F263780

General Info

Members Datasets Scaffolds Average Seq Length
174 112 174 682

Family's Representative Sequence

Representative Sequence 3300005289|Ga0065704_10082086|Ga0065704_100820863
Length 716
Sequence MDATNSQSVIQKLQLTPPWRERLFPNNEWVLLLVIVLECVVFSITGSNFLSGANAFEITRLSVEVGLLALVLTPIVITGGIDLSVGSMIGLAAVVLGGLWRDAHLPILIAALVTLLVGIVGGGLNALMISRLKFPPLIVTLGTFSLFRGIAEGLTGGIENYSGFSSRFLFLGQGYVGGIIPTQLFILIVAIAICAWWLHRTSYGRSLYAIGFSAEGARYAGIPLERRLAFVYVLSGLVSSVAAIIYVAHLGQAKSDAGTGYELMAITAVVLGGTSIFGGRGTVLGTVLGLFAIVILQNGLRLSGQPAELAGVLTGVLLVGTILIDRLSSRLEARRRAGVGAERDLTNRQSAIANRQSFEEDFEVRNSQIAILSGVILLAALIVAGSNWWSTRSLREEIRGSGKSSDAVTGPGTNGRKPVIALMPKAKGDPYFVSCKQGADEAAKELGVELLWDGPTDLDPAKQNEVVEAWITRGVDVIAVSVENKVGISSVLRKAREKGIKVITWDADAERDARDFLINQATPQGIGYTLTDEAARILNNKGEFAIITASLSAANQNEWIKFIKERLAQKYPDLKLVTIQPSEGDRDRAFSETQTVLKVYPNVKLVMAIAAPAVPGAAEAVQQSGRKDVKVTGLSLPNMNKPYVHAGVVESIVLWNTVDLGYLTVYAANALITGQLKRSDKELQAGRLAKIEVADDEVRLGAPFIFNKDNIDRFNF

Samples

Sample ID Description Type Environment
1 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
2 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
52 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
56 3300025223 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
93 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
94 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
104 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
105 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
106 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
107 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
108 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
109 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
110 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.57
Nodule 0
Rhizoplane 1.15
Rhizosphere 97.7
Stem 0
Stem Tuber 0
Unclassified 0.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24748J21848_1000012 3300002074 Bacteria 152599
2 JGI24034J26672_10000003 3300002239 Bacteria 501747
3 JGI24751J29686_10000535 3300002459 Bacteria 10679
4 Ga0065704_10073046 3300005289 Bacteria 7632
5 Ga0065704_10082086 3300005289 Bacteria 3656
6 Ga0065715_10003377 3300005293 Bacteria 7018
7 Ga0065707_10003862 3300005295 Bacteria 4456
8 Ga0065707_10083947 3300005295 Bacteria 7914
9 Ga0070670_100000095 3300005331 Bacteria 83302
10 Ga0070670_100041264 3300005331 Bacteria 3967
11 Ga0068869_100078544 3300005334 Bacteria 2458
12 Ga0070660_100033821 3300005339 Bacteria 3857
13 Ga0070687_100001894 3300005343 Bacteria 7605
14 Ga0070669_100002599 3300005353 Bacteria 13051
15 Ga0070669_100036845 3300005353 Bacteria 3546
16 Ga0070703_10000142 3300005406 Bacteria 37070
17 Ga0070700_100006201 3300005441 Bacteria 6373
18 Ga0070700_100013785 3300005441 Bacteria 4547
19 Ga0070700_100035000 3300005441 Bacteria 3036
20 Ga0070694_100001899 3300005444 Bacteria 12389
21 Ga0070694_100009703 3300005444 Bacteria 5911
22 Ga0070662_100053249 3300005457 Bacteria 2929
23 Ga0070662_100053524 3300005457 Bacteria 2922
24 Ga0070707_100000423 3300005468 Bacteria 41848
25 Ga0070698_100001987 3300005471 Bacteria 22694
26 Ga0070698_100025109 3300005471 Bacteria 6211
27 Ga0070699_100002830 3300005518 Bacteria 15479
28 Ga0070699_100013229 3300005518 Bacteria 7114
29 Ga0070699_100057656 3300005518 Bacteria 3364
30 Ga0070697_100000726 3300005536 Bacteria 24563
31 Ga0068853_100058292 3300005539 Bacteria 3333
32 Ga0070686_100005493 3300005544 Bacteria 7018
33 Ga0068855_100021106 3300005563 Bacteria 7809
34 Ga0070664_100013648 3300005564 Bacteria 6620
35 Ga0068857_100030625 3300005577 Bacteria 4752
36 Ga0068857_100084093 3300005577 Bacteria 2843
37 Ga0068856_100002448 3300005614 Bacteria 19099
38 Ga0070702_100008499 3300005615 Bacteria 4976
39 Ga0068859_100024357 3300005617 Bacteria 6072
40 Ga0068859_100151493 3300005617 Bacteria 2395
41 Ga0068864_100008776 3300005618 Bacteria 8332
42 Ga0068866_10009287 3300005718 Bacteria 4169
43 Ga0068858_100000277 3300005842 Bacteria 55193
44 Ga0068860_100041690 3300005843 Bacteria 4385
45 Ga0068860_100078086 3300005843 Bacteria 3149
46 Ga0068862_100008414 3300005844 Bacteria 8537
47 Ga0068862_100082904 3300005844 Bacteria 2784
48 Ga0081455_10077899 3300005937 Bacteria 2725
49 Ga0097621_100009961 3300006237 Bacteria 6927
50 Ga0068871_100054949 3300006358 Bacteria 3232
51 Ga0075428_100000060 3300006844 Bacteria 88550
52 Ga0075428_100003750 3300006844 Bacteria 16657
53 Ga0075428_100004932 3300006844 Bacteria 14814
54 Ga0075431_100000825 3300006847 Bacteria 27053
55 Ga0075431_100016374 3300006847 Bacteria 7523
56 Ga0075431_100036349 3300006847 Bacteria 5073
57 Ga0075433_10016902 3300006852 Bacteria 6029
58 Ga0075433_10031155 3300006852 Bacteria 4556
59 Ga0075434_100000789 3300006871 Bacteria 25020
60 Ga0075434_100029845 3300006871 Bacteria 5367
61 Ga0075436_100001673 3300006914 Bacteria 15155
62 Ga0075436_100010460 3300006914 Bacteria 6359
63 Ga0097620_100024360 3300006931 Bacteria 6072
64 Ga0097620_100151489 3300006931 Bacteria 2395
65 Ga0075435_100027036 3300007076 Bacteria 4484
66 Ga0099794_10001081 3300007265 Bacteria 9313
67 Ga0111539_10000002 3300009094 Bacteria 983359
68 Ga0111539_10003757 3300009094 Bacteria 19991
69 Ga0111539_10016377 3300009094 Bacteria 9192
70 Ga0111539_10017878 3300009094 Bacteria 8780
71 Ga0111539_10028702 3300009094 Bacteria 6786
72 Ga0111539_10040809 3300009094 Bacteria 5584
73 Ga0111539_10043173 3300009094 Bacteria 5406
74 Ga0111539_10066677 3300009094 Bacteria 4252
75 Ga0105247_10000003 3300009101 Bacteria 694517
76 Ga0114129_10000241 3300009147 Bacteria 61333
77 Ga0114129_10035263 3300009147 Bacteria 7068
78 Ga0114129_10074192 3300009147 Bacteria 4739
79 Ga0114129_10112702 3300009147 Bacteria 3751
80 Ga0114129_10130373 3300009147 Bacteria 3453
81 Ga0105243_10000051 3300009148 Bacteria 139849
82 Ga0105242_10000379 3300009176 Bacteria 35359
83 Ga0105248_10078246 3300009177 Bacteria 3718
84 Ga0105249_10000654 3300009553 Bacteria 31467
85 Ga0105249_10030438 3300009553 Bacteria 4880
86 Ga0105246_10019055 3300011119 Bacteria 4379
87 Ga0157378_10043030 3300013297 Unclassified 4010
88 Ga0157378_10075873 3300013297 Bacteria 3028
89 Ga0157378_10108391 3300013297 Bacteria 2543
90 Ga0163162_10011644 3300013306 Bacteria 8575
91 Ga0163162_10015533 3300013306 Bacteria 7440
92 Ga0163162_10043295 3300013306 Bacteria 4508
93 Ga0163163_10000026 3300014325 Bacteria 179198
94 Ga0157380_10000514 3300014326 Bacteria 23717
95 Ga0157380_10007240 3300014326 Bacteria 7869
96 Ga0157380_10008051 3300014326 Bacteria 7510
97 Ga0157380_10009824 3300014326 Bacteria 6869
98 Ga0207672_1000116 3300025223 Bacteria 10720
99 Ga0207697_10000720 3300025315 Bacteria 18834
100 Ga0207653_10000247 3300025885 Bacteria 35017
101 Ga0207710_10000001 3300025900 Bacteria 1797433
102 Ga0207710_10002594 3300025900 Bacteria 8348
103 Ga0207647_10001939 3300025904 Bacteria 15813
104 Ga0207643_10000274 3300025908 Bacteria 35744
105 Ga0207662_10003226 3300025918 Bacteria 8351
106 Ga0207657_10053297 3300025919 Bacteria 3505
107 Ga0207652_10015314 3300025921 Bacteria 6227
108 Ga0207646_10000759 3300025922 Bacteria 41860
109 Ga0207681_10001887 3300025923 Bacteria 13410
110 Ga0207681_10006297 3300025923 Bacteria 7285
111 Ga0207681_10040097 3300025923 Bacteria 3114
112 Ga0207694_10042780 3300025924 Bacteria 3495
113 Ga0207650_10000006 3300025925 Bacteria 544730
114 Ga0207690_10026861 3300025932 Bacteria 3630
115 Ga0207706_10009707 3300025933 Bacteria 8834
116 Ga0207686_10000022 3300025934 Bacteria 174346
117 Ga0207686_10038587 3300025934 Bacteria 2892
118 Ga0207709_10000056 3300025935 Bacteria 221962
119 Ga0207691_10039645 3300025940 Bacteria 4358
120 Ga0207711_10093399 3300025941 Bacteria 2650
121 Ga0207679_10011992 3300025945 Bacteria 5634
122 Ga0207679_10055590 3300025945 Bacteria 2919
123 Ga0207703_10000080 3300026035 Bacteria 111786
124 Ga0207703_10056734 3300026035 Bacteria 3191
125 Ga0207708_10002909 3300026075 Bacteria 12621
126 Ga0207708_10018851 3300026075 Bacteria 5197
127 Ga0207702_10015024 3300026078 Bacteria 6420
128 Ga0207676_10001879 3300026095 Bacteria 15376
129 Ga0207674_10021816 3300026116 Bacteria 6892
130 Ga0207674_10050363 3300026116 Bacteria 4255
131 Ga0207675_100123453 3300026118 Bacteria 2451
132 Ga0207683_10053602 3300026121 Bacteria 3537
133 Ga0209588_1007740 3300027671 Bacteria 3172
134 Ga0207428_10000026 3300027907 Bacteria 255539
135 Ga0207428_10001192 3300027907 Bacteria 27970
136 Ga0207428_10010790 3300027907 Bacteria 8146
137 Ga0207428_10026464 3300027907 Bacteria 4843
138 Ga0268264_10030801 3300028381 Bacteria 4397
139 Ga0307408_100014954 3300031548 Bacteria 5164
140 Ga0307405_10075119 3300031731 Bacteria 2188
141 Ga0307406_10014584 3300031901 Unclassified 4525
142 Ga0307409_100028816 3300031995 Bacteria 3963
143 Ga0307416_100061229 3300032002 Unclassified 3070
144 Ga0436365_0485201 3300039437 Bacteria 13668
145 Ga0451577_0098570 3300042876 Bacteria 2610
146 Ga0495645_0002695 3300046543 Bacteria 12043
147 Ga0495658_0011241 3300046683 Bacteria 4497
148 Ga0496108_0121717 3300048911 Bacteria 2239
149 Ga0496109_0074534 3300048912 Bacteria 3120
150 Ga0501034_0097132 3300049571 Bacteria 2942
151 Ga0501047_0001683 3300049581 Bacteria 21524
152 Ga0501076_0011386 3300049592 Bacteria 6622
153 Ga0501035_0000808 3300049822 Bacteria 33357
154 Ga0501044_0000948 3300049823 Bacteria 34820
155 nmdc:mga05p37_23051_c1 3300050507 Bacteria 7553
156 nmdc:mga05p37_3408_c1 3300050507 Bacteria 18551
157 nmdc:mga06r32_103092_c1 3300050510 Bacteria 2801
158 nmdc:mga06r32_19883_c1 3300050510 Bacteria 6171
159 nmdc:mga08y16_112530_c1 3300050511 Bacteria 2834
160 nmdc:mga08y16_152651_c1 3300050511 Bacteria 2401
161 nmdc:mga08y16_2_c1 3300050511 Bacteria 983367
162 nmdc:mga08y16_31601_c1 3300050511 Bacteria 5568
163 nmdc:mga08y16_74921_c1 3300050511 Bacteria 3528
164 nmdc:mga08y16_9193_c1 3300050511 Bacteria 10371
165 nmdc:mga0n895_140435_c1 3300050512 Bacteria 2444
166 nmdc:mga0rr50_27252_c1 3300050513 Bacteria 3998
167 nmdc:mga08x19_804_c1 3300050514 Bacteria 19097
168 nmdc:mga0a205_21743_c1 3300050515 Bacteria 6065
169 nmdc:mga0a205_33349_c1 3300050515 Bacteria 4937
170 Ga0495619_0047493 3300053085 Unclassified 2827
171 Ga0500616_0000554 3300053153 Bacteria 46158
172 Ga0501084_0014368 3300054114 Bacteria 6562
173 Ga0501082_0001403 3300060353 Bacteria 21228
174 Ga0501082_0017845 3300060353 Bacteria 6112

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053085 Ga0495619_0047493 Ga0495619_0047493_969_2798 598
2 3300005937 Ga0081455_10077899 Ga0081455_100778992 611
3 3300048912 Ga0496109_0074534 Ga0496109_0074534_940_2925 612
4 3300053153 Ga0500616_0000554 Ga0500616_0000554_32260_34344 616
5 3300005577 Ga0068857_100084093 Ga0068857_1000840932 626
6 3300060353 Ga0501082_0001403 Ga0501082_0001403_13785_15839 627
7 3300005331 Ga0070670_100041264 Ga0070670_1000412643 629
8 3300005468 Ga0070707_100000423 Ga0070707_10000042321 639
9 3300025315 Ga0207697_10000720 Ga0207697_1000072015 639
10 3300025922 Ga0207646_10000759 Ga0207646_100007591 639
11 3300026121 Ga0207683_10053602 Ga0207683_100536021 639
12 3300005518 Ga0070699_100013229 Ga0070699_1000132292 640
13 3300009094 Ga0111539_10066677 Ga0111539_100666773 640
14 3300025923 Ga0207681_10040097 Ga0207681_100400972 640
15 3300039437 Ga0436365_0485201 Ga0436365_0485201_11268_13373 643
16 3300006871 Ga0075434_100000789 Ga0075434_10000078910 646
17 3300009094 Ga0111539_10017878 Ga0111539_100178782 646
18 3300027907 Ga0207428_10026464 Ga0207428_100264642 646
19 3300049592 Ga0501076_0011386 Ga0501076_0011386_431_2509 646
20 3300050511 nmdc:mga08y16_9193_c1 nmdc:mga08y16_9193_c1_4566_6614 646
21 3300054114 Ga0501084_0014368 Ga0501084_0014368_3944_6022 646
22 3300060353 Ga0501082_0017845 Ga0501082_0017845_3721_5799 646
23 3300009094 Ga0111539_10000002 Ga0111539_10000002733 647
24 3300050510 nmdc:mga06r32_103092_c1 nmdc:mga06r32_103092_c1_600_2576 647
25 3300050511 nmdc:mga08y16_2_c1 nmdc:mga08y16_2_c1_144722_146698 647
26 3300009147 Ga0114129_10000241 Ga0114129_1000024113 649
27 3300042876 Ga0451577_0098570 Ga0451577_0098570_136_2190 649
28 3300050507 nmdc:mga05p37_3408_c1 nmdc:mga05p37_3408_c1_14210_16297 649
29 3300006844 Ga0075428_100000060 Ga0075428_10000006065 653
30 3300006847 Ga0075431_100016374 Ga0075431_1000163745 653
31 3300027907 Ga0207428_10000026 Ga0207428_1000002680 653
32 3300006852 Ga0075433_10016902 Ga0075433_100169023 654
33 3300014326 Ga0157380_10000514 Ga0157380_100005146 654
34 3300050515 nmdc:mga0a205_21743_c1 nmdc:mga0a205_21743_c1_2933_4990 654
35 3300031548 Ga0307408_100014954 Ga0307408_1000149543 655
36 3300031731 Ga0307405_10075119 Ga0307405_100751191 655
37 3300031901 Ga0307406_10014584 Ga0307406_100145842 655
38 3300032002 Ga0307416_100061229 Ga0307416_1000612291 655
39 3300005614 Ga0068856_100002448 Ga0068856_10000244811 656
40 3300006852 Ga0075433_10031155 Ga0075433_100311554 656
41 3300006871 Ga0075434_100029845 Ga0075434_1000298454 656
42 3300006914 Ga0075436_100010460 Ga0075436_1000104602 656
43 3300007076 Ga0075435_100027036 Ga0075435_1000270362 656
44 3300009147 Ga0114129_10112702 Ga0114129_101127022 656
45 3300026078 Ga0207702_10015024 Ga0207702_100150241 656
46 3300050512 nmdc:mga0n895_140435_c1 nmdc:mga0n895_140435_c1_120_2186 656
47 3300050513 nmdc:mga0rr50_27252_c1 nmdc:mga0rr50_27252_c1_883_2949 656
48 3300005334 Ga0068869_100078544 Ga0068869_1000785442 657
49 3300006847 Ga0075431_100000825 Ga0075431_10000082516 657
50 3300013306 Ga0163162_10011644 Ga0163162_100116443 657
51 3300046543 Ga0495645_0002695 Ga0495645_0002695_3370_5379 657
52 3300046683 Ga0495658_0011241 Ga0495658_0011241_18_2027 657
53 3300005444 Ga0070694_100009703 Ga0070694_1000097034 658
54 3300005518 Ga0070699_100057656 Ga0070699_1000576562 659
55 3300009094 Ga0111539_10003757 Ga0111539_100037577 659
56 3300009094 Ga0111539_10040809 Ga0111539_100408092 659
57 3300050511 nmdc:mga08y16_31601_c1 nmdc:mga08y16_31601_c1_1775_3784 659
58 3300009147 Ga0114129_10130373 Ga0114129_101303732 661
59 3300005718 Ga0068866_10009287 Ga0068866_100092873 664
60 3300013297 Ga0157378_10075873 Ga0157378_100758732 664
61 3300025900 Ga0207710_10002594 Ga0207710_100025942 665
62 3300005353 Ga0070669_100002599 Ga0070669_1000025997 666
63 3300005441 Ga0070700_100035000 Ga0070700_1000350002 666
64 3300005617 Ga0068859_100151493 Ga0068859_1001514931 666
65 3300005844 Ga0068862_100082904 Ga0068862_1000829042 666
66 3300006844 Ga0075428_100004932 Ga0075428_1000049325 666
67 3300006847 Ga0075431_100036349 Ga0075431_1000363493 666
68 3300006931 Ga0097620_100151489 Ga0097620_1001514892 666
69 3300009094 Ga0111539_10043173 Ga0111539_100431733 666
70 3300009147 Ga0114129_10035263 Ga0114129_100352632 666
71 3300009147 Ga0114129_10074192 Ga0114129_100741921 666
72 3300009553 Ga0105249_10000654 Ga0105249_1000065417 666
73 3300025923 Ga0207681_10006297 Ga0207681_100062972 666
74 3300050507 nmdc:mga05p37_23051_c1 nmdc:mga05p37_23051_c1_220_2256 666
75 3300050510 nmdc:mga06r32_19883_c1 nmdc:mga06r32_19883_c1_1050_3086 666
76 3300050511 nmdc:mga08y16_74921_c1 nmdc:mga08y16_74921_c1_451_2487 666
77 3300005339 Ga0070660_100033821 Ga0070660_1000338213 668
78 3300005457 Ga0070662_100053524 Ga0070662_1000535242 668
79 3300005536 Ga0070697_100000726 Ga0070697_1000007263 668
80 3300005563 Ga0068855_100021106 Ga0068855_1000211066 668
81 3300005564 Ga0070664_100013648 Ga0070664_1000136483 668
82 3300025919 Ga0207657_10053297 Ga0207657_100532973 668
83 3300025921 Ga0207652_10015314 Ga0207652_100153143 668
84 3300025932 Ga0207690_10026861 Ga0207690_100268613 668
85 3300025933 Ga0207706_10009707 Ga0207706_100097076 668
86 3300025945 Ga0207679_10011992 Ga0207679_100119922 668
87 3300031995 Ga0307409_100028816 Ga0307409_1000288163 668
88 3300009094 Ga0111539_10028702 Ga0111539_100287023 670
89 3300050511 nmdc:mga08y16_112530_c1 nmdc:mga08y16_112530_c1_387_2480 670
90 3300005471 Ga0070698_100025109 Ga0070698_1000251093 673
91 3300025941 Ga0207711_10093399 Ga0207711_100933992 674
92 3300025945 Ga0207679_10055590 Ga0207679_100555902 674
93 3300026116 Ga0207674_10050363 Ga0207674_100503633 674
94 3300005441 Ga0070700_100006201 Ga0070700_1000062011 675
95 3300025924 Ga0207694_10042780 Ga0207694_100427802 675
96 3300025934 Ga0207686_10038587 Ga0207686_100385872 675
97 3300026075 Ga0207708_10002909 Ga0207708_100029092 675
98 3300026118 Ga0207675_100123453 Ga0207675_1001234532 675
99 3300049571 Ga0501034_0097132 Ga0501034_0097132_543_2603 675
100 3300049581 Ga0501047_0001683 Ga0501047_0001683_14187_16247 675
101 3300049822 Ga0501035_0000808 Ga0501035_0000808_12071_14131 675
102 3300049823 Ga0501044_0000948 Ga0501044_0000948_28977_31037 675
103 3300009177 Ga0105248_10078246 Ga0105248_100782462 676
104 3300005843 Ga0068860_100078086 Ga0068860_1000780862 677
105 3300009553 Ga0105249_10030438 Ga0105249_100304382 677
106 3300048911 Ga0496108_0121717 Ga0496108_0121717_141_2225 677
107 3300050515 nmdc:mga0a205_33349_c1 nmdc:mga0a205_33349_c1_794_2872 677
108 3300005293 Ga0065715_10003377 Ga0065715_100033773 678
109 3300005539 Ga0068853_100058292 Ga0068853_1000582922 678
110 3300005615 Ga0070702_100008499 Ga0070702_1000084993 678
111 3300006237 Ga0097621_100009961 Ga0097621_1000099614 678
112 3300006358 Ga0068871_100054949 Ga0068871_1000549492 678
113 3300013306 Ga0163162_10015533 Ga0163162_100155337 678
114 3300025904 Ga0207647_10001939 Ga0207647_100019398 678
115 3300025923 Ga0207681_10001887 Ga0207681_100018872 678
116 3300005289 Ga0065704_10073046 Ga0065704_100730462 679
117 3300005295 Ga0065707_10083947 Ga0065707_100839472 679
118 3300027907 Ga0207428_10001192 Ga0207428_100011926 679
119 3300002459 JGI24751J29686_10000535 JGI24751J29686_100005353 680
120 3300005331 Ga0070670_100000095 Ga0070670_10000009524 680
121 3300006844 Ga0075428_100003750 Ga0075428_1000037509 680
122 3300007265 Ga0099794_10001081 Ga0099794_100010813 680
123 3300014325 Ga0163163_10000026 Ga0163163_10000026103 680
124 3300025925 Ga0207650_10000006 Ga0207650_1000000647 680
125 3300027671 Ga0209588_1007740 Ga0209588_10077403 680
126 3300050511 nmdc:mga08y16_152651_c1 nmdc:mga08y16_152651_c1_195_2324 680
127 3300005406 Ga0070703_10000142 Ga0070703_100001425 681
128 3300005444 Ga0070694_100001899 Ga0070694_1000018997 681
129 3300005617 Ga0068859_100024357 Ga0068859_1000243576 681
130 3300006931 Ga0097620_100024360 Ga0097620_1000243602 681
131 3300025885 Ga0207653_10000247 Ga0207653_100002475 681
132 3300025934 Ga0207686_10000022 Ga0207686_1000002282 681
133 3300025935 Ga0207709_10000056 Ga0207709_1000005683 681
134 3300026035 Ga0207703_10056734 Ga0207703_100567343 681
135 3300027907 Ga0207428_10010790 Ga0207428_100107903 681
136 3300005471 Ga0070698_100001987 Ga0070698_10000198716 682
137 3300006914 Ga0075436_100001673 Ga0075436_1000016739 682
138 3300009094 Ga0111539_10016377 Ga0111539_100163775 682
139 3300025940 Ga0207691_10039645 Ga0207691_100396453 682
140 3300050514 nmdc:mga08x19_804_c1 nmdc:mga08x19_804_c1_11427_13517 682
141 3300013306 Ga0163162_10043295 Ga0163162_100432953 683
142 3300009148 Ga0105243_10000051 Ga0105243_1000005120 686
143 3300009176 Ga0105242_10000379 Ga0105242_1000037913 686
144 3300002074 JGI24748J21848_1000012 JGI24748J21848_100001253 687
145 3300002239 JGI24034J26672_10000003 JGI24034J26672_10000003348 687
146 3300005289 Ga0065704_10082086 Ga0065704_100820863 687
147 3300005295 Ga0065707_10003862 Ga0065707_100038622 687
148 3300005343 Ga0070687_100001894 Ga0070687_1000018941 687
149 3300005353 Ga0070669_100036845 Ga0070669_1000368452 687
150 3300005441 Ga0070700_100013785 Ga0070700_1000137852 687
151 3300005457 Ga0070662_100053249 Ga0070662_1000532491 687
152 3300005518 Ga0070699_100002830 Ga0070699_1000028309 687
153 3300005544 Ga0070686_100005493 Ga0070686_1000054933 687
154 3300005577 Ga0068857_100030625 Ga0068857_1000306252 687
155 3300005618 Ga0068864_100008776 Ga0068864_1000087762 687
156 3300005842 Ga0068858_100000277 Ga0068858_10000027731 687
157 3300005843 Ga0068860_100041690 Ga0068860_1000416902 687
158 3300005844 Ga0068862_100008414 Ga0068862_1000084142 687
159 3300009101 Ga0105247_10000003 Ga0105247_10000003343 687
160 3300011119 Ga0105246_10019055 Ga0105246_100190552 687
161 3300013297 Ga0157378_10043030 Ga0157378_100430302 687
162 3300013297 Ga0157378_10108391 Ga0157378_101083911 687
163 3300014326 Ga0157380_10007240 Ga0157380_100072403 687
164 3300014326 Ga0157380_10008051 Ga0157380_100080513 687
165 3300014326 Ga0157380_10009824 Ga0157380_100098243 687
166 3300025223 Ga0207672_1000116 Ga0207672_10001164 687
167 3300025900 Ga0207710_10000001 Ga0207710_10000001966 687
168 3300025908 Ga0207643_10000274 Ga0207643_1000027411 687
169 3300025918 Ga0207662_10003226 Ga0207662_100032267 687
170 3300026035 Ga0207703_10000080 Ga0207703_1000008057 687
171 3300026075 Ga0207708_10018851 Ga0207708_100188513 687
172 3300026095 Ga0207676_10001879 Ga0207676_100018792 687
173 3300026116 Ga0207674_10021816 Ga0207674_100218162 687
174 3300028381 Ga0268264_10030801 Ga0268264_100308012 687

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

420

676

0.97

PF02653

BPD_transp_2

Branched-chain amino acid transport system / permease component

54

322

0.91

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

417

679

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
5bq3-assembly4.cif.gz_D crystal structure of a sugar abc transporter (actodo_00688) from actinomyces odontolyticus atcc 17982 at 2.60 a resolution 0.9562 390 687
1tm2-assembly1.cif.gz_A crystal structure of the apo form of the salmonella typhimurium ai-2 receptor lsrb 0.9313 390 687
4kvf-assembly1.cif.gz_A the crystal structure of a rhamnose abc transporter, periplasmic rhamnose-binding protein from kribbella flavida dsm 17836 0.9287 378 687
4kvf-assembly1.cif.gz_A the crystal structure of a rhamnose abc transporter, periplasmic rhamnose-binding protein from kribbella flavida dsm 17836 0.9143 378 687
5bq3-assembly4.cif.gz_D crystal structure of a sugar abc transporter (actodo_00688) from actinomyces odontolyticus atcc 17982 at 2.60 a resolution 0.9117 390 687
ID Description Score Start End Superfamily
af_P76142_29_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9751 391 488 3.40.50.2300
2qvcB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9559 390 489 3.40.50.2300
af_P76142_29_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9468 391 488 3.40.50.2300
af_P0AFS1_34_305_1.10.3470.10 Mainly Alpha;Orthogonal Bundle;ABC transporter involved in vitamin B12 uptake, BtuC;ABC transporter involved in vitamin B12 uptake, BtuC 0.9381 54 319 1.10.3470.10
4pz0A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9345 492 687 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A6V8LRA0-F1-model_v4 Periplasmic binding protein domain-containing protein 0.963 436 687 GO:0015762
GO:0030246
GO:0030288
AF-A0A6V8LRA0-F1-model_v4 Periplasmic binding protein domain-containing protein 0.9411 436 687 GO:0015762
GO:0030246
GO:0030288
AF-A0A6D0IG30-F1-model_v4 L-arabinose ABC transporter permease AraH 0.9382 27 300 GO:0005886
GO:0022857
AF-A0A6C1QXF3-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.928 402 684 GO:0005886
GO:0030246
GO:0030313
AF-A0A4R4NFQ8-F1-model_v4 ABC transporter permease 0.9271 26 324 GO:0005886
GO:0022857

Feature Viewer

pLDDT pTM Quality
72.37 0.6 Medium
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Predicted Structure (AlphaFold2)

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