F268665

General Info

Members Datasets Scaffolds Average Seq Length
176 68 176 282

Family's Representative Sequence

Representative Sequence 3300036647|Ga0316582_0038666|Ga0316582_0038666_560_1456
Length 298
Sequence LINPIINKKKKGHPMPLSFRFGTVGSPIKTPKKPGGSVGAAIYTRELGMGALELGWVRSVRVSESTCEKIKQAGAEQDVLLSVHAPYYINLNADKEEWPKSRQRLMDAAHYGNLAGATEIIFHPGSYFGNPPGEVLPTAIKRLAGCIEELRSDGNPVTLRPETMGKSAMLGSLEDTLEMSKAIEGVQPCLDFAHLHARTGDGSMNSYDEWCQVLEKYASMLEDGSLKDLSCHLSGIEYTEKGEQNHLPMEESDFELRALFKALHKYGCAGRILCESPVMEEDALLFQKTWIEISGETL

Samples

Sample ID Description Type Environment
1 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
27 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
36 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
37 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
38 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
39 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
40 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
41 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
42 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
43 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
46 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
47 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
48 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
49 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
50 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
51 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
52 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
53 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
54 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
55 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
59 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
60 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
61 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
62 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
63 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
64 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
65 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
66 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
67 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
68 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL3b_contig_616613 2162886006 Bacteria 1356
2 JGI25406J46586_10004807 3300003203 Bacteria 6281
3 Ga0065704_10124423 3300005289 Bacteria 1707
4 Ga0065707_10000483 3300005295 Bacteria 53504
5 Ga0065707_10085226 3300005295 Bacteria 6335
6 Ga0065707_10086743 3300005295 Bacteria 5326
7 Ga0070705_100106951 3300005440 Unclassified 1779
8 Ga0070705_100119121 3300005440 Bacteria 1701
9 Ga0070694_100095494 3300005444 Bacteria 2093
10 Ga0070706_100049836 3300005467 Bacteria 3864
11 Ga0070706_100271054 3300005467 Unclassified 1584
12 Ga0070707_100166961 3300005468 Bacteria 2145
13 Ga0070698_100015791 3300005471 Bacteria 7975
14 Ga0070698_100016945 3300005471 Bacteria 7681
15 Ga0070698_100140934 3300005471 Bacteria 2362
16 Ga0070699_100000285 3300005518 Bacteria 48435
17 Ga0070699_100052453 3300005518 Bacteria 3529
18 Ga0070699_100160758 3300005518 Bacteria 1988
19 Ga0070695_100063816 3300005545 Unclassified 2395
20 Ga0070695_100085197 3300005545 Bacteria 2098
21 Ga0070695_100143964 3300005545 Bacteria 1656
22 Ga0070704_100374213 3300005549 Bacteria 1208
23 Ga0068859_100144570 3300005617 Unclassified 2453
24 Ga0068861_100043430 3300005719 Bacteria 3375
25 Ga0068862_100039786 3300005844 Bacteria 3995
26 Ga0068862_100108824 3300005844 Bacteria 2431
27 Ga0068862_100166775 3300005844 Bacteria 1969
28 Ga0081539_10006348 3300005985 Bacteria 11389
29 Ga0075427_10001276 3300006194 Bacteria 3218
30 Ga0075428_100018356 3300006844 Bacteria 7733
31 Ga0075428_100112490 3300006844 Unclassified 2965
32 Ga0075430_100140956 3300006846 Unclassified 2008
33 Ga0075431_100023357 3300006847 Bacteria 6326
34 Ga0075431_100122791 3300006847 Unclassified 2679
35 Ga0075431_100152276 3300006847 Bacteria 2381
36 Ga0075434_100082687 3300006871 Bacteria 3208
37 Ga0075429_100072839 3300006880 Bacteria 2992
38 Ga0075429_100075217 3300006880 Unclassified 2941
39 Ga0075429_100107634 3300006880 Bacteria 2436
40 Ga0075429_100345134 3300006880 Bacteria 1303
41 Ga0097620_100144565 3300006931 Unclassified 2453
42 Ga0114129_10084815 3300009147 Bacteria 4397
43 Ga0114129_10167231 3300009147 Bacteria 3000
44 Ga0105249_10034312 3300009553 Bacteria 4598
45 Ga0105249_10466723 3300009553 Bacteria 1303
46 Ga0157380_10090130 3300014326 Bacteria 2529
47 Ga0207643_10130152 3300025908 Bacteria 1497
48 Ga0207684_10327230 3300025910 Unclassified 1321
49 Ga0207646_10070872 3300025922 Bacteria 3113
50 Ga0207646_10124787 3300025922 Bacteria 2314
51 Ga0207709_10033084 3300025935 Bacteria 3033
52 Ga0207712_10081558 3300025961 Bacteria 2356
53 Ga0207674_10200991 3300026116 Bacteria 1942
54 Ga0207675_100021140 3300026118 Bacteria 6063
55 Ga0207675_100107514 3300026118 Bacteria 2630
56 Ga0268265_10122790 3300028380 Bacteria 2143
57 Ga0265334_10038956 3300028573 Bacteria 1867
58 Ga0265320_10010083 3300031240 Bacteria 5650
59 Ga0265331_10007916 3300031250 Bacteria 6089
60 Ga0265331_10100562 3300031250 Unclassified 1331
61 Ga0316575_10041053 3300031665 Bacteria 1829
62 Ga0316575_10073051 3300031665 Unclassified 1379
63 Ga0316579_10006342 3300031691 Bacteria 4825
64 Ga0316579_10017877 3300031691 Bacteria 3115
65 Ga0316579_10032328 3300031691 Bacteria 2399
66 Ga0316579_10039760 3300031691 Bacteria 2180
67 Ga0316579_10080775 3300031691 Unclassified 1548
68 Ga0316579_10187999 3300031691 Unclassified 998
69 Ga0316576_10222015 3300031727 Bacteria 1421
70 Ga0316578_10003032 3300031728 Bacteria 7570
71 Ga0307405_10065162 3300031731 Bacteria 2318
72 Ga0316577_10003713 3300031733 Bacteria 7765
73 Ga0316577_10008438 3300031733 Bacteria 5522
74 Ga0316577_10069174 3300031733 Bacteria 1972
75 Ga0316577_10087310 3300031733 Bacteria 1745
76 Ga0307409_100010153 3300031995 Bacteria 5834
77 Ga0316585_10016152 3300032137 Bacteria 2246
78 Ga0316580_10044740 3300032139 Bacteria 1366
79 Ga0316574_0000881 3300035398 Bacteria 13263
80 Ga0316574_0141439 3300035398 Unclassified 1550
81 Ga0316574_0190936 3300035398 Bacteria 1317
82 Ga0316582_0003656 3300036647 Bacteria 7593
83 Ga0316582_0024038 3300036647 Unclassified 3640
84 Ga0316582_0038666 3300036647 Bacteria 2967
85 Ga0316582_0039969 3300036647 Bacteria 2924
86 Ga0316582_0064858 3300036647 Bacteria 2350
87 Ga0316582_0071648 3300036647 Bacteria 2245
88 Ga0316582_0072916 3300036647 Unclassified 2227
89 Ga0316582_0120956 3300036647 Bacteria 1751
90 Ga0316582_0168231 3300036647 Unclassified 1487
91 Ga0316584_0010009 3300036712 Bacteria 6606
92 Ga0316584_0011352 3300036712 Bacteria 6256
93 Ga0316584_0029307 3300036712 Unclassified 4062
94 Ga0316584_0046912 3300036712 Unclassified 3227
95 Ga0316584_0047431 3300036712 Bacteria 3209
96 Ga0316584_0203547 3300036712 Unclassified 1460
97 Ga0316584_0225978 3300036712 Unclassified 1373
98 Ga0316584_0279593 3300036712 Bacteria 1213
99 Ga0316584_0531522 3300036712 Unclassified 823
100 Ga0316581_0003677 3300037588 Unclassified 3839
101 Ga0316581_0025072 3300037588 Bacteria 1773
102 Ga0316581_0073381 3300037588 Unclassified 1051
103 Ga0451577_0007597 3300042876 Bacteria 10636
104 Ga0451577_0026809 3300042876 Bacteria 5217
105 Ga0451577_0112738 3300042876 Bacteria 2434
106 Ga0451577_0165840 3300042876 Bacteria 1990
107 Ga0451577_0302775 3300042876 Bacteria 1448
108 Ga0451577_0417243 3300042876 Bacteria 1218
109 Ga0451577_0814175 3300042876 Unclassified 843
110 Ga0453683_0003658 3300044673 Bacteria 11263
111 Ga0453683_0013944 3300044673 Bacteria 5230
112 Ga0453683_0047830 3300044673 Unclassified 2682
113 Ga0453683_0214062 3300044673 Unclassified 1224
114 Ga0453684_0000003 3300044712 Bacteria 1481694
115 Ga0453684_0000074 3300044712 Bacteria 438364
116 Ga0453684_0000157 3300044712 Bacteria 304259
117 Ga0453684_0000447 3300044712 Bacteria 166799
118 Ga0453684_0000464 3300044712 Bacteria 161638
119 Ga0453684_0002232 3300044712 Bacteria 48042
120 Ga0453684_0012688 3300044712 Bacteria 13838
121 Ga0453684_0026748 3300044712 Bacteria 8314
122 Ga0453684_0030312 3300044712 Bacteria 7645
123 Ga0453684_0033512 3300044712 Bacteria 7158
124 Ga0453684_0041894 3300044712 Bacteria 6182
125 Ga0453684_0046956 3300044712 Bacteria 5734
126 Ga0453684_0059277 3300044712 Unclassified 4937
127 Ga0453684_0095429 3300044712 Bacteria 3655
128 Ga0453684_0142424 3300044712 Unclassified 2861
129 Ga0453684_0200731 3300044712 Bacteria 2325
130 Ga0453684_0214517 3300044712 Unclassified 2234
131 Ga0453684_0216330 3300044712 Unclassified 2223
132 Ga0453684_0237047 3300044712 Bacteria 2103
133 Ga0453684_0243479 3300044712 Unclassified 2069
134 Ga0453684_0265163 3300044712 Unclassified 1966
135 Ga0453684_0283175 3300044712 Unclassified 1890
136 Ga0453684_0292049 3300044712 Unclassified 1856
137 Ga0453684_0333425 3300044712 Unclassified 1715
138 Ga0453684_0415463 3300044712 Unclassified 1504
139 Ga0453684_0502411 3300044712 Bacteria 1342
140 Ga0453684_0556898 3300044712 Unclassified 1262
141 Ga0453684_0624384 3300044712 Bacteria 1178
142 Ga0453684_0803133 3300044712 Bacteria 1014
143 Ga0451576_0000073 3300045051 Bacteria 253094
144 Ga0451576_0002933 3300045051 Bacteria 24241
145 Ga0451576_0006787 3300045051 Bacteria 13921
146 Ga0451576_0015962 3300045051 Bacteria 8302
147 Ga0451576_0019324 3300045051 Bacteria 7435
148 Ga0451576_0167267 3300045051 Bacteria 2295
149 Ga0451576_0204589 3300045051 Unclassified 2061
150 Ga0451576_0554282 3300045051 Unclassified 1208
151 Ga0501037_0042865 3300049573 Bacteria 3326
152 Ga0501038_0343534 3300049574 Unclassified 1164
153 Ga0501039_0512357 3300049575 Bacteria 942
154 Ga0501071_0461029 3300049587 Bacteria 973
155 Ga0501073_0007256 3300049589 Bacteria 8254
156 Ga0501073_0022214 3300049589 Bacteria 4572
157 Ga0501073_0083769 3300049589 Bacteria 2219
158 Ga0501073_0105034 3300049589 Bacteria 1960
159 Ga0501073_0156884 3300049589 Bacteria 1577
160 Ga0501076_0053805 3300049592 Bacteria 3191
161 Ga0501079_0303599 3300049741 Bacteria 1249
162 Ga0501080_0025223 3300049742 Bacteria 5517
163 Ga0501081_0012798 3300049743 Bacteria 5517
164 nmdc:mga05p37_21205_c1 3300050507 Bacteria 3011
165 nmdc:mga05p37_255332_c1 3300050507 Bacteria 2101
166 nmdc:mga05p37_6813_c1 3300050507 Bacteria 13467
167 nmdc:mga05p37_87009_c1 3300050507 Bacteria 3852
168 nmdc:mga09592_137081_c1 3300050508 Bacteria 2108
169 nmdc:mga09592_148302_c1 3300050508 Unclassified 2023
170 nmdc:mga09592_15149_c1 3300050508 Bacteria 6299
171 nmdc:mga09592_69666_c1 3300050508 Bacteria 2984
172 nmdc:mga06r32_8064_c1 3300050510 Bacteria 9477
173 nmdc:mga06r32_80674_c1 3300050510 Bacteria 3167
174 nmdc:mga0a205_295843_c1 3300050515 Bacteria 1492
175 Ga0501084_0001920 3300054114 Bacteria 16602
176 Ga0501084_0164921 3300054114 Bacteria 1870

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0200731 Ga0453684_0200731_1229_1960 242
2 3300044712 Ga0453684_0333425 Ga0453684_0333425_56_796 246
3 3300036647 Ga0316582_0064858 Ga0316582_0064858_17_778 250
4 3300042876 Ga0451577_0417243 Ga0451577_0417243_452_1204 250
5 3300044712 Ga0453684_0265163 Ga0453684_0265163_1027_1779 250
6 3300035398 Ga0316574_0190936 Ga0316574_0190936_242_1024 260
7 3300036647 Ga0316582_0003656 Ga0316582_0003656_6390_7172 260
8 3300036712 Ga0316584_0010009 Ga0316584_0010009_2797_3579 260
9 3300042876 Ga0451577_0814175 Ga0451577_0814175_16_798 260
10 3300036712 Ga0316584_0531522 Ga0316584_0531522_23_811 261
11 3300044712 Ga0453684_0000074 Ga0453684_0000074_99432_100232 266
12 3300044712 Ga0453684_0502411 Ga0453684_0502411_295_1104 269
13 3300045051 Ga0451576_0554282 Ga0451576_0554282_24_848 274
14 3300044712 Ga0453684_0624384 Ga0453684_0624384_232_1068 278
15 3300044712 Ga0453684_0803133 Ga0453684_0803133_84_923 278
16 3300006847 Ga0075431_100152276 Ga0075431_1001522762 281
17 3300009147 Ga0114129_10167231 Ga0114129_101672312 281
18 3300044712 Ga0453684_0283175 Ga0453684_0283175_115_966 281
19 3300050507 nmdc:mga05p37_21205_c1 nmdc:mga05p37_21205_c1_1299_2147 281
20 3300050510 nmdc:mga06r32_8064_c1 nmdc:mga06r32_8064_c1_7912_8760 281
21 3300031250 Ga0265331_10100562 Ga0265331_101005622 282
22 3300031691 Ga0316579_10017877 Ga0316579_100178772 282
23 3300031691 Ga0316579_10080775 Ga0316579_100807752 282
24 3300031691 Ga0316579_10187999 Ga0316579_101879992 282
25 3300031727 Ga0316576_10222015 Ga0316576_102220152 282
26 3300031728 Ga0316578_10003032 Ga0316578_100030327 282
27 3300031733 Ga0316577_10003713 Ga0316577_100037136 282
28 3300032139 Ga0316580_10044740 Ga0316580_100447402 282
29 3300036647 Ga0316582_0039969 Ga0316582_0039969_951_1799 282
30 3300036712 Ga0316584_0029307 Ga0316584_0029307_2884_3732 282
31 3300036712 Ga0316584_0225978 Ga0316584_0225978_311_1159 282
32 3300044673 Ga0453683_0003658 Ga0453683_0003658_56_904 282
33 3300044712 Ga0453684_0041894 Ga0453684_0041894_4162_5010 282
34 3300044712 Ga0453684_0415463 Ga0453684_0415463_128_976 282
35 3300045051 Ga0451576_0000073 Ga0451576_0000073_178587_179435 282
36 3300045051 Ga0451576_0002933 Ga0451576_0002933_14406_15254 282
37 3300049573 Ga0501037_0042865 Ga0501037_0042865_962_1813 282
38 3300049574 Ga0501038_0343534 Ga0501038_0343534_193_1041 282
39 3300049589 Ga0501073_0007256 Ga0501073_0007256_3334_4185 282
40 3300049589 Ga0501073_0022214 Ga0501073_0022214_1959_2810 282
41 3300049589 Ga0501073_0105034 Ga0501073_0105034_58_909 282
42 3300049589 Ga0501073_0156884 Ga0501073_0156884_511_1362 282
43 3300049742 Ga0501080_0025223 Ga0501080_0025223_4202_5053 282
44 3300054114 Ga0501084_0001920 Ga0501084_0001920_227_1078 282
45 3300028573 Ga0265334_10038956 Ga0265334_100389562 283
46 3300031240 Ga0265320_10010083 Ga0265320_100100832 283
47 3300031250 Ga0265331_10007916 Ga0265331_100079162 283
48 3300031665 Ga0316575_10073051 Ga0316575_100730512 283
49 3300031691 Ga0316579_10006342 Ga0316579_100063422 283
50 3300031691 Ga0316579_10039760 Ga0316579_100397602 283
51 3300032137 Ga0316585_10016152 Ga0316585_100161524 283
52 3300035398 Ga0316574_0141439 Ga0316574_0141439_341_1195 283
53 3300036647 Ga0316582_0071648 Ga0316582_0071648_1081_1932 283
54 3300036647 Ga0316582_0120956 Ga0316582_0120956_47_901 283
55 3300036712 Ga0316584_0203547 Ga0316584_0203547_409_1263 283
56 3300042876 Ga0451577_0165840 Ga0451577_0165840_11_862 283
57 3300044673 Ga0453683_0214062 Ga0453683_0214062_102_953 283
58 3300044712 Ga0453684_0000464 Ga0453684_0000464_47272_48123 283
59 3300044712 Ga0453684_0030312 Ga0453684_0030312_1434_2285 283
60 3300044712 Ga0453684_0033512 Ga0453684_0033512_3168_4019 283
61 3300044712 Ga0453684_0046956 Ga0453684_0046956_2752_3603 283
62 3300044712 Ga0453684_0059277 Ga0453684_0059277_2650_3501 283
63 3300044712 Ga0453684_0556898 Ga0453684_0556898_146_997 283
64 3300045051 Ga0451576_0204589 Ga0451576_0204589_509_1360 283
65 3300049575 Ga0501039_0512357 Ga0501039_0512357_40_891 283
66 3300049589 Ga0501073_0083769 Ga0501073_0083769_914_1765 283
67 3300049743 Ga0501081_0012798 Ga0501081_0012798_4541_5392 283
68 3300054114 Ga0501084_0164921 Ga0501084_0164921_101_952 283
69 2162886006 SwRhRL3b_contig_616613 SwRhRL3b_0653.00001020 284
70 3300003203 JGI25406J46586_10004807 JGI25406J46586_100048076 284
71 3300005289 Ga0065704_10124423 Ga0065704_101244232 284
72 3300005295 Ga0065707_10000483 Ga0065707_1000048347 284
73 3300005295 Ga0065707_10085226 Ga0065707_100852264 284
74 3300005295 Ga0065707_10086743 Ga0065707_100867436 284
75 3300005440 Ga0070705_100106951 Ga0070705_1001069512 284
76 3300005440 Ga0070705_100119121 Ga0070705_1001191211 284
77 3300005444 Ga0070694_100095494 Ga0070694_1000954942 284
78 3300005467 Ga0070706_100049836 Ga0070706_1000498364 284
79 3300005467 Ga0070706_100271054 Ga0070706_1002710541 284
80 3300005468 Ga0070707_100166961 Ga0070707_1001669613 284
81 3300005471 Ga0070698_100015791 Ga0070698_1000157912 284
82 3300005471 Ga0070698_100016945 Ga0070698_1000169454 284
83 3300005471 Ga0070698_100140934 Ga0070698_1001409343 284
84 3300005518 Ga0070699_100000285 Ga0070699_10000028525 284
85 3300005518 Ga0070699_100052453 Ga0070699_1000524532 284
86 3300005518 Ga0070699_100160758 Ga0070699_1001607581 284
87 3300005545 Ga0070695_100063816 Ga0070695_1000638162 284
88 3300005545 Ga0070695_100085197 Ga0070695_1000851973 284
89 3300005545 Ga0070695_100143964 Ga0070695_1001439641 284
90 3300005549 Ga0070704_100374213 Ga0070704_1003742132 284
91 3300005617 Ga0068859_100144570 Ga0068859_1001445702 284
92 3300005719 Ga0068861_100043430 Ga0068861_1000434303 284
93 3300005844 Ga0068862_100039786 Ga0068862_1000397862 284
94 3300005844 Ga0068862_100108824 Ga0068862_1001088243 284
95 3300005844 Ga0068862_100166775 Ga0068862_1001667752 284
96 3300005985 Ga0081539_10006348 Ga0081539_100063485 284
97 3300006194 Ga0075427_10001276 Ga0075427_100012764 284
98 3300006844 Ga0075428_100018356 Ga0075428_1000183565 284
99 3300006844 Ga0075428_100112490 Ga0075428_1001124903 284
100 3300006846 Ga0075430_100140956 Ga0075430_1001409562 284
101 3300006847 Ga0075431_100023357 Ga0075431_1000233572 284
102 3300006847 Ga0075431_100122791 Ga0075431_1001227914 284
103 3300006871 Ga0075434_100082687 Ga0075434_1000826873 284
104 3300006880 Ga0075429_100072839 Ga0075429_1000728393 284
105 3300006880 Ga0075429_100075217 Ga0075429_1000752172 284
106 3300006880 Ga0075429_100107634 Ga0075429_1001076342 284
107 3300006880 Ga0075429_100345134 Ga0075429_1003451342 284
108 3300006931 Ga0097620_100144565 Ga0097620_1001445652 284
109 3300009147 Ga0114129_10084815 Ga0114129_100848152 284
110 3300009553 Ga0105249_10034312 Ga0105249_100343124 284
111 3300009553 Ga0105249_10466723 Ga0105249_104667231 284
112 3300014326 Ga0157380_10090130 Ga0157380_100901302 284
113 3300025908 Ga0207643_10130152 Ga0207643_101301521 284
114 3300025910 Ga0207684_10327230 Ga0207684_103272302 284
115 3300025922 Ga0207646_10070872 Ga0207646_100708722 284
116 3300025922 Ga0207646_10124787 Ga0207646_101247874 284
117 3300025935 Ga0207709_10033084 Ga0207709_100330842 284
118 3300025961 Ga0207712_10081558 Ga0207712_100815582 284
119 3300026116 Ga0207674_10200991 Ga0207674_102009912 284
120 3300026118 Ga0207675_100021140 Ga0207675_1000211403 284
121 3300026118 Ga0207675_100107514 Ga0207675_1001075142 284
122 3300028380 Ga0268265_10122790 Ga0268265_101227902 284
123 3300031665 Ga0316575_10041053 Ga0316575_100410532 284
124 3300031691 Ga0316579_10032328 Ga0316579_100323281 284
125 3300031731 Ga0307405_10065162 Ga0307405_100651623 284
126 3300031733 Ga0316577_10008438 Ga0316577_100084384 284
127 3300031733 Ga0316577_10069174 Ga0316577_100691742 284
128 3300031733 Ga0316577_10087310 Ga0316577_100873102 284
129 3300031995 Ga0307409_100010153 Ga0307409_1000101536 284
130 3300035398 Ga0316574_0000881 Ga0316574_0000881_11062_11928 284
131 3300036647 Ga0316582_0024038 Ga0316582_0024038_656_1531 284
132 3300036647 Ga0316582_0038666 Ga0316582_0038666_560_1456 284
133 3300036647 Ga0316582_0072916 Ga0316582_0072916_666_1526 284
134 3300036647 Ga0316582_0168231 Ga0316582_0168231_310_1185 284
135 3300036712 Ga0316584_0011352 Ga0316584_0011352_4216_5076 284
136 3300036712 Ga0316584_0046912 Ga0316584_0046912_1459_2319 284
137 3300036712 Ga0316584_0047431 Ga0316584_0047431_1870_2736 284
138 3300036712 Ga0316584_0279593 Ga0316584_0279593_260_1129 284
139 3300037588 Ga0316581_0003677 Ga0316581_0003677_1861_2736 284
140 3300037588 Ga0316581_0025072 Ga0316581_0025072_357_1226 284
141 3300037588 Ga0316581_0073381 Ga0316581_0073381_34_900 284
142 3300042876 Ga0451577_0007597 Ga0451577_0007597_3956_4810 284
143 3300042876 Ga0451577_0026809 Ga0451577_0026809_2818_3672 284
144 3300042876 Ga0451577_0112738 Ga0451577_0112738_1238_2092 284
145 3300042876 Ga0451577_0302775 Ga0451577_0302775_93_950 284
146 3300044673 Ga0453683_0013944 Ga0453683_0013944_1704_2561 284
147 3300044673 Ga0453683_0047830 Ga0453683_0047830_1001_1858 284
148 3300044712 Ga0453684_0000003 Ga0453684_0000003_202506_203360 284
149 3300044712 Ga0453684_0000157 Ga0453684_0000157_136543_137400 284
150 3300044712 Ga0453684_0000447 Ga0453684_0000447_136615_137472 284
151 3300044712 Ga0453684_0002232 Ga0453684_0002232_8197_9054 284
152 3300044712 Ga0453684_0012688 Ga0453684_0012688_4832_5689 284
153 3300044712 Ga0453684_0026748 Ga0453684_0026748_3533_4387 284
154 3300044712 Ga0453684_0095429 Ga0453684_0095429_2701_3558 284
155 3300044712 Ga0453684_0142424 Ga0453684_0142424_1756_2613 284
156 3300044712 Ga0453684_0214517 Ga0453684_0214517_1278_2135 284
157 3300044712 Ga0453684_0216330 Ga0453684_0216330_897_1751 284
158 3300044712 Ga0453684_0237047 Ga0453684_0237047_558_1412 284
159 3300044712 Ga0453684_0243479 Ga0453684_0243479_737_1594 284
160 3300044712 Ga0453684_0292049 Ga0453684_0292049_578_1435 284
161 3300045051 Ga0451576_0006787 Ga0451576_0006787_12255_13109 284
162 3300045051 Ga0451576_0015962 Ga0451576_0015962_7366_8223 284
163 3300045051 Ga0451576_0019324 Ga0451576_0019324_3403_4257 284
164 3300045051 Ga0451576_0167267 Ga0451576_0167267_185_1042 284
165 3300049587 Ga0501071_0461029 Ga0501071_0461029_83_937 284
166 3300049592 Ga0501076_0053805 Ga0501076_0053805_1938_2792 284
167 3300049741 Ga0501079_0303599 Ga0501079_0303599_80_934 284
168 3300050507 nmdc:mga05p37_255332_c1 nmdc:mga05p37_255332_c1_100_954 284
169 3300050507 nmdc:mga05p37_6813_c1 nmdc:mga05p37_6813_c1_6436_7290 284
170 3300050507 nmdc:mga05p37_87009_c1 nmdc:mga05p37_87009_c1_419_1273 284
171 3300050508 nmdc:mga09592_137081_c1 nmdc:mga09592_137081_c1_221_1078 284
172 3300050508 nmdc:mga09592_148302_c1 nmdc:mga09592_148302_c1_860_1714 284
173 3300050508 nmdc:mga09592_15149_c1 nmdc:mga09592_15149_c1_4390_5244 284
174 3300050508 nmdc:mga09592_69666_c1 nmdc:mga09592_69666_c1_336_1190 284
175 3300050510 nmdc:mga06r32_80674_c1 nmdc:mga06r32_80674_c1_2175_3032 284
176 3300050515 nmdc:mga0a205_295843_c1 nmdc:mga0a205_295843_c1_557_1411 284

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01261

AP_endonuc_2

Xylose isomerase-like TIM barrel

42

292

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nq9-assembly1.cif.gz_A high resolution crystal structure of escherichia coli endonuclease iv (endo iv) y72a mutant bound to damaged dna 0.8111 8 275
4hno-assembly1.cif.gz_A high resolution crystal structure of dna apurinic/apyrimidinic (ap) endonuclease iv nfo from thermatoga maritima 0.8064 5 282
1qum-assembly1.cif.gz_A crystal structure of escherichia coli endonuclease iv in complex with damaged dna 0.8054 8 275
4k1g-assembly2.cif.gz_B structure of e. coli nfo(endo iv)-h69a mutant bound to a cleaved dna duplex containing a alphada:t basepair 0.7989 5 275
2nqj-assembly1.cif.gz_A crystal structure of escherichia coli endonuclease iv (endo iv) e261q mutant bound to damaged dna 0.7962 5 275
ID Description Score Start End Superfamily
af_Q57597_11_270_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.9521 9 275 3.20.20.150
af_Q57597_11_270_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.945 9 275 3.20.20.150
af_P9WQ13_1_251_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8083 5 276 3.20.20.150
1qumA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8054 8 275 3.20.20.150
af_Q966U0_262_539_3.20.20.150 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Divalent-metal-dependent TIM barrel enzymes 0.8049 9 275 3.20.20.150
ID Description Score Start End GO Terms
AF-X0TVX1-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9937 197 278
AF-A0A3D0RSZ0-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9838 1 284 GO:0003677
GO:0003906
GO:0006284
GO:0008081
GO:0008270
AF-A0A2U2SLK8-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9832 1 284 GO:0003677
GO:0003906
GO:0006284
GO:0008081
GO:0008270
AF-A0A7X9J8I2-F1-model_v4 AP endonuclease 0.981 205 278 GO:0004519
AF-A0A3D0RSZ0-F1-model_v4 Xylose isomerase-like TIM barrel domain-containing protein 0.9803 1 284 GO:0003677
GO:0003906
GO:0006284
GO:0008081
GO:0008270

Feature Viewer

pLDDT pTM Quality
92.44 0.91 High
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Predicted Structure (AlphaFold2)

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