F273610

General Info

Members Datasets Scaffolds Average Seq Length
179 108 357 205

Family's Representative Sequence

Representative Sequence 3300006195|Ga0075366_10319311|Ga0075366_103193112
Length 214
Sequence MITLKSKVMFSHLKNIETAFKHIRQFSLFLIIGNVLTMGFCIYKTTQVVNAAQNRVHILYNGKLLEASASDRKSNLPVELRDHIRTFHEYFFDLSPDDKAIQANVNKALYLADESAKREYDNLREAGYYNNLISANISQEIHVDSTRLNGNQWPYNFTCYATEKLVRSSGTVYRKLVTQGEIRDLAEQSDNNPHGFLIQHWEVLANRDTTIINK

Samples

Sample ID Description Type Environment
1 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
18 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
19 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
33 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
39 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
40 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
41 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
43 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
44 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
45 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
62 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
63 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
64 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
68 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
76 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
77 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
78 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
79 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
80 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
81 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
82 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
83 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
84 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
85 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
88 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
89 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
90 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
91 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
92 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
93 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
94 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
95 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
96 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
97 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
98 2738541283 Pedobacter sp. OK701 Isolate Unclassified
99 2738543023 Pedobacter sp. OK628 Isolate Unclassified
100 2739367663 Pedobacter sp. YR510 Isolate Unclassified
101 2818991437 Pedobacter terrae 518 Isolate Unclassified
102 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
103 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
104 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
105 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
106 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
107 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
108 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.62
Metatranscriptomes 0
Isolates 8.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.41
Nodule 0
Rhizoplane 1.68
Rhizosphere 69.27
Stem 0
Stem Tuber 0
Unclassified 8.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075366_10319311 3300006195 Bacteria 951
2 SwRhRL2b_contig_1596339 2162886007 Bacteria 98699
3 SwRhRL2b_contig_2418591 2162886007 Bacteria 39679
4 JGI24736J21556_1008940 3300001904 Bacteria 1659
5 JGI24737J22298_10003187 3300001990 Bacteria 5819
6 JGI24735J21928_10000005 3300002067 Bacteria 356755
7 JGI25162J39368_1000672 3300002737 Bacteria 24058
8 rootH1_10048761 3300003316 Bacteria 1448
9 rootH1_10065506 3300003316 Bacteria 2696
10 rootH2_10000153 3300003320 Bacteria 80161
11 rootH2_10001891 3300003320 Bacteria 464318
12 rootH2_10004159 3300003320 Bacteria 10338
13 rootL2_10290250 3300003322 Unclassified 2882
14 rootH1_10000566 3300003316 Bacteria 33162
15 rootH1_10000566 3300003323 Bacteria 205679
16 rootH1_10236532 3300003323 Bacteria 4112
17 rootH1_10363444 3300003323 Bacteria 3601
18 Ga0055536_1000008 3300003781 Bacteria 335729
19 Ga0055530_10000052 3300003791 Bacteria 104501
20 Ga0055530_10002222 3300003791 Bacteria 12807
21 Ga0055531_10022927 3300003794 Bacteria 2361
22 Ga0065714_10015329 3300005288 Bacteria 2862
23 Ga0065714_10064434 3300005288 Bacteria 130989
24 Ga0065714_10064854 3300005288 Bacteria 16979
25 Ga0065714_10071892 3300005288 Bacteria 3473
26 Ga0065714_10151514 3300005288 Bacteria 1103
27 Ga0065714_10236964 3300005288 Bacteria 803
28 Ga0065704_10070168 3300005289 Bacteria 171820
29 Ga0070683_100182975 3300005329 Bacteria 1989
30 Ga0070680_100061712 3300005336 Unclassified 3069
31 Ga0070660_100243853 3300005339 Bacteria 1464
32 Ga0070711_100528068 3300005439 Bacteria 976
33 Ga0070681_10057632 3300005458 Unclassified 3865
34 Ga0068853_100135348 3300005539 Bacteria 2208
35 Ga0070672_100398894 3300005543 Unclassified 1179
36 Ga0070665_100000205 3300005548 Bacteria 103515
37 Ga0068855_100004958 3300005563 Bacteria 16236
38 Ga0068855_100011013 3300005563 Bacteria 10917
39 Ga0068855_100062426 3300005563 Unclassified 4350
40 Ga0068857_100021890 3300005577 Bacteria 5626
41 Ga0068870_10034684 3300005840 Unclassified 2583
42 Ga0075366_10000054 3300006195 Bacteria 41332
43 Ga0075366_10025209 3300006195 Bacteria 3472
44 Ga0075366_10171533 3300006195 Bacteria 1316
45 Ga0097621_100029751 3300006237 Plasmid 4317
46 Ga0068871_100005172 3300006358 Bacteria 9122
47 Ga0105240_10298944 3300009093 Bacteria 1842
48 Ga0105240_10575139 3300009093 Bacteria 1243
49 Ga0105240_10814627 3300009093 Bacteria 1010
50 Ga0105237_10000125 3300009545 Bacteria 107351
51 Ga0105237_10000177 3300009545 Bacteria 90045
52 Ga0105237_10000496 3300009545 Bacteria 55702
53 Ga0105239_10000006 3300010375 Bacteria 442319
54 Ga0105239_10292723 3300010375 Unclassified 1833
55 Ga0157371_10001798 3300013102 Bacteria 21688
56 Ga0157371_10003296 3300013102 Bacteria 14776
57 Ga0157371_10027226 3300013102 Bacteria 4148
58 Ga0157371_10030167 3300013102 Unclassified 3913
59 Ga0157371_10046325 3300013102 Bacteria 3093
60 Ga0157370_10000072 3300013104 Bacteria 110176
61 Ga0157370_10000205 3300013104 Bacteria 74877
62 Ga0157370_10000314 3300013104 Bacteria 60800
63 Ga0157370_10002245 3300013104 Bacteria 23478
64 Ga0157370_10003516 3300013104 Bacteria 18363
65 Ga0157370_10010782 3300013104 Bacteria 9610
66 Ga0157370_10481867 3300013104 Bacteria 1140
67 Ga0157369_10000419 3300013105 Bacteria 56158
68 Ga0157369_10000742 3300013105 Bacteria 42082
69 Ga0157369_10086660 3300013105 Bacteria 3344
70 Ga0157369_10104279 3300013105 Bacteria 3020
71 Ga0157369_10156697 3300013105 Unclassified 2405
72 Ga0157374_10416541 3300013296 Bacteria 1342
73 Ga0157378_10046280 3300013297 Bacteria 3867
74 Ga0163162_10000208 3300013306 Bacteria 54338
75 Ga0163162_10003398 3300013306 Bacteria 15200
76 Ga0163162_10008725 3300013306 Bacteria 9864
77 Ga0163162_10040083 3300013306 Bacteria 4682
78 Ga0157372_10000326 3300013307 Bacteria 52158
79 Ga0157372_10014772 3300013307 Bacteria 8358
80 Ga0157372_10348311 3300013307 Bacteria 1726
81 Ga0157372_10477853 3300013307 Bacteria 1453
82 Ga0182008_10000006 3300014497 Bacteria 378521
83 Ga0182008_10002017 3300014497 Bacteria 13021
84 Ga0183373_1010 3300015682 Bacteria 196982
85 Ga0209563_116973 3300025230 Bacteria 883
86 Ga0209437_100024 3300025233 Bacteria 592878
87 Ga0209026_1000254 3300025250 Bacteria 66928
88 Ga0209026_1006625 3300025250 Bacteria 2796
89 Ga0209026_1011994 3300025250 Bacteria 1529
90 Ga0209026_1022937 3300025250 Bacteria 953
91 Ga0209233_1000604 3300025261 Bacteria 18532
92 Ga0209676_1000042 3300025292 Bacteria 424130
93 Ga0209050_1000035 3300025298 Bacteria 424005
94 Ga0209050_1000125 3300025298 Bacteria 189641
95 Ga0209257_1000994 3300025304 Bacteria 38435
96 Ga0207647_10000140 3300025904 Bacteria 57457
97 Ga0207705_10053605 3300025909 Bacteria 2906
98 Ga0207707_10028693 3300025912 Unclassified 4863
99 Ga0207695_10584067 3300025913 Bacteria 998
100 Ga0207671_10000112 3300025914 Bacteria 125310
101 Ga0207671_10000286 3300025914 Bacteria 74604
102 Ga0207671_10004430 3300025914 Bacteria 13448
103 Ga0207660_10047827 3300025917 Plasmid 3026
104 Ga0207694_10504018 3300025924 Unclassified 1014
105 Ga0207694_10572774 3300025924 Bacteria 949
106 Ga0207667_10003518 3300025949 Bacteria 19366
107 Ga0207667_10022554 3300025949 Bacteria 6951
108 Ga0207667_10098533 3300025949 Bacteria 3017
109 Ga0207639_10520200 3300026041 Bacteria 1089
110 Ga0207639_10954016 3300026041 Bacteria 803
111 Ga0207674_10012462 3300026116 Bacteria 9501
112 Ga0207683_10544927 3300026121 Unclassified 1072
113 Ga0268266_10000333 3300028379 Bacteria 74168
114 Ga0307515_10000114 3300028794 Bacteria 194024
115 Ga0316181_1140049 3300030744 Bacteria 1409
116 Ga0265327_10157409 3300031251 Bacteria 1052
117 Ga0307408_100000573 3300031548 Bacteria 31741
118 Ga0307516_10214557 3300031730 Bacteria 1637
119 Ga0307407_10000040 3300031903 Bacteria 66966
120 Ga0307414_10540153 3300032004 Bacteria 1037
121 Ga0307507_10000141 3300033179 Bacteria 125001
122 Ga0307507_10001092 3300033179 Bacteria 60190
123 Ga0307507_10001179 3300033179 Bacteria 58154
124 Ga0307510_10039121 3300033180 Bacteria 5231
125 Ga0395899_0000001 3300037312 Bacteria 1750322
126 Ga0395899_0000002 3300037312 Bacteria 1324310
127 Ga0395899_0032657 3300037312 Bacteria 3911
128 Ga0395900_0002909 3300037418 Bacteria 18659
129 Ga0395898_0027949 3300037466 Bacteria 5657
130 Ga0395901_0062519 3300038443 Bacteria 3874
131 Ga0451807_0826145 3300041486 Bacteria 606
132 Ga0466966_0000657 3300044684 Bacteria 22017
133 Ga0466961_0056271 3300044693 Bacteria 2506
134 Ga0495650_0000013 3300046471 Bacteria 611135
135 Ga0495585_0015577 3300046492 Bacteria 4418
136 Ga0495585_0092338 3300046492 Bacteria 1629
137 Ga0495596_0052576 3300046500 Bacteria 1595
138 Ga0495606_0023661 3300046507 Bacteria 4445
139 Ga0495606_0036299 3300046507 Bacteria 3358
140 Ga0495606_0144983 3300046507 Bacteria 1399
141 Ga0495648_0000542 3300046524 Bacteria 40768
142 Ga0495648_0001150 3300046524 Bacteria 26778
143 Ga0495648_0001429 3300046524 Bacteria 23367
144 Ga0495609_0002632 3300046538 Bacteria 10901
145 Ga0495633_0000167 3300046558 Bacteria 86373
146 Ga0495633_0001066 3300046558 Bacteria 22216
147 Ga0495625_0051921 3300046660 Bacteria 2937
148 Ga0495625_0151949 3300046660 Bacteria 1556
149 Ga0495625_0416693 3300046660 Bacteria 836
150 Ga0495589_0097181 3300046794 Bacteria 1427
151 Ga0495681_0103687 3300047470 Bacteria 1240
152 Ga0495686_0111688 3300047472 Bacteria 1638
153 Ga0496115_0077427 3300048918 Unclassified 2704
154 Ga0496122_0001002 3300048925 Bacteria 50067
155 Ga0495678_012579 3300049459 Bacteria 4009
156 Ga0501241_021716 3300049758 Bacteria 1184
157 nmdc:mga0k408_177_c1 3300050493 Bacteria 5356
158 nmdc:mga0k408_18128_c1 3300050493 Bacteria 3926
159 nmdc:mga0k408_91_c1 3300050493 Bacteria 42962
160 nmdc:mga07m45_485268_c1 3300050496 Bacteria 716
161 Ga0500569_178796 3300053109 Unclassified 720
162 Ga0500608_005267 3300053122 Bacteria 5118
163 Ga0500608_044990 3300053122 Unclassified 2120
164 Ga0500590_183676 3300053148 Bacteria 905
165 2586207988 2585427687 Bacteria 5544917
166 2599476702 2599185184 Bacteria 6430550
167 2738757326 2738541283 Bacteria 7222293
168 2739304763 2738543023 Bacteria 6767879
169 2739644474 2739367663 Bacteria 5040914
170 2819549234 2818991437 Bacteria 5805520
171 2849287001 2849281842 Bacteria 6065644
172 2884935330 2884933994 Bacteria 4535041
173 2884936832 2884933994 Bacteria 4535041
174 2902051855 2902048731 Bacteria 4976191
175 2928081497 2928078545 Bacteria 6534839
176 2928148228 2928147474 Bacteria 6512076
177 2932083123 2932082852 Bacteria 6563563
178 2977232226 2977232053 Bacteria 5485925
179 2977235468 2977232053 Bacteria 5485925
180 Ga0075366_10319311
181 SwRhRL2b_contig_1596339
182 SwRhRL2b_contig_2418591
183 JGI24736J21556_1008940
184 JGI24737J22298_10003187
185 JGI24735J21928_10000005
186 JGI25162J39368_1000672
187 rootH1_10048761
188 rootH1_10065506
189 rootH2_10000153
190 rootH2_10001891
191 rootH2_10004159
192 rootL2_10290250
193 rootH1_10000566
194 rootH1_10236532
195 rootH1_10363444
196 Ga0055536_1000008
197 Ga0055530_10000052
198 Ga0055530_10002222
199 Ga0055531_10022927
200 Ga0065714_10015329
201 Ga0065714_10064434
202 Ga0065714_10064854
203 Ga0065714_10071892
204 Ga0065714_10151514
205 Ga0065714_10236964
206 Ga0065704_10070168
207 Ga0070683_100182975
208 Ga0070680_100061712
209 Ga0070660_100243853
210 Ga0070711_100528068
211 Ga0070681_10057632
212 Ga0068853_100135348
213 Ga0070672_100398894
214 Ga0070665_100000205
215 Ga0068855_100004958
216 Ga0068855_100011013
217 Ga0068855_100062426
218 Ga0068857_100021890
219 Ga0068870_10034684
220 Ga0075366_10000054
221 Ga0075366_10025209
222 Ga0075366_10171533
223 Ga0097621_100029751
224 Ga0068871_100005172
225 Ga0105240_10298944
226 Ga0105240_10575139
227 Ga0105240_10814627
228 Ga0105237_10000125
229 Ga0105237_10000177
230 Ga0105237_10000496
231 Ga0105239_10000006
232 Ga0105239_10292723
233 Ga0157371_10001798
234 Ga0157371_10003296
235 Ga0157371_10027226
236 Ga0157371_10030167
237 Ga0157371_10046325
238 Ga0157370_10000072
239 Ga0157370_10000205
240 Ga0157370_10000314
241 Ga0157370_10002245
242 Ga0157370_10003516
243 Ga0157370_10010782
244 Ga0157370_10481867
245 Ga0157369_10000419
246 Ga0157369_10000742
247 Ga0157369_10086660
248 Ga0157369_10104279
249 Ga0157369_10156697
250 Ga0157374_10416541
251 Ga0157378_10046280
252 Ga0163162_10000208
253 Ga0163162_10003398
254 Ga0163162_10008725
255 Ga0163162_10040083
256 Ga0157372_10000326
257 Ga0157372_10014772
258 Ga0157372_10348311
259 Ga0157372_10477853
260 Ga0182008_10000006
261 Ga0182008_10002017
262 Ga0183373_1010
263 Ga0209563_116973
264 Ga0209437_100024
265 Ga0209026_1000254
266 Ga0209026_1006625
267 Ga0209026_1011994
268 Ga0209026_1022937
269 Ga0209233_1000604
270 Ga0209676_1000042
271 Ga0209050_1000035
272 Ga0209050_1000125
273 Ga0209257_1000994
274 Ga0207647_10000140
275 Ga0207705_10053605
276 Ga0207707_10028693
277 Ga0207695_10584067
278 Ga0207671_10000112
279 Ga0207671_10000286
280 Ga0207671_10004430
281 Ga0207660_10047827
282 Ga0207694_10504018
283 Ga0207694_10572774
284 Ga0207667_10003518
285 Ga0207667_10022554
286 Ga0207667_10098533
287 Ga0207639_10520200
288 Ga0207639_10954016
289 Ga0207674_10012462
290 Ga0207683_10544927
291 Ga0268266_10000333
292 Ga0307515_10000114
293 Ga0316181_1140049
294 Ga0265327_10157409
295 Ga0307408_100000573
296 Ga0307516_10214557
297 Ga0307407_10000040
298 Ga0307414_10540153
299 Ga0307507_10000141
300 Ga0307507_10001092
301 Ga0307507_10001179
302 Ga0307510_10039121
303 Ga0395899_0000001
304 Ga0395899_0000002
305 Ga0395899_0032657
306 Ga0395900_0002909
307 Ga0395898_0027949
308 Ga0395901_0062519
309 Ga0451807_0826145
310 Ga0466966_0000657
311 Ga0466961_0056271
312 Ga0495650_0000013
313 Ga0495585_0015577
314 Ga0495585_0092338
315 Ga0495596_0052576
316 Ga0495606_0023661
317 Ga0495606_0036299
318 Ga0495606_0144983
319 Ga0495648_0000542
320 Ga0495648_0001150
321 Ga0495648_0001429
322 Ga0495609_0002632
323 Ga0495633_0000167
324 Ga0495633_0001066
325 Ga0495625_0051921
326 Ga0495625_0151949
327 Ga0495625_0416693
328 Ga0495589_0097181
329 Ga0495681_0103687
330 Ga0495686_0111688
331 Ga0496115_0077427
332 Ga0496122_0001002
333 Ga0495678_012579
334 Ga0501241_021716
335 nmdc:mga0k408_177_c1
336 nmdc:mga0k408_18128_c1
337 nmdc:mga0k408_91_c1
338 nmdc:mga07m45_485268_c1
339 Ga0500569_178796
340 Ga0500608_005267
341 Ga0500608_044990
342 Ga0500590_183676
343 2586207988
344 2599476702
345 2738757326
346 2739304763
347 2739644474
348 2819549234
349 2849287001
350 2884935330
351 2884936832
352 2902051855
353 2928081497
354 2928148228
355 2932083123
356 2977232226
357 2977235468

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xb3-assembly1.cif.gz_A the structure of cyanobacterial psbp 0.7643 131 173
5wip-assembly1.cif.gz_D trae protein in complex with 2-(2-furyl)isonicotinic acid 0.7577 73 196
3wz4-assembly5.cif.gz_E structure of the periplasmic domain of doti (crystal form i) 0.7557 72 196
2bhm-assembly2.cif.gz_D crystal structure of virb8 from brucella suis 0.7514 70 196
5wip-assembly2.cif.gz_C trae protein in complex with 2-(2-furyl)isonicotinic acid 0.7468 73 201
ID Description Score Start End Superfamily
af_Q54DS7_301_401_2.60.40.290 Mainly Beta;Sandwich;Immunoglobulin-like; 0.7828 129 159 2.60.40.290
af_I6YGA5_49_159_3.10.450.230 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.7804 79 194 3.10.450.230
af_O53973_67_188_3.10.450.50 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,; 0.7783 74 194 3.10.450.50
2xb3A00 Alpha Beta;3-Layer(aba) Sandwich;Protein Transport Mog1p; Chain A;Mog1/PsbP, alpha/beta/alpha sandwich 0.7643 131 173 3.40.1000.10
af_I6YGA5_49_159_3.10.450.230 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;VirB8 protein 0.7622 79 194 3.10.450.230
ID Description Score Start End GO Terms
AF-K6A5S6-F1-model_v4 Conjugative transposon TraK protein 0.9936 65 202
AF-A0A015RZG8-F1-model_v4 deleted 0.9936 71 202
AF-A0A519YMU2-F1-model_v4 Conjugative transposon protein TraK 0.9933 71 202
AF-A0A2R7JQB4-F1-model_v4 Conjugative transposon protein TraK 0.9868 86 202
AF-A0A6L3IJB7-F1-model_v4 Conjugative transposon protein TraK 0.9846 65 202

Map