F263267

General Info

Members Datasets Scaffolds Average Seq Length
173 124 346 742

Family's Representative Sequence

Representative Sequence 3300046694|Ga0495649_0000868|Ga0495649_0000868_18092_20431
Length 779
Sequence MTDTDLDSLAGGPPRDRATSILFAVAIFTSAALVFVVQPMVTKLVLPMLGGSPSVWNTSMVFFQTALLAGYAYAHALQRLKAVRSQLAIHLALLVLAGLFLPLKINGLLGEPNPSAPIGWLLATLTLSVGAPFAVLSATAPLLQAWYARVRAGHADGQNPYVLYAASNLGSFLALLAYPVVIEPLMSLSGQRASWSGGYATFMLLVVALAFVVWRRRLDDTAAASEPIPAEFGALPVSPPIAWREKAVLVLLAAGPSSLMLGVTAHLSTDVASAPFLWVIPLALYLLTFVIAFQNRPVIPLQITLMIAAAVGVVCIAFTASRSGNWAMMFGLHLTAFFFLSLMCHQRLAARRPAPDRLTEFYLLMSLGGVVGGAFTALLAPVIFRTVLEYPLVLVLVGLARPNSRAPIRKWEVYAFVAAVLICLAPIVLKGAFDANWDLAWVWSRNVSPSIEQTTQLILMFAMIAAFLIRDRMPAYVIICALIAIVTLSIGRGYDWALTERSFFGVMRVADRTDDRLGGSVHVLMHGTTLHGAQPRNPAFACKPTLYYAPSTPIGQVTEAVQRRAWGVRIGVVGQGSGAMAAYKRAEDRLTFFEIDPMVDRLSRDPKWFSFINGCAKQDGPGGPIDTVLGDARLSLVKQPAGTYDLLLIDAFSSDSVPTHLLTGEAIAGYLRLLKPTGVVILHLSNRNLDITGPAEAAARALKAPHLHQLYMEDANAPDMAEASTEVLILSPTQQGLEEFVGDRRWEELPDPKVRPWTDDYVNLFGSLWRHFRARWSQS

Samples

Sample ID Description Type Environment
1 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
27 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
42 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
66 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
67 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
68 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
69 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
72 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
77 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
78 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
79 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
80 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
81 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
82 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
83 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
84 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
85 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
86 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
87 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
88 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
89 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
92 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
93 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
97 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
98 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
99 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
100 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
101 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
102 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
103 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
104 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
105 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
106 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
107 2643221574 Brevundimonas sp. Root608 Isolate Unclassified
108 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
109 2643221614 Phenylobacterium sp. Root77 Isolate Unclassified
110 2643221661 Phenylobacterium sp. Root1277 Isolate Unclassified
111 2643221663 Brevundimonas sp. Root1279 Isolate Unclassified
112 2643221666 Phenylobacterium sp. Root1290 Isolate Unclassified
113 2643221699 Brevundimonas sp. Root1423 Isolate Unclassified
114 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
115 2879110137 Bradyrhizobium algeriense RST91 Isolate Nodule
116 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
117 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
118 2906610324
119 2928972540 Brevundimonas sp. 1080 Isolate Rhizosphere
120 2941485952 Brevundimonas faecalis 2814 Isolate Rhizosphere
121 2977240413 Brevundimonas vesicularis SORGH_AS 431 Isolate Unclassified
122 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
123 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
124 8056673599 Bradyrhizobium hereditatis WSM 1738 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 89.53
Metatranscriptomes 0
Isolates 10.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.08
Nodule 2.89
Rhizoplane 2.31
Rhizosphere 62.43
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495649_0000868 3300046694 Bacteria 24311
2 JGI25153J46596_10008694 3300003215 Bacteria 4821
3 Ga0055536_1002552 3300003781 Bacteria 10177
4 Ga0055530_10000740 3300003791 Bacteria 27171
5 Ga0055531_10003907 3300003794 Bacteria 9303
6 Ga0065165_1000277 3300005262 Bacteria 87540
7 Ga0070680_100034306 3300005336 Bacteria 4091
8 Ga0070660_100020469 3300005339 Bacteria 4862
9 Ga0070691_10000580 3300005341 Bacteria 14004
10 Ga0070668_100017216 3300005347 Bacteria 5409
11 Ga0070671_100052094 3300005355 Bacteria 3404
12 Ga0070659_100000206 3300005366 Bacteria 45867
13 Ga0070659_100004222 3300005366 Bacteria 10260
14 Ga0070681_10015949 3300005458 Bacteria 7492
15 Ga0070681_10016924 3300005458 Bacteria 7284
16 Ga0070685_10011091 3300005466 Bacteria 4706
17 Ga0070679_100016811 3300005530 Bacteria 7070
18 Ga0068853_100012010 3300005539 Bacteria 7044
19 Ga0070665_100000116 3300005548 Bacteria 150141
20 Ga0070665_100024650 3300005548 Bacteria 6062
21 Ga0068855_100021204 3300005563 Bacteria 7790
22 Ga0068855_100121350 3300005563 Bacteria 2991
23 Ga0068859_100080767 3300005617 Bacteria 3293
24 Ga0068864_100001151 3300005618 Bacteria 22080
25 Ga0068864_100011680 3300005618 Bacteria 7250
26 Ga0068863_100000023 3300005841 Bacteria 186490
27 Ga0068863_100037560 3300005841 Bacteria 4611
28 Ga0068858_100000322 3300005842 Bacteria 50648
29 Ga0068860_100000145 3300005843 Bacteria 115830
30 Ga0068860_100005851 3300005843 Bacteria 12380
31 Ga0081540_1029803 3300005983 Bacteria 3034
32 Ga0075364_10048595 3300006051 Bacteria 2764
33 Ga0068865_100004207 3300006881 Bacteria 8672
34 Ga0075436_100053971 3300006914 Bacteria 2774
35 Ga0097620_100080766 3300006931 Bacteria 3293
36 Ga0105250_10003201 3300009092 Bacteria 7825
37 Ga0105240_10015964 3300009093 Bacteria 10180
38 Ga0105240_10028781 3300009093 Bacteria 7248
39 Ga0105240_10066959 3300009093 Bacteria 4453
40 Ga0111539_10099610 3300009094 Bacteria 3413
41 Ga0105247_10035852 3300009101 Bacteria 3024
42 Ga0114129_10053430 3300009147 Bacteria 5665
43 Ga0105248_10000154 3300009177 Bacteria 80081
44 Ga0105248_10078590 3300009177 Bacteria 3708
45 Ga0105238_10006917 3300009551 Bacteria 11331
46 Ga0105238_10020704 3300009551 Bacteria 6699
47 Ga0105238_10051859 3300009551 Bacteria 4125
48 Ga0157371_10027547 3300013102 Bacteria 4121
49 Ga0157369_10017071 3300013105 Bacteria 8156
50 Ga0157378_10006637 3300013297 Bacteria 10110
51 Ga0157372_10052277 3300013307 Bacteria 4548
52 Ga0157379_10014105 3300014968 Bacteria 7005
53 Ga0157379_10021207 3300014968 Bacteria 5749
54 Ga0209026_1002404 3300025250 Bacteria 7057
55 Ga0209676_1000061 3300025292 Bacteria 332674
56 Ga0209676_1003579 3300025292 Bacteria 9385
57 Ga0209758_1005484 3300025297 Bacteria 9733
58 Ga0209758_1014685 3300025297 Bacteria 4141
59 Ga0209050_1000200 3300025298 Bacteria 134115
60 Ga0209257_1000190 3300025304 Bacteria 153686
61 Ga0209257_1000225 3300025304 Bacteria 134023
62 Ga0209257_1000439 3300025304 Bacteria 79332
63 Ga0209257_1001135 3300025304 Bacteria 34110
64 Ga0207705_10002109 3300025909 Bacteria 15460
65 Ga0207695_10001670 3300025913 Bacteria 35733
66 Ga0207695_10001727 3300025913 Bacteria 34901
67 Ga0207695_10042002 3300025913 Bacteria 4889
68 Ga0207695_10070200 3300025913 Bacteria 3582
69 Ga0207660_10006636 3300025917 Bacteria 7504
70 Ga0207657_10007960 3300025919 Bacteria 10808
71 Ga0207694_10017956 3300025924 Bacteria 5347
72 Ga0207690_10000129 3300025932 Bacteria 62350
73 Ga0207704_10006329 3300025938 Bacteria 5514
74 Ga0207711_10000887 3300025941 Bacteria 28843
75 Ga0207689_10060515 3300025942 Bacteria 3114
76 Ga0207667_10012057 3300025949 Bacteria 9997
77 Ga0207667_10019640 3300025949 Bacteria 7536
78 Ga0207668_10014503 3300025972 Bacteria 4879
79 Ga0207703_10000532 3300026035 Bacteria 39270
80 Ga0207641_10000286 3300026088 Bacteria 63418
81 Ga0207641_10065210 3300026088 Bacteria 3115
82 Ga0207676_10000188 3300026095 Bacteria 54316
83 Ga0207676_10041827 3300026095 Bacteria 3521
84 Ga0268266_10000064 3300028379 Bacteria 249533
85 Ga0268265_10001646 3300028380 Bacteria 18291
86 Ga0268265_10004331 3300028380 Bacteria 9884
87 Ga0268265_10084699 3300028380 Bacteria 2513
88 Ga0268264_10000046 3300028381 Bacteria 364597
89 Ga0268264_10008753 3300028381 Bacteria 8402
90 Ga0307517_10000497 3300028786 Bacteria 67390
91 Ga0265338_10009737 3300028800 Bacteria 11403
92 Ga0265338_10030613 3300028800 Bacteria 5296
93 Ga0265338_10052793 3300028800 Bacteria 3643
94 Ga0265330_10016248 3300031235 Bacteria 3436
95 Ga0265340_10002893 3300031247 Bacteria 9774
96 Ga0307513_10000181 3300031456 Bacteria 91264
97 Ga0307513_10011115 3300031456 Bacteria 11221
98 Ga0307513_10090173 3300031456 Bacteria 3128
99 Ga0307516_10000004 3300031730 Bacteria 367451
100 Ga0307510_10046596 3300033180 Bacteria 4658
101 Ga0307510_10085523 3300033180 Bacteria 3030
102 Ga0373927_0011711 3300035695 Bacteria 5838
103 Ga0373937_0004034 3300036401 Bacteria 12437
104 Ga0373925_0000478 3300037068 Bacteria 39975
105 Ga0395898_0024729 3300037466 Bacteria 6055
106 Ga0395898_0095111 3300037466 Bacteria 2863
107 Ga0395905_0000074 3300037471 Bacteria 167312
108 Ga0395901_0067045 3300038443 Bacteria 3738
109 Ga0395901_0086234 3300038443 Bacteria 3283
110 Ga0451807_0707143 3300041486 Bacteria 3028
111 Ga0495603_0018433 3300046455 Bacteria 4223
112 Ga0495629_0014173 3300046459 Bacteria 5741
113 Ga0495632_0029632 3300046519 Bacteria 2847
114 Ga0495643_0014481 3300046522 Bacteria 4692
115 Ga0495597_0001923 3300046542 Bacteria 14047
116 Ga0495597_0021725 3300046542 Bacteria 2983
117 Ga0495633_0001309 3300046558 Bacteria 19641
118 Ga0495669_0000006 3300046684 Bacteria 190838
119 Ga0495613_0006331 3300046689 Bacteria 8855
120 Ga0495677_0013819 3300047445 Bacteria 2939
121 Ga0495673_0004316 3300047469 Bacteria 8951
122 Ga0495686_0000013 3300047472 Bacteria 489656
123 Ga0495593_0021224 3300047673 Bacteria 3630
124 Ga0496110_0013173 3300048913 Bacteria 6828
125 Ga0496115_0000598 3300048918 Bacteria 27622
126 Ga0496115_0005513 3300048918 Bacteria 9211
127 Ga0496121_0038185 3300048924 Bacteria 4257
128 Ga0496122_0007346 3300048925 Bacteria 12289
129 Ga0496123_0000539 3300048926 Bacteria 65166
130 Ga0501047_0009623 3300049581 Bacteria 9138
131 Ga0501047_0071099 3300049581 Bacteria 3350
132 Ga0501047_0112705 3300049581 Bacteria 2602
133 Ga0501035_0010621 3300049822 Bacteria 8527
134 nmdc:mga05p37_117291_c1 3300050507 Bacteria 3271
135 nmdc:mga05p37_121107_c1 3300050507 Bacteria 3214
136 nmdc:mga08y16_44768_c1 3300050511 Bacteria 4638
137 Ga0500643_000376 3300053087 Bacteria 34859
138 Ga0500643_000745 3300053087 Bacteria 21249
139 Ga0500643_017547 3300053087 Bacteria 2395
140 Ga0500566_0016103 3300053094 Bacteria 4392
141 Ga0500641_0000264 3300053096 Bacteria 19552
142 Ga0500641_0001246 3300053096 Bacteria 9048
143 Ga0500562_000288 3300053108 Bacteria 12326
144 Ga0500562_000578 3300053108 Bacteria 8796
145 Ga0500562_003345 3300053108 Bacteria 4014
146 Ga0500595_005875 3300053119 Bacteria 5287
147 Ga0500595_012318 3300053119 Bacteria 3313
148 Ga0500608_004676 3300053122 Bacteria 5331
149 Ga0500559_0000040 3300053136 Bacteria 106740
150 Ga0500559_0014659 3300053136 Bacteria 3312
151 Ga0500616_0013298 3300053153 Bacteria 4786
152 Ga0500645_000419 3300053730 Bacteria 29374
153 Ga0500645_000833 3300053730 Bacteria 18318
154 Ga0500645_001784 3300053730 Bacteria 10369
155 2643883550 2643221574 Bacteria 2789653
156 2644000221 2643221598 Bacteria 4578346
157 2644085017 2643221614 Bacteria 4260023
158 2644342569 2643221661 Bacteria 4267604
159 2644352035 2643221663 Bacteria 3425771
160 2644365869 2643221666 Bacteria 4265935
161 2644551914 2643221699 Bacteria 5731501
162 2644553050 2643221699 Bacteria 5731501
163 2793073284 2791355197 Bacteria 8420563
164 2879110181 2879110137 Bacteria 8907982
165 2885384944 2885383462 Bacteria 9473874
166 2889039682 2889033259 Bacteria 9099371
167 2906613315
168 2928974824 2928972540 Bacteria 3058286
169 2941487521 2941485952 Bacteria 3591484
170 2977242132 2977240413 Bacteria 3191065
171 3005475448 3005474847 Bacteria 9259049
172 8006967164 8006964411 Bacteria 8966052
173 8056673698 8056673599 Bacteria 7871253
174 Ga0495649_0000868
175 JGI25153J46596_10008694
176 Ga0055536_1002552
177 Ga0055530_10000740
178 Ga0055531_10003907
179 Ga0065165_1000277
180 Ga0070680_100034306
181 Ga0070660_100020469
182 Ga0070691_10000580
183 Ga0070668_100017216
184 Ga0070671_100052094
185 Ga0070659_100000206
186 Ga0070659_100004222
187 Ga0070681_10015949
188 Ga0070681_10016924
189 Ga0070685_10011091
190 Ga0070679_100016811
191 Ga0068853_100012010
192 Ga0070665_100000116
193 Ga0070665_100024650
194 Ga0068855_100021204
195 Ga0068855_100121350
196 Ga0068859_100080767
197 Ga0068864_100001151
198 Ga0068864_100011680
199 Ga0068863_100000023
200 Ga0068863_100037560
201 Ga0068858_100000322
202 Ga0068860_100000145
203 Ga0068860_100005851
204 Ga0081540_1029803
205 Ga0075364_10048595
206 Ga0068865_100004207
207 Ga0075436_100053971
208 Ga0097620_100080766
209 Ga0105250_10003201
210 Ga0105240_10015964
211 Ga0105240_10028781
212 Ga0105240_10066959
213 Ga0111539_10099610
214 Ga0105247_10035852
215 Ga0114129_10053430
216 Ga0105248_10000154
217 Ga0105248_10078590
218 Ga0105238_10006917
219 Ga0105238_10020704
220 Ga0105238_10051859
221 Ga0157371_10027547
222 Ga0157369_10017071
223 Ga0157378_10006637
224 Ga0157372_10052277
225 Ga0157379_10014105
226 Ga0157379_10021207
227 Ga0209026_1002404
228 Ga0209676_1000061
229 Ga0209676_1003579
230 Ga0209758_1005484
231 Ga0209758_1014685
232 Ga0209050_1000200
233 Ga0209257_1000190
234 Ga0209257_1000225
235 Ga0209257_1000439
236 Ga0209257_1001135
237 Ga0207705_10002109
238 Ga0207695_10001670
239 Ga0207695_10001727
240 Ga0207695_10042002
241 Ga0207695_10070200
242 Ga0207660_10006636
243 Ga0207657_10007960
244 Ga0207694_10017956
245 Ga0207690_10000129
246 Ga0207704_10006329
247 Ga0207711_10000887
248 Ga0207689_10060515
249 Ga0207667_10012057
250 Ga0207667_10019640
251 Ga0207668_10014503
252 Ga0207703_10000532
253 Ga0207641_10000286
254 Ga0207641_10065210
255 Ga0207676_10000188
256 Ga0207676_10041827
257 Ga0268266_10000064
258 Ga0268265_10001646
259 Ga0268265_10004331
260 Ga0268265_10084699
261 Ga0268264_10000046
262 Ga0268264_10008753
263 Ga0307517_10000497
264 Ga0265338_10009737
265 Ga0265338_10030613
266 Ga0265338_10052793
267 Ga0265330_10016248
268 Ga0265340_10002893
269 Ga0307513_10000181
270 Ga0307513_10011115
271 Ga0307513_10090173
272 Ga0307516_10000004
273 Ga0307510_10046596
274 Ga0307510_10085523
275 Ga0373927_0011711
276 Ga0373937_0004034
277 Ga0373925_0000478
278 Ga0395898_0024729
279 Ga0395898_0095111
280 Ga0395905_0000074
281 Ga0395901_0067045
282 Ga0395901_0086234
283 Ga0451807_0707143
284 Ga0495603_0018433
285 Ga0495629_0014173
286 Ga0495632_0029632
287 Ga0495643_0014481
288 Ga0495597_0001923
289 Ga0495597_0021725
290 Ga0495633_0001309
291 Ga0495669_0000006
292 Ga0495613_0006331
293 Ga0495677_0013819
294 Ga0495673_0004316
295 Ga0495686_0000013
296 Ga0495593_0021224
297 Ga0496110_0013173
298 Ga0496115_0000598
299 Ga0496115_0005513
300 Ga0496121_0038185
301 Ga0496122_0007346
302 Ga0496123_0000539
303 Ga0501047_0009623
304 Ga0501047_0071099
305 Ga0501047_0112705
306 Ga0501035_0010621
307 nmdc:mga05p37_117291_c1
308 nmdc:mga05p37_121107_c1
309 nmdc:mga08y16_44768_c1
310 Ga0500643_000376
311 Ga0500643_000745
312 Ga0500643_017547
313 Ga0500566_0016103
314 Ga0500641_0000264
315 Ga0500641_0001246
316 Ga0500562_000288
317 Ga0500562_000578
318 Ga0500562_003345
319 Ga0500595_005875
320 Ga0500595_012318
321 Ga0500608_004676
322 Ga0500559_0000040
323 Ga0500559_0014659
324 Ga0500616_0013298
325 Ga0500645_000419
326 Ga0500645_000833
327 Ga0500645_001784
328 2643883550
329 2644000221
330 2644085017
331 2644342569
332 2644352035
333 2644365869
334 2644551914
335 2644553050
336 2793073284
337 2879110181
338 2885384944
339 2889039682
340 2906613315
341 2928974824
342 2941487521
343 2977242132
344 3005475448
345 8006967164
346 8056673698

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
8gxo-assembly1.cif.gz_A the crystal structure of csfaomt1 in complex with sah 0.7402 553 662
5lhm-assembly1.cif.gz_A crystal structure of safc from myxococcus xanthus apo-form 0.7397 554 662
3bwb-assembly1.cif.gz_A crystal structure of the apo form of spermidine synthase from trypanosoma cruzi at 2.5 a resolution 0.7091 492 714
4qtt-assembly2.cif.gz_D structure of s. cerevisiae bud23-trm112 complex involved in formation of m7g1575 on 18s rrna (apo-form) 0.7003 541 714
6o64-assembly3.cif.gz_E crystal structure of arabidopsis thaliana spermidine synthase isoform 2 (atspds2) 0.6849 484 712
ID Description Score Start End Superfamily
af_Q3EC77_452_601_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7482 553 711 3.40.50.150
5lhmA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7397 554 662 3.40.50.150
af_I1JZX5_64_282_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7252 550 714 3.40.50.150
af_B4E3X6_90_272_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7162 541 715 3.40.50.150
af_Q3EC77_452_601_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.6951 553 711 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A3B1D1U0-F1-model_v4 Spermidine synthase 0.9524 516 749 GO:0006596
AF-A0A2V8LLK2-F1-model_v4 Spermidine synthase 0.9376 498 746 GO:0006596
AF-A0A2V6DQU3-F1-model_v4 Ferrichrome ABC transporter permease 0.9348 66 383 GO:0016020
AF-A0A3B1D1U0-F1-model_v4 Spermidine synthase 0.9328 516 749 GO:0006596
AF-A0A7Y5W9T3-F1-model_v4 Fused MFS/spermidine synthase 0.9241 16 749 GO:0006596
GO:0016020

Map