 Bacteria 32486
102 Ga0316584_0001637 3300036712 Bacteria 13667
103 Ga0316584_0006269 3300036712 Bacteria 8056
104 Ga0316584_0007722 3300036712 Bacteria 7381
105 Ga0316584_0018873 3300036712 Bacteria 4980
106 Ga0316584_0020295 3300036712 Bacteria 4815
107 Ga0316584_0028181 3300036712 Bacteria 4139
108 Ga0316584_0044232 3300036712 Bacteria 3321
109 Ga0316584_0048776 3300036712 Unclassified 3164
110 Ga0316584_0080131 3300036712 Bacteria 2446
111 Ga0373925_0054526 3300037068 Bacteria 2991
112 Ga0316581_0003181 3300037588 Bacteria 4056
113 Ga0316581_0011834 3300037588 Bacteria 2447
114 Ga0400484_18268 3300038725 Bacteria 1720
115 Ga0400490_15907 3300038726 Bacteria 14047
116 Ga0400490_52744 3300038726 Bacteria 8062
117 Ga0400483_058405 3300039062 Bacteria 48689
118 Ga0400483_221003 3300039062 Bacteria 2133
119 Ga0400489_01545 3300039093 Bacteria 2695
120 Ga0400489_42041 3300039093 Bacteria 2635
121 Ga0400489_71731 3300039093 Bacteria 13620
122 Ga0451577_0000127 3300042876 Bacteria 168002
123 Ga0451577_0000245 3300042876 Bacteria 106824
124 Ga0451577_0000644 3300042876 Bacteria 55517
125 Ga0451577_0000677 3300042876 Bacteria 53715
126 Ga0451577_0003845 3300042876 Bacteria 16307
127 Ga0451577_0006547 3300042876 Bacteria 11588
128 Ga0451577_0011866 3300042876 Bacteria 8217
129 Ga0451577_0012051 3300042876 Bacteria 8135
130 Ga0451577_0013022 3300042876 Bacteria 7801
131 Ga0451577_0013108 3300042876 Bacteria 7771
132 Ga0451577_0093452 3300042876 Bacteria 2686
133 Ga0451577_0112422 3300042876 Bacteria 2437
134 Ga0451577_0169779 3300042876 Bacteria 1965
135 Ga0453683_0006138 3300044673 Bacteria 8274
136 Ga0453684_0000003 3300044712 Bacteria 1481694
137 Ga0453684_0000163 3300044712 Bacteria 296196
138 Ga0453684_0000640 3300044712 Bacteria 126342
139 Ga0453684_0000807 3300044712 Bacteria 106824
140 Ga0453684_0001127 3300044712 Bacteria 83728
141 Ga0453684_0001550 3300044712 Bacteria 64217
142 Ga0453684_0002633 3300044712 Bacteria 42891
143 Ga0453684_0003052 3300044712 Bacteria 38873
144 Ga0453684_0003091 3300044712 Bacteria 38407
145 Ga0453684_0007761 3300044712 Bacteria 19573
146 Ga0453684_0012606 3300044712 Bacteria 13905
147 Ga0453684_0013594 3300044712 Bacteria 13197
148 Ga0453684_0015211 3300044712 Bacteria 12206
149 Ga0453684_0019366 3300044712 Bacteria 10364
150 Ga0453684_0023930 3300044712 Bacteria 8957
151 Ga0453684_0028060 3300044712 Bacteria 8048
152 Ga0453684_0039857 3300044712 Bacteria 6391
153 Ga0453684_0042211 3300044712 Bacteria 6152
154 Ga0453684_0044637 3300044712 Bacteria 5925
155 Ga0453684_0061652 3300044712 Bacteria 4812
156 Ga0453684_0081082 3300044712 Unclassified 4048
157 Ga0453684_0097373 3300044712 Bacteria 3611
158 Ga0453684_0107546 3300044712 Bacteria 3396
159 Ga0453684_0190149 3300044712 Bacteria 2402
160 Ga0453684_0250500 3300044712 Bacteria 2034
161 Ga0453684_0332463 3300044712 Bacteria 1718
162 Ga0453684_0371505 3300044712 Bacteria 1607
163 Ga0451576_0000046 3300045051 Bacteria 334064
164 Ga0451576_0002220 3300045051 Bacteria 29864
165 Ga0451576_0018536 3300045051 Bacteria 7626
166 Ga0451576_0020476 3300045051 Bacteria 7202
167 Ga0451576_0059030 3300045051 Bacteria 4006
168 Ga0451576_0083357 3300045051 Unclassified 3326
169 Ga0451576_0119467 3300045051 Bacteria 2744
170 Ga0495580_0006688 3300046472 Bacteria 9359
171 Ga0501039_0023661 3300049575 Bacteria 4715
172 nmdc:mga05p37_9614_c1 3300050507 Bacteria 11452
173 nmdc:mga09592_55436_c1 3300050508 Unclassified 3350
174 Ga0495580_0045134
175 SwRhRL3b_contig_4032564
176 Ga0065704_10000385
177 Ga0065707_10000437
178 Ga0065707_10105980
179 Ga0070683_100000137
180 Ga0114129_10008767
181 Ga0207661_10000105
182 Ga0207674_10241821
183 Ga0265323_10003786
184 Ga0265322_10019662
185 Ga0265336_10014171
186 Ga0265330_10000027
187 Ga0265330_10006204
188 Ga0265332_10000056
189 Ga0265328_10023088
190 Ga0265320_10020049
191 Ga0265325_10002315
192 Ga0265329_10001280
193 Ga0265329_10002518
194 Ga0265331_10034823
195 Ga0265327_10006073
196 Ga0265316_10000127
197 Ga0265316_10001557
198 Ga0265316_10008461
199 Ga0265316_10053052
200 Ga0265313_10004087
201 Ga0316575_10005938
202 Ga0316575_10011325
203 Ga0316575_10031776
204 Ga0316579_10002810
205 Ga0316579_10008120
206 Ga0316579_10024700
207 Ga0316579_10031580
208 Ga0316579_10031894
209 Ga0316579_10059466
210 Ga0265314_10000004
211 Ga0265314_10026485
212 Ga0265342_10000030
213 Ga0265342_10024996
214 Ga0316576_10000179
215 Ga0316576_10000303
216 Ga0316576_10002981
217 Ga0316576_10008062
218 Ga0316576_10030876
219 Ga0316578_10000664
220 Ga0316578_10002941
221 Ga0316578_10003239
222 Ga0316578_10003342
223 Ga0316578_10009238
224 Ga0316578_10018817
225 Ga0316578_10044157
226 Ga0316578_10115706
227 Ga0316577_10000306
228 Ga0316577_10000497
229 Ga0316577_10001240
230 Ga0316577_10004960
231 Ga0316577_10009806
232 Ga0316577_10014789
233 Ga0316577_10022662
234 Ga0316577_10023198
235 Ga0316577_10029589
236 Ga0316577_10041645
237 Ga0316583_10000134
238 Ga0316583_10018375
239 Ga0316585_10000007
240 Ga0316585_10002366
241 Ga0316593_10000492
242 Ga0316593_10000708
243 Ga0316593_10001563
244 Ga0316593_10002686
245 Ga0316592_1000104
246 Ga0316592_1000141
247 Ga0316586_1000074
248 Ga0316586_1000428
249 Ga0316586_1002479
250 Ga0316586_1002702
251 Ga0316586_1005324
252 Ga0316588_1000081
253 Ga0316588_1000109
254 Ga0316588_1001001
255 Ga0316588_1003304
256 Ga0316588_1015283
257 Ga0316587_1000434
258 Ga0316596_1000088
259 Ga0316596_1000930
260 Ga0316596_1002735
261 Ga0316596_1002755
262 Ga0316574_0000498
263 Ga0316574_0000797
264 Ga0316574_0004280
265 Ga0316574_0014976
266 Ga0316574_0049832
267 Ga0316582_0001001
268 Ga0316582_0002607
269 Ga0316582_0004750
270 Ga0316582_0043487
271 Ga0316582_0067125
272 Ga0316582_0097401
273 Ga0316582_0143047
274 Ga0316584_0000136
275 Ga0316584_0001637
276 Ga0316584_0006269
277 Ga0316584_0007722
278 Ga0316584_0018873
279 Ga0316584_0020295
280 Ga0316584_0028181
281 Ga0316584_0044232
282 Ga0316584_0048776
283 Ga0316584_0080131
284 Ga0373925_0054526
285 Ga0316581_0003181
286 Ga0316581_0011834
287 Ga0400484_18268
288 Ga0400490_15907
289 Ga0400490_52744
290 Ga0400483_058405
291 Ga0400483_221003
292 Ga0400489_01545
293 Ga0400489_42041
294 Ga0400489_71731
295 Ga0451577_0000127
296 Ga0451577_0000245
297 Ga0451577_0000644
298 Ga0451577_0000677
299 Ga0451577_0003845
300 Ga0451577_0006547
301 Ga0451577_0011866
302 Ga0451577_0012051
303 Ga0451577_0013022
304 Ga0451577_0013108
305 Ga0451577_0093452
306 Ga0451577_0112422
307 Ga0451577_0169779
308 Ga0453683_0006138
309 Ga0453684_0000003
310 Ga0453684_0000163
311 Ga0453684_0000640
312 Ga0453684_0000807
313 Ga0453684_0001127
314 Ga0453684_0001550
315 Ga0453684_0002633
316 Ga0453684_0003052
317 Ga0453684_0003091
318 Ga0453684_0007761
319 Ga0453684_0012606
320 Ga0453684_0013594
321 Ga0453684_0015211
322 Ga0453684_0019366
323 Ga0453684_0023930
324 Ga0453684_0028060
325 Ga0453684_0039857
326 Ga0453684_0042211
327 Ga0453684_0044637
328 Ga0453684_0061652
329 Ga0453684_0081082
330 Ga0453684_0097373
331 Ga0453684_0107546
332 Ga0453684_0190149
333 Ga0453684_0250500
334 Ga0453684_0332463
335 Ga0453684_0371505
336 Ga0451576_0000046
337 Ga0451576_0002220
338 Ga0451576_0018536
339 Ga0451576_0020476
340 Ga0451576_0059030
341 Ga0451576_0083357
342 Ga0451576_0119467
343 Ga0495580_0006688
344 Ga0501039_0023661
345 nmdc:mga05p37_9614_c1
346 nmdc:mga09592_55436_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00374

NiFeSe_Hases

Nickel-dependent hydrogenase

64

154

0.95

PF00374

NiFeSe_Hases

Nickel-dependent hydrogenase

166

485

0.61

Structural Annotation

Top 5 Hits

ID Description Score Start End
7t2r-assembly1.cif.gz_D structure of electron bifurcating ni-fe hydrogenase complex hydabcsl in fmn-free apo state 0.9668 3 461
7t2r-assembly1.cif.gz_D structure of electron bifurcating ni-fe hydrogenase complex hydabcsl in fmn-free apo state 0.9626 3 461
5odr-assembly1.cif.gz_L heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with heterodisulfide for 2 minutes. 0.9613 3 461
5odr-assembly1.cif.gz_L heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with heterodisulfide for 2 minutes. 0.9592 3 461
5xfa-assembly2.cif.gz_H crystal structure of nad+-reducing [nife]-hydrogenase in the h2-reduced state 0.9492 2 461
ID Description Score Start End Superfamily
af_Q58592_2_416_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.9681 3 430 1.10.645.10
af_Q58592_2_416_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.9636 3 430 1.10.645.10
af_Q60338_6_397_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.8297 1 461 1.10.645.10
af_Q9NEW7_1_162_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8278 380 410 2.130.10.10
af_Q60338_6_397_1.10.645.10 Mainly Alpha;Orthogonal Bundle;Cytochrome-c3 Hydrogenase; chain B;Cytochrome-c3 Hydrogenase, chain B 0.8277 1 461 1.10.645.10
ID Description Score Start End GO Terms
AF-X1EW12-F1-model_v4 Uncharacterized protein 0.9952 195 431 GO:0016151
AF-A0A660V1G8-F1-model_v4 Ni/Fe hydrogenase subunit alpha 0.9937 71 439 GO:0016151
AF-X1J5X1-F1-model_v4 Uncharacterized protein 0.9926 231 313
AF-X1V0S7-F1-model_v4 CN hydrolase domain-containing protein 0.9912 81 346
AF-A0A0F9GQS2-F1-model_v4 Uncharacterized protein 0.9905 126 431 GO:0016151

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