F265407

General Info

Members Datasets Scaffolds Average Seq Length
174 118 348 433

Family's Representative Sequence

Representative Sequence 3300053103|Ga0500555_000005|Ga0500555_000005_42565_43947
Length 460
Sequence MAAHASLPEKIVCVSLYYSPIIGEMKQPVFKTLTLDAIVGGGQAIGTLDNGKKAFVWGGLPQEKVTIQLTKSKSRLVEGIVTHVEEPSKERILPNDPESYLSTSPWQIMTFEAEQHYKASLIEEAFELHNIVLPEPITIYSDGKQYEYRNKIEYSFWFDTDTNDLSLAFFRRGTHGKIPISHTSLADPAITKLSQSILKALNEMSIEGRALKTLLIRCNQKGETAWQLYVKHEEFPSATLFEKIDSAFVNGEVIYSNPKSPASVITKRLAAKGGAALSDTILDTPFSYATEGFFQINLPVYEHTLLDMKQWIKQGKPLVDLYSGVGTIGLTIGEENVTLVEINEHAVGEMNNNIASLGKSGEATAILAASEDALDHITNDATIIVDPPRAGLHAAVVEKLLDVKPERIVYLSCNPVTQARDVALLAADYGVRAHTGYNFFPRTPHIEHLVILDLLPHKKA

Samples

Sample ID Description Type Environment
1 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
6 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
7 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
8 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
44 3300009984 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG Metagenome Rhizosphere
45 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
49 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
50 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
51 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
54 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
75 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
76 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
77 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
78 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
79 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
80 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
81 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
82 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
83 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
87 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
88 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
89 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
90 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
91 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
92 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
93 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
94 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
95 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
101 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
102 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
103 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
104 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
105 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
106 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
107 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
108 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
109 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
110 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
111 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
112 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
113 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
114 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
115 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
116 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
117 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
118 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.56
Nodule 0
Rhizoplane 1.72
Rhizosphere 71.84
Stem 0
Stem Tuber 0
Unclassified 6.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500555_000005 3300053103 Bacteria 342334
2 JGI24740J21852_10000923 3300001979 Bacteria 13063
3 JGI24739J22299_10000170 3300001989 Bacteria 21576
4 JGI24737J22298_10001870 3300001990 Bacteria 7521
5 JGI24743J22301_10005218 3300001991 Bacteria 2159
6 JGI24735J21928_10000054 3300002067 Bacteria 49038
7 JGI24738J21930_10000511 3300002075 Bacteria 11058
8 JGI24742J22300_10000112 3300002244 Bacteria 11736
9 rootH1_10010401 3300003316 Bacteria 137135
10 rootH2_10013487 3300003320 Bacteria 28817
11 rootL2_10228019 3300003322 Bacteria 2867
12 rootH1_10000983 3300003323 Bacteria 67573
13 Ga0065715_10129727 3300005293 Bacteria 2040
14 Ga0070658_10000063 3300005327 Bacteria 107300
15 Ga0070676_10000946 3300005328 Bacteria 14414
16 Ga0070683_100005480 3300005329 Bacteria 10601
17 Ga0070660_100000111 3300005339 Bacteria 50807
18 Ga0070660_100009410 3300005339 Bacteria 6870
19 Ga0070661_100008192 3300005344 Bacteria 7209
20 Ga0070675_100072513 3300005354 Bacteria 2859
21 Ga0070659_100007198 3300005366 Bacteria 8076
22 Ga0070662_100003379 3300005457 Bacteria 9946
23 Ga0068855_100008272 3300005563 Bacteria 12578
24 Ga0068855_100137465 3300005563 Bacteria 2787
25 Ga0070664_100000051 3300005564 Bacteria 70646
26 Ga0068857_100000018 3300005577 Bacteria 93371
27 Ga0068856_100000018 3300005614 Bacteria 151165
28 Ga0068856_100000707 3300005614 Bacteria 36271
29 Ga0068852_100000001 3300005616 Bacteria 716526
30 Ga0068852_100000089 3300005616 Bacteria 64388
31 Ga0068852_100088118 3300005616 Unclassified 2771
32 Ga0081455_10000001 3300005937 Bacteria 603871
33 Ga0075365_10000006 3300006038 Bacteria 123233
34 Ga0075365_10000026 3300006038 Bacteria 61245
35 Ga0075365_10000446 3300006038 Bacteria 15393
36 Ga0075365_10035626 3300006038 Bacteria 3221
37 Ga0075365_10137245 3300006038 Bacteria 1696
38 Ga0075368_10000024 3300006042 Bacteria 36612
39 Ga0075364_10006826 3300006051 Bacteria 6736
40 Ga0075364_10007822 3300006051 Bacteria 6363
41 Ga0075364_10077239 3300006051 Unclassified 2198
42 Ga0075362_10008763 3300006177 Bacteria 3886
43 Ga0075367_10000562 3300006178 Bacteria 14127
44 Ga0075369_10000329 3300006186 Bacteria 14116
45 Ga0075366_10029045 3300006195 Bacteria 3247
46 Ga0075370_10015001 3300006353 Bacteria 4141
47 Ga0075428_100000596 3300006844 Bacteria 36888
48 Ga0068865_100001338 3300006881 Bacteria 14337
49 Ga0105240_10000004 3300009093 Bacteria 708156
50 Ga0105240_10000571 3300009093 Bacteria 68281
51 Ga0105240_10002482 3300009093 Bacteria 29634
52 Ga0105245_10049033 3300009098 Unclassified 3779
53 Ga0105241_10043295 3300009174 Unclassified 3410
54 Ga0105241_10109616 3300009174 Bacteria 2208
55 Ga0105237_10000001 3300009545 Bacteria 1009213
56 Ga0105237_10000002 3300009545 Bacteria 702357
57 Ga0105238_10016676 3300009551 Bacteria 7442
58 Ga0105032_100004 3300009979 Bacteria 172013
59 Ga0105032_100024 3300009979 Bacteria 35613
60 Ga0105029_100545 3300009984 Bacteria 2063
61 Ga0105028_102557 3300009993 Bacteria 1903
62 Ga0105239_10000583 3300010375 Bacteria 52203
63 Ga0105246_10002109 3300011119 Bacteria 11999
64 Ga0105246_10003039 3300011119 Bacteria 10183
65 Ga0157373_10016132 3300013100 Bacteria 5453
66 Ga0157373_10030194 3300013100 Unclassified 3899
67 Ga0157371_10001166 3300013102 Bacteria 28219
68 Ga0157371_10180327 3300013102 Unclassified 1511
69 Ga0157370_10002562 3300013104 Bacteria 21821
70 Ga0157370_10004970 3300013104 Bacteria 15051
71 Ga0157369_10000024 3300013105 Bacteria 225851
72 Ga0157369_10000376 3300013105 Bacteria 59223
73 Ga0157369_10000466 3300013105 Bacteria 53695
74 Ga0157369_10000752 3300013105 Bacteria 41774
75 Ga0157369_10019351 3300013105 Bacteria 7617
76 Ga0157369_10023764 3300013105 Bacteria 6824
77 Ga0157374_10013543 3300013296 Bacteria 7120
78 Ga0157372_10000002 3300013307 Bacteria 687862
79 Ga0157372_10000008 3300013307 Bacteria 305449
80 Ga0157372_10090620 3300013307 Bacteria 3477
81 Ga0157372_10415429 3300013307 Bacteria 1568
82 Ga0157377_10000314 3300014745 Bacteria 22223
83 Ga0157377_10006655 3300014745 Bacteria 5525
84 Ga0157376_10000035 3300014969 Bacteria 151993
85 Ga0207647_10003632 3300025904 Bacteria 11550
86 Ga0207645_10001561 3300025907 Bacteria 18736
87 Ga0207705_10000093 3300025909 Bacteria 107314
88 Ga0207654_10059636 3300025911 Bacteria 2226
89 Ga0207695_10000009 3300025913 Bacteria 1034276
90 Ga0207695_10002362 3300025913 Bacteria 28047
91 Ga0207695_10009368 3300025913 Bacteria 12107
92 Ga0207671_10000003 3300025914 Bacteria 1065461
93 Ga0207671_10000008 3300025914 Bacteria 798229
94 Ga0207657_10001111 3300025919 Bacteria 28575
95 Ga0207657_10001943 3300025919 Bacteria 22314
96 Ga0207649_10019486 3300025920 Bacteria 3877
97 Ga0207694_10074921 3300025924 Bacteria 2649
98 Ga0207659_10053000 3300025926 Bacteria 2892
99 Ga0207706_10000209 3300025933 Bacteria 64890
100 Ga0207704_10000744 3300025938 Bacteria 14328
101 Ga0207661_10042806 3300025944 Unclassified 3571
102 Ga0207679_10000061 3300025945 Bacteria 98709
103 Ga0207667_10000128 3300025949 Bacteria 116173
104 Ga0207667_10110621 3300025949 Bacteria 2834
105 Ga0207702_10000179 3300026078 Bacteria 76263
106 Ga0207702_10001883 3300026078 Bacteria 20545
107 Ga0207674_10000215 3300026116 Bacteria 71809
108 Ga0207674_10009049 3300026116 Bacteria 11437
109 Ga0207698_10000001 3300026142 Bacteria 625389
110 Ga0207698_10000122 3300026142 Bacteria 48775
111 Ga0209974_10008485 3300027876 Unclassified 3512
112 Ga0314311_1155423 3300030733 Bacteria 1946
113 Ga0316179_1031414 3300030734 Bacteria 10083
114 Ga0316178_1163569 3300030735 Unclassified 1481
115 Ga0316183_1023757 3300030742 Bacteria 15252
116 Ga0316183_1077644 3300030742 Bacteria 14316
117 Ga0316183_1131244 3300030742 Bacteria 18970
118 Ga0316181_1063761 3300030744 Bacteria 284591
119 Ga0316182_1068087 3300030745 Unclassified 4655
120 Ga0316182_1071417 3300030745 Bacteria 26020
121 Ga0316182_1096705 3300030745 Bacteria 24836
122 Ga0316182_1276690 3300030745 Bacteria 4452
123 Ga0307516_10003607 3300031730 Bacteria 19698
124 Ga0307406_10000001 3300031901 Bacteria 638191
125 Ga0307406_10000411 3300031901 Bacteria 24835
126 Ga0395899_0010659 3300037312 Bacteria 7043
127 Ga0395899_0041164 3300037312 Bacteria 3453
128 Ga0395900_0000001 3300037418 Bacteria 931146
129 Ga0395900_0155860 3300037418 Bacteria 2332
130 Ga0395898_0000002 3300037466 Bacteria 931013
131 Ga0395901_0000072 3300038443 Bacteria 140394
132 Ga0395901_0010561 3300038443 Bacteria 9355
133 Ga0395901_0018650 3300038443 Bacteria 7086
134 Ga0439438_005474 3300041405 Bacteria 4658
135 Ga0439461_0000240 3300041410 Bacteria 7755
136 Ga0439442_003164 3300042002 Bacteria 3259
137 Ga0439446_0000001 3300042156 Bacteria 275840
138 Ga0466965_0095064 3300044683 Unclassified 1519
139 Ga0451576_0141888 3300045051 Bacteria 2505
140 Ga0495638_0000189 3300046460 Bacteria 93205
141 Ga0495638_0002359 3300046460 Bacteria 15471
142 Ga0495660_0000090 3300046810 Bacteria 98309
143 Ga0496100_0178375 3300048903 Bacteria 1535
144 Ga0496110_0113512 3300048913 Bacteria 2437
145 Ga0496115_0000007 3300048918 Bacteria 244991
146 Ga0501034_0000090 3300049571 Bacteria 165117
147 Ga0501034_0005549 3300049571 Bacteria 13758
148 Ga0501037_0000001 3300049573 Bacteria 753276
149 nmdc:mga03683_4851_c2 3300050489 Bacteria 3786
150 nmdc:mga00v17_351_c1 3300050491 Bacteria 25952
151 nmdc:mga0yw44_117474_c1 3300050492 Bacteria 1710
152 nmdc:mga0yw44_15_c1 3300050492 Bacteria 28425
153 nmdc:mga0yw44_1_c1 3300050492 Bacteria 702221
154 nmdc:mga0yw44_3276_c1 3300050492 Bacteria 7149
155 nmdc:mga0yw44_6_c1 3300050492 Bacteria 272478
156 nmdc:mga0k408_17611_c1 3300050493 Bacteria 3981
157 nmdc:mga06z11_346_c1 3300050494 Bacteria 17474
158 nmdc:mga0sz30_768_c1 3300050516 Bacteria 11703
159 Ga0500643_001324 3300053087 Bacteria 14496
160 Ga0500646_0000109 3300053090 Bacteria 23658
161 Ga0500646_0011442 3300053090 Bacteria 2284
162 Ga0500583_0000967 3300053092 Bacteria 8175
163 Ga0500583_0017942 3300053092 Unclassified 2866
164 Ga0500651_0000001 3300053093 Bacteria 529808
165 Ga0500641_0000001 3300053096 Bacteria 1115973
166 Ga0500569_000020 3300053109 Bacteria 42414
167 Ga0500594_0000004 3300053118 Bacteria 174508
168 Ga0500652_000001 3300053131 Bacteria 946868
169 Ga0500655_000632 3300053133 Bacteria 7071
170 Ga0500568_0017474 3300053139 Bacteria 3166
171 Ga0500588_0000616 3300053146 Bacteria 5868
172 Ga0500616_0000012 3300053153 Bacteria 681798
173 Ga0500570_000427 3300053724 Bacteria 16080
174 Ga0500570_061540 3300053724 Bacteria 1814
175 Ga0500555_000005
176 JGI24740J21852_10000923
177 JGI24739J22299_10000170
178 JGI24737J22298_10001870
179 JGI24743J22301_10005218
180 JGI24735J21928_10000054
181 JGI24738J21930_10000511
182 JGI24742J22300_10000112
183 rootH1_10010401
184 rootH2_10013487
185 rootL2_10228019
186 rootH1_10000983
187 Ga0065715_10129727
188 Ga0070658_10000063
189 Ga0070676_10000946
190 Ga0070683_100005480
191 Ga0070660_100000111
192 Ga0070660_100009410
193 Ga0070661_100008192
194 Ga0070675_100072513
195 Ga0070659_100007198
196 Ga0070662_100003379
197 Ga0068855_100008272
198 Ga0068855_100137465
199 Ga0070664_100000051
200 Ga0068857_100000018
201 Ga0068856_100000018
202 Ga0068856_100000707
203 Ga0068852_100000001
204 Ga0068852_100000089
205 Ga0068852_100088118
206 Ga0081455_10000001
207 Ga0075365_10000006
208 Ga0075365_10000026
209 Ga0075365_10000446
210 Ga0075365_10035626
211 Ga0075365_10137245
212 Ga0075368_10000024
213 Ga0075364_10006826
214 Ga0075364_10007822
215 Ga0075364_10077239
216 Ga0075362_10008763
217 Ga0075367_10000562
218 Ga0075369_10000329
219 Ga0075366_10029045
220 Ga0075370_10015001
221 Ga0075428_100000596
222 Ga0068865_100001338
223 Ga0105240_10000004
224 Ga0105240_10000571
225 Ga0105240_10002482
226 Ga0105245_10049033
227 Ga0105241_10043295
228 Ga0105241_10109616
229 Ga0105237_10000001
230 Ga0105237_10000002
231 Ga0105238_10016676
232 Ga0105032_100004
233 Ga0105032_100024
234 Ga0105029_100545
235 Ga0105028_102557
236 Ga0105239_10000583
237 Ga0105246_10002109
238 Ga0105246_10003039
239 Ga0157373_10016132
240 Ga0157373_10030194
241 Ga0157371_10001166
242 Ga0157371_10180327
243 Ga0157370_10002562
244 Ga0157370_10004970
245 Ga0157369_10000024
246 Ga0157369_10000376
247 Ga0157369_10000466
248 Ga0157369_10000752
249 Ga0157369_10019351
250 Ga0157369_10023764
251 Ga0157374_10013543
252 Ga0157372_10000002
253 Ga0157372_10000008
254 Ga0157372_10090620
255 Ga0157372_10415429
256 Ga0157377_10000314
257 Ga0157377_10006655
258 Ga0157376_10000035
259 Ga0207647_10003632
260 Ga0207645_10001561
261 Ga0207705_10000093
262 Ga0207654_10059636
263 Ga0207695_10000009
264 Ga0207695_10002362
265 Ga0207695_10009368
266 Ga0207671_10000003
267 Ga0207671_10000008
268 Ga0207657_10001111
269 Ga0207657_10001943
270 Ga0207649_10019486
271 Ga0207694_10074921
272 Ga0207659_10053000
273 Ga0207706_10000209
274 Ga0207704_10000744
275 Ga0207661_10042806
276 Ga0207679_10000061
277 Ga0207667_10000128
278 Ga0207667_10110621
279 Ga0207702_10000179
280 Ga0207702_10001883
281 Ga0207674_10000215
282 Ga0207674_10009049
283 Ga0207698_10000001
284 Ga0207698_10000122
285 Ga0209974_10008485
286 Ga0314311_1155423
287 Ga0316179_1031414
288 Ga0316178_1163569
289 Ga0316183_1023757
290 Ga0316183_1077644
291 Ga0316183_1131244
292 Ga0316181_1063761
293 Ga0316182_1068087
294 Ga0316182_1071417
295 Ga0316182_1096705
296 Ga0316182_1276690
297 Ga0307516_10003607
298 Ga0307406_10000001
299 Ga0307406_10000411
300 Ga0395899_0010659
301 Ga0395899_0041164
302 Ga0395900_0000001
303 Ga0395900_0155860
304 Ga0395898_0000002
305 Ga0395901_0000072
306 Ga0395901_0010561
307 Ga0395901_0018650
308 Ga0439438_005474
309 Ga0439461_0000240
310 Ga0439442_003164
311 Ga0439446_0000001
312 Ga0466965_0095064
313 Ga0451576_0141888
314 Ga0495638_0000189
315 Ga0495638_0002359
316 Ga0495660_0000090
317 Ga0496100_0178375
318 Ga0496110_0113512
319 Ga0496115_0000007
320 Ga0501034_0000090
321 Ga0501034_0005549
322 Ga0501037_0000001
323 nmdc:mga03683_4851_c2
324 nmdc:mga00v17_351_c1
325 nmdc:mga0yw44_117474_c1
326 nmdc:mga0yw44_15_c1
327 nmdc:mga0yw44_1_c1
328 nmdc:mga0yw44_3276_c1
329 nmdc:mga0yw44_6_c1
330 nmdc:mga0k408_17611_c1
331 nmdc:mga06z11_346_c1
332 nmdc:mga0sz30_768_c1
333 Ga0500643_001324
334 Ga0500646_0000109
335 Ga0500646_0011442
336 Ga0500583_0000967
337 Ga0500583_0017942
338 Ga0500651_0000001
339 Ga0500641_0000001
340 Ga0500569_000020
341 Ga0500594_0000004
342 Ga0500652_000001
343 Ga0500655_000632
344 Ga0500568_0017474
345 Ga0500588_0000616
346 Ga0500616_0000012
347 Ga0500570_000427
348 Ga0500570_061540

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01938

TRAM

TRAM domain

36

82

0.95

PF05958

tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

370

454

0.89

PF03602

Cons_hypoth95

Conserved hypothetical protein 95

302

424

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
1yvc-assembly1.cif.gz_A solution structure of the conserved protein from the gene locus mmp0076 of methanococcus maripaludis. northeast structural genomics target mrr5. 0.8862 6 59
2jjq-assembly1.cif.gz_A the crystal structure of pyrococcus abyssi trna (uracil-54, c5)- methyltransferase in complex with s-adenosyl-l-homocysteine 0.8697 8 430
2jjq-assembly1.cif.gz_A the crystal structure of pyrococcus abyssi trna (uracil-54, c5)- methyltransferase in complex with s-adenosyl-l-homocysteine 0.8655 8 430
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.8632 1 435
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.8614 1 435
ID Description Score Start End Superfamily
af_O07191_4_80_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9518 1 69 2.40.50.140
2jjqA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9311 279 430 3.40.50.150
af_P75817_215_375_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9073 280 433 3.40.50.150
af_A0A0P0VC63_86_202_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8942 282 380 3.40.50.150
af_Q54C42_410_584_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8934 281 429 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A660LXF5-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD 0.9935 300 434 GO:0070041
GO:0070475
AF-A0A660M9G7-F1-model_v4 TRAM domain-containing protein 0.9915 2 129 GO:0008168
GO:0032259
AF-A0A2M6W0W0-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD 0.9843 295 434 GO:0070041
GO:0070475
AF-A0A7Y1TP47-F1-model_v4 23S rRNA (Uracil-5-)-methyltransferase RumA 0.9836 360 433 GO:0070041
GO:0070475
AF-A0A3D4A7Q9-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD 0.9813 361 434 GO:0006396
GO:0008173
GO:0032259

Map