F270602

General Info

Members Datasets Scaffolds Average Seq Length
177 133 354 478

Family's Representative Sequence

Representative Sequence 3300038443|Ga0395901_0020398|Ga0395901_0020398_4449_5987
Length 512
Sequence MPRSGQHAGEGGKGQPVSFRHHLAHPWSPAGTPVLVVGDSMLDVYVLGAVDRISPEAPVPVVRQQDIRETAGGAANVAVNIVGLGGNAHLVACVGADHEGQRLASVLMGASVTCDLIPTPAKPTTVKTRFATGQHQLLRLDREDASPIAPDREDAILAAVARRIEGCRVVVMSDYNKGMLTDRVLAGVISLGRARGVPVIVDPKRRDFGAYRGATYLKPNRAELHHATGLPVASDADIERAGAVAAAATEASILVTRSEAGMSLVQPDGTAHHMPTHAQRVYDVTGAGDTVIAAFALGLASHRTVDEAMAFANLAGGIAVSKPGTAIVQGDELEAERSLLADDEVVPKGGLVNAETAARLRRIWKRQGLVVGFTNGCFDLIHPGHVSLLQGAAQACDRLIVGLNNDASVRRLKGPTRPVQDEEARAAVLGAIGHVNLVVLFEEDTPVSLIEQLQPDLLVKGADYTIDQIVGADIVQKAGGRVMTVELVPGQSTTRLIESGSSVARGTGKVRA

Samples

Sample ID Description Type Environment
1 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
7 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
8 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
9 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
14 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
15 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
18 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
19 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
48 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
49 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
50 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
52 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
53 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
54 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
82 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
84 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
85 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
86 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
87 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
88 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
89 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
90 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
93 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
94 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
95 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
96 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
97 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
98 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
99 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
100 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
101 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
102 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
111 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
112 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
113 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
120 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
121 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
124 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
125 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
126 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
127 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
128 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
129 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
130 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
131 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
132 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
133 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.87
Metatranscriptomes 0
Isolates 1.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.04
Nodule 0
Rhizoplane 2.82
Rhizosphere 80.79
Stem 0
Stem Tuber 0
Unclassified 5.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395901_0020398 3300038443 Bacteria 6784
2 JGI24736J21556_1003046 3300001904 Bacteria 2929
3 JGI24739J22299_10000031 3300001989 Bacteria 38713
4 JGI24739J22299_10001098 3300001989 Bacteria 10088
5 JGI24737J22298_10004473 3300001990 Bacteria 4868
6 JGI24737J22298_10006125 3300001990 Bacteria 4120
7 JGI24735J21928_10000328 3300002067 Bacteria 16528
8 JGI24735J21928_10004795 3300002067 Bacteria 4515
9 JGI24738J21930_10000583 3300002075 Bacteria 10465
10 JGI25159J45721_1002373 3300002987 Bacteria 7180
11 JGI25165J46597_1000100 3300003214 Bacteria 157712
12 rootH2_10156931 3300003320 Bacteria 4757
13 rootL2_10035570 3300003322 Bacteria 11728
14 rootL2_10043401 3300003322 Bacteria 4626
15 rootH1_10055391 3300003323 Bacteria 5587
16 Ga0070658_10000201 3300005327 Bacteria 52606
17 Ga0070658_10002105 3300005327 Bacteria 16697
18 Ga0070658_10005944 3300005327 Bacteria 9903
19 Ga0070658_10016473 3300005327 Bacteria 5916
20 Ga0070658_10124377 3300005327 Bacteria 2146
21 Ga0068869_100000105 3300005334 Bacteria 39634
22 Ga0070680_100064076 3300005336 Unclassified 3012
23 Ga0068868_100000003 3300005338 Bacteria 155611
24 Ga0070660_100000024 3300005339 Bacteria 94300
25 Ga0070660_100000125 3300005339 Bacteria 48665
26 Ga0070661_100035012 3300005344 Unclassified 3644
27 Ga0070675_100018099 3300005354 Bacteria 5607
28 Ga0070671_100046077 3300005355 Bacteria 3626
29 Ga0070663_100001707 3300005455 Bacteria 12196
30 Ga0070663_100003007 3300005455 Bacteria 9625
31 Ga0070681_10072298 3300005458 Unclassified 3412
32 Ga0068867_100000003 3300005459 Bacteria 217886
33 Ga0068853_100034560 3300005539 Bacteria 4292
34 Ga0068855_100000213 3300005563 Bacteria 73664
35 Ga0068855_100009225 3300005563 Bacteria 11919
36 Ga0068855_100046791 3300005563 Bacteria 5113
37 Ga0068855_100237096 3300005563 Bacteria 2040
38 Ga0068854_100000562 3300005578 Bacteria 22293
39 Ga0068856_100000729 3300005614 Bacteria 35627
40 Ga0068856_100001312 3300005614 Bacteria 26167
41 Ga0068856_100004537 3300005614 Bacteria 13806
42 Ga0070702_100022784 3300005615 Unclassified 3318
43 Ga0068852_100000301 3300005616 Bacteria 33216
44 Ga0081455_10005493 3300005937 Bacteria 13894
45 Ga0075368_10004933 3300006042 Bacteria 4553
46 Ga0097621_100016012 3300006237 Bacteria 5655
47 Ga0068871_100012507 3300006358 Bacteria 6261
48 Ga0068865_100000002 3300006881 Bacteria 285745
49 Ga0105240_10001585 3300009093 Bacteria 38598
50 Ga0105240_10009050 3300009093 Bacteria 14139
51 Ga0105240_10012310 3300009093 Bacteria 11820
52 Ga0105240_10016484 3300009093 Bacteria 10002
53 Ga0105240_10030928 3300009093 Bacteria 6953
54 Ga0105240_10238037 3300009093 Bacteria 2112
55 Ga0105245_10000060 3300009098 Bacteria 119425
56 Ga0105243_10000031 3300009148 Bacteria 185825
57 Ga0105241_10090048 3300009174 Bacteria 2419
58 Ga0105237_10020508 3300009545 Bacteria 6811
59 Ga0105238_10007124 3300009551 Bacteria 11188
60 Ga0105238_10011925 3300009551 Bacteria 8758
61 Ga0105239_10006757 3300010375 Bacteria 13248
62 Ga0105239_10024922 3300010375 Bacteria 6589
63 Ga0105239_10221389 3300010375 Bacteria 2122
64 Ga0157370_10000157 3300013104 Bacteria 84292
65 Ga0157374_10000105 3300013296 Bacteria 78376
66 Ga0157374_10022385 3300013296 Bacteria 5638
67 Ga0157378_10000787 3300013297 Bacteria 29458
68 Ga0157372_10015413 3300013307 Bacteria 8192
69 Ga0157375_10005817 3300013308 Bacteria 10730
70 Ga0157376_10000107 3300014969 Bacteria 59840
71 Ga0213872_10000815 3300021361 Bacteria 22580
72 Ga0207427_100496 3300025231 Bacteria 21012
73 Ga0209026_1001938 3300025250 Bacteria 8352
74 Ga0209148_1000112 3300025254 Bacteria 197101
75 Ga0209148_1000889 3300025254 Bacteria 20382
76 Ga0209233_1000143 3300025261 Bacteria 191568
77 Ga0209130_1000512 3300025284 Bacteria 39134
78 Ga0207426_1000181 3300025302 Bacteria 158308
79 Ga0207692_10029396 3300025898 Bacteria 2611
80 Ga0207647_10000203 3300025904 Bacteria 48448
81 Ga0207647_10000401 3300025904 Bacteria 35481
82 Ga0207647_10014307 3300025904 Bacteria 5473
83 Ga0207645_10005929 3300025907 Bacteria 8804
84 Ga0207705_10000014 3300025909 Bacteria 434286
85 Ga0207705_10000117 3300025909 Bacteria 88666
86 Ga0207707_10175448 3300025912 Bacteria 1872
87 Ga0207695_10007283 3300025913 Bacteria 14131
88 Ga0207695_10010286 3300025913 Bacteria 11457
89 Ga0207695_10039496 3300025913 Bacteria 5073
90 Ga0207671_10068178 3300025914 Bacteria 2650
91 Ga0207663_10045552 3300025916 Bacteria 2699
92 Ga0207660_10030963 3300025917 Unclassified 3681
93 Ga0207657_10000145 3300025919 Bacteria 72001
94 Ga0207657_10000351 3300025919 Bacteria 48962
95 Ga0207657_10142039 3300025919 Bacteria 1961
96 Ga0207694_10009444 3300025924 Bacteria 7352
97 Ga0207687_10064257 3300025927 Bacteria 2602
98 Ga0207644_10033545 3300025931 Bacteria 3588
99 Ga0207706_10012197 3300025933 Bacteria 7832
100 Ga0207686_10002208 3300025934 Bacteria 10713
101 Ga0207709_10000122 3300025935 Bacteria 116068
102 Ga0207704_10000003 3300025938 Bacteria 285808
103 Ga0207689_10000135 3300025942 Bacteria 62838
104 Ga0207667_10000007 3300025949 Bacteria 630590
105 Ga0207667_10035615 3300025949 Bacteria 5339
106 Ga0207667_10056210 3300025949 Bacteria 4135
107 Ga0207651_10000003 3300025960 Bacteria 308050
108 Ga0207640_10000106 3300025981 Bacteria 63751
109 Ga0207677_10000233 3300026023 Bacteria 43366
110 Ga0207678_10001286 3300026067 Bacteria 23196
111 Ga0207678_10008642 3300026067 Bacteria 8976
112 Ga0207702_10000460 3300026078 Bacteria 46054
113 Ga0207702_10001201 3300026078 Bacteria 26292
114 Ga0207702_10004259 3300026078 Bacteria 12772
115 Ga0207702_10075508 3300026078 Bacteria 2912
116 Ga0207648_10000007 3300026089 Bacteria 217865
117 Ga0207674_10029020 3300026116 Bacteria 5831
118 Ga0207698_10000368 3300026142 Bacteria 26451
119 Ga0209813_10002081 3300027866 Bacteria 4553
120 Ga0268266_10033373 3300028379 Bacteria 4375
121 Ga0265340_10061709 3300031247 Bacteria 1792
122 Ga0265339_10061046 3300031249 Bacteria 2030
123 Ga0265331_10014375 3300031250 Bacteria 4218
124 Ga0265316_10098468 3300031344 Bacteria 2225
125 Ga0265313_10000361 3300031595 Bacteria 49331
126 Ga0265313_10011525 3300031595 Bacteria 5487
127 Ga0265314_10039868 3300031711 Bacteria 3378
128 Ga0265342_10011367 3300031712 Bacteria 6100
129 Ga0395899_0001996 3300037312 Bacteria 16799
130 Ga0395900_0089511 3300037418 Bacteria 3164
131 Ga0395905_0011239 3300037471 Bacteria 8655
132 Ga0395905_0029423 3300037471 Bacteria 5175
133 Ga0395901_0077143 3300038443 Bacteria 3478
134 Ga0436365_1703724 3300039437 Bacteria 2736
135 Ga0436361_0554723 3300039447 Bacteria 2860
136 Ga0436361_1211654 3300039447 Bacteria 25502
137 Ga0436363_0858948 3300039450 Unclassified 1767
138 Ga0439448_0002472 3300042005 Bacteria 5037
139 Ga0439455_0000469 3300042012 Bacteria 5552
140 Ga0439458_0000712 3300042157 Bacteria 8584
141 Ga0466972_0006357 3300044658 Bacteria 5936
142 Ga0466966_0006812 3300044684 Bacteria 7571
143 Ga0466961_0028229 3300044693 Bacteria 3608
144 Ga0466964_0062831 3300044706 Bacteria 1549
145 Ga0466970_0094824 3300044765 Bacteria 1622
146 Ga0496103_0025967 3300048906 Unclassified 3543
147 Ga0496106_0120235 3300048909 Bacteria 2053
148 Ga0496107_0000470 3300048910 Bacteria 22130
149 Ga0496112_0084246 3300048915 Bacteria 3144
150 Ga0496114_0050029 3300048917 Unclassified 3478
151 Ga0496117_0051681 3300048920 Bacteria 2903
152 Ga0496119_0031874 3300048922 Bacteria 3523
153 Ga0496120_0016172 3300048923 Bacteria 4884
154 Ga0496121_0026549 3300048924 Bacteria 5451
155 Ga0496123_0022901 3300048926 Bacteria 4798
156 Ga0496126_0007549 3300048929 Bacteria 11898
157 Ga0501034_0004456 3300049571 Bacteria 15570
158 Ga0501034_0053438 3300049571 Bacteria 4067
159 Ga0501047_0192794 3300049581 Bacteria 1901
160 Ga0501067_0022348 3300049583 Bacteria 3501
161 Ga0501070_0081894 3300049586 Bacteria 2671
162 Ga0501072_0011130 3300049588 Bacteria 6866
163 Ga0501073_0001510 3300049589 Bacteria 17222
164 Ga0501073_0029311 3300049589 Bacteria 3933
165 Ga0501074_0065919 3300049590 Unclassified 2605
166 Ga0501080_0025142 3300049742 Bacteria 5527
167 Ga0501083_0053797 3300049744 Bacteria 2702
168 nmdc:mga06z11_44985_c1 3300050494 Bacteria 2230
169 nmdc:mga04h51_7508_c1 3300050495 Bacteria 2881
170 Ga0500643_000248 3300053087 Bacteria 49637
171 Ga0500595_019796 3300053119 Bacteria 2436
172 Ga0500642_0023521 3300053130 Bacteria 2475
173 Ga0500616_0036371 3300053153 Bacteria 2672
174 Ga0501082_0092081 3300060353 Bacteria 2618
175 Ga0466962_0035590 3300061719 Bacteria 2383
176 2883294105 2883291878 Bacteria 5894118
177 2883357355 2883354860 Bacteria 5865246
178 Ga0395901_0020398
179 JGI24736J21556_1003046
180 JGI24739J22299_10000031
181 JGI24739J22299_10001098
182 JGI24737J22298_10004473
183 JGI24737J22298_10006125
184 JGI24735J21928_10000328
185 JGI24735J21928_10004795
186 JGI24738J21930_10000583
187 JGI25159J45721_1002373
188 JGI25165J46597_1000100
189 rootH2_10156931
190 rootL2_10035570
191 rootL2_10043401
192 rootH1_10055391
193 Ga0070658_10000201
194 Ga0070658_10002105
195 Ga0070658_10005944
196 Ga0070658_10016473
197 Ga0070658_10124377
198 Ga0068869_100000105
199 Ga0070680_100064076
200 Ga0068868_100000003
201 Ga0070660_100000024
202 Ga0070660_100000125
203 Ga0070661_100035012
204 Ga0070675_100018099
205 Ga0070671_100046077
206 Ga0070663_100001707
207 Ga0070663_100003007
208 Ga0070681_10072298
209 Ga0068867_100000003
210 Ga0068853_100034560
211 Ga0068855_100000213
212 Ga0068855_100009225
213 Ga0068855_100046791
214 Ga0068855_100237096
215 Ga0068854_100000562
216 Ga0068856_100000729
217 Ga0068856_100001312
218 Ga0068856_100004537
219 Ga0070702_100022784
220 Ga0068852_100000301
221 Ga0081455_10005493
222 Ga0075368_10004933
223 Ga0097621_100016012
224 Ga0068871_100012507
225 Ga0068865_100000002
226 Ga0105240_10001585
227 Ga0105240_10009050
228 Ga0105240_10012310
229 Ga0105240_10016484
230 Ga0105240_10030928
231 Ga0105240_10238037
232 Ga0105245_10000060
233 Ga0105243_10000031
234 Ga0105241_10090048
235 Ga0105237_10020508
236 Ga0105238_10007124
237 Ga0105238_10011925
238 Ga0105239_10006757
239 Ga0105239_10024922
240 Ga0105239_10221389
241 Ga0157370_10000157
242 Ga0157374_10000105
243 Ga0157374_10022385
244 Ga0157378_10000787
245 Ga0157372_10015413
246 Ga0157375_10005817
247 Ga0157376_10000107
248 Ga0213872_10000815
249 Ga0207427_100496
250 Ga0209026_1001938
251 Ga0209148_1000112
252 Ga0209148_1000889
253 Ga0209233_1000143
254 Ga0209130_1000512
255 Ga0207426_1000181
256 Ga0207692_10029396
257 Ga0207647_10000203
258 Ga0207647_10000401
259 Ga0207647_10014307
260 Ga0207645_10005929
261 Ga0207705_10000014
262 Ga0207705_10000117
263 Ga0207707_10175448
264 Ga0207695_10007283
265 Ga0207695_10010286
266 Ga0207695_10039496
267 Ga0207671_10068178
268 Ga0207663_10045552
269 Ga0207660_10030963
270 Ga0207657_10000145
271 Ga0207657_10000351
272 Ga0207657_10142039
273 Ga0207694_10009444
274 Ga0207687_10064257
275 Ga0207644_10033545
276 Ga0207706_10012197
277 Ga0207686_10002208
278 Ga0207709_10000122
279 Ga0207704_10000003
280 Ga0207689_10000135
281 Ga0207667_10000007
282 Ga0207667_10035615
283 Ga0207667_10056210
284 Ga0207651_10000003
285 Ga0207640_10000106
286 Ga0207677_10000233
287 Ga0207678_10001286
288 Ga0207678_10008642
289 Ga0207702_10000460
290 Ga0207702_10001201
291 Ga0207702_10004259
292 Ga0207702_10075508
293 Ga0207648_10000007
294 Ga0207674_10029020
295 Ga0207698_10000368
296 Ga0209813_10002081
297 Ga0268266_10033373
298 Ga0265340_10061709
299 Ga0265339_10061046
300 Ga0265331_10014375
301 Ga0265316_10098468
302 Ga0265313_10000361
303 Ga0265313_10011525
304 Ga0265314_10039868
305 Ga0265342_10011367
306 Ga0395899_0001996
307 Ga0395900_0089511
308 Ga0395905_0011239
309 Ga0395905_0029423
310 Ga0395901_0077143
311 Ga0436365_1703724
312 Ga0436361_0554723
313 Ga0436361_1211654
314 Ga0436363_0858948
315 Ga0439448_0002472
316 Ga0439455_0000469
317 Ga0439458_0000712
318 Ga0466972_0006357
319 Ga0466966_0006812
320 Ga0466961_0028229
321 Ga0466964_0062831
322 Ga0466970_0094824
323 Ga0496103_0025967
324 Ga0496106_0120235
325 Ga0496107_0000470
326 Ga0496112_0084246
327 Ga0496114_0050029
328 Ga0496117_0051681
329 Ga0496119_0031874
330 Ga0496120_0016172
331 Ga0496121_0026549
332 Ga0496123_0022901
333 Ga0496126_0007549
334 Ga0501034_0004456
335 Ga0501034_0053438
336 Ga0501047_0192794
337 Ga0501067_0022348
338 Ga0501070_0081894
339 Ga0501072_0011130
340 Ga0501073_0001510
341 Ga0501073_0029311
342 Ga0501074_0065919
343 Ga0501080_0025142
344 Ga0501083_0053797
345 nmdc:mga06z11_44985_c1
346 nmdc:mga04h51_7508_c1
347 Ga0500643_000248
348 Ga0500595_019796
349 Ga0500642_0023521
350 Ga0500616_0036371
351 Ga0501082_0092081
352 Ga0466962_0035590
353 2883294105
354 2883357355

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00294

PfkB

pfkB family carbohydrate kinase

32

330

0.89

PF01467

CTP_transf_like

Cytidylyltransferase-like

373

502

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
4e84-assembly1.cif.gz_A crystal structure of burkholderia cenocepacia hlda 0.9444 5 314
5xf2-assembly1.cif.gz_A crystal structure of semet-hldc from burkholderia pseudomallei 0.9124 332 469
4e84-assembly1.cif.gz_A crystal structure of burkholderia cenocepacia hlda 0.9124 5 314
7vtf-assembly1.cif.gz_A cytidine bound structure of pseudouridine kinase (puki) from escherichia coli strain b 0.881 11 308
7w93-assembly1.cif.gz_A-2 crystal structure of e.coli pseudouridine kinase psuk complexed with n1-methyl-pseudouridine 0.8804 10 308
ID Description Score Start End Superfamily
af_P76658_320_476_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9599 332 483 3.40.50.620
af_P76658_320_476_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9245 332 483 3.40.50.620
af_P76658_2_309_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9131 7 314 3.40.1190.20
af_P76658_2_309_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8935 7 314 3.40.1190.20
1cozA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8802 351 480 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A3D5UB32-F1-model_v4 Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 0.9913 332 439 GO:0009058
GO:0016301
AF-A0A3D5R541-F1-model_v4 Cytidyltransferase-like domain-containing protein 0.9855 332 460 GO:0003824
GO:0009058
AF-A0A6G3UGW6-F1-model_v4 Adenylyltransferase/cytidyltransferase family protein 0.9803 346 445 GO:0009058
GO:0016779
AF-A0A382B6P7-F1-model_v4 Cytidyltransferase-like domain-containing protein 0.9796 332 446 GO:0003824
GO:0009058
AF-A0A7C3V3C2-F1-model_v4 Cytidyltransferase-like domain-containing protein 0.9778 332 427 GO:0003824
GO:0009058

Map