F274682

General Info

Members Datasets Scaffolds Average Seq Length
179 148 359 1459

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332280|2817414366
Length 1527
Sequence MKGVGFGALKLDFYNSMYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLVEHQDYLVKPEGFNIPYDAERIHGISTELAEADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVDSTMASIPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHEYLFNVPFAEAHNATADVEATTRCFLELVRREVFTKEELDVPKEYFKDFQERNPEPFKLIGLKHINLKAASDKIREQLKALAAEGQQNVVSEEDKADFKAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHNKGASAKNKALVEAGEEPTETEIKPIVGCEFNICDNHLDKSKKDNGYQVVLLAKNKAGYHNLAKMASIAYTDGFYYVPRIDRTIVEQYKGDIMVLSGNLYGEIPSKILNIGENQAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSKKHDVKLIATNNTYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKKLFADLPEAIINIQEIIDKVEGYSLYRDVLLPKFEIPDEFVDPEDEKDNGVRGENAYLRHLTMEGAKRRYGEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMEYVINKYGQKQVAQIITYGKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEIKKALRSDEFDNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELNPDTFPIDDEETYALFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEIKYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVEQAAAKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVSFFMEECKRMGLQVLGPCVNESYYKFTVNDDYAVRFGMGAIKGVGAGAVETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGITFYEKAMRYGSKFQENENSSQVSLFGETSEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIYISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLMFAGIINNVQHRVAKNGKGWAAFNLEGYDESYEFKIFGEEYLKFRHFLIQNNFAFIKILIKDGWVNHDTGKKSDPRMQFVEIRQLQDILEAFAKKLIVLLNIKDLHPEFIHKLSHLFAENKGENSVTFEIMELEKIKRLVEVETPTDFEADDAVFEDENENEDAALESTKVQEVNEVEEIKVVTKLTMPSRRVKVRISTELLQELEKMQINFKLN

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
9 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
15 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
18 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
19 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
20 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
21 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
22 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
23 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
24 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
25 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
26 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
27 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
28 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
31 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
32 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
34 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
35 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
40 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
41 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
42 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
43 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
44 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
47 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
48 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
49 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
50 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
51 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
52 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
53 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
54 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
55 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
56 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
57 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
58 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
59 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
60 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
61 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
62 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
63 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
64 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
65 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
66 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
67 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
68 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
69 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
70 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
71 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
72 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
73 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
74 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
75 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
76 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
77 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
78 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
79 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
80 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
81 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
82 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
83 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
84 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
85 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
86 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
87 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
88 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
89 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
90 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
91 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
92 2738541283 Pedobacter sp. OK701 Isolate Unclassified
93 2738541284 Pedobacter sp. YR016 Isolate Unclassified
94 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
95 2738541302 Pedobacter sp. CF074 Isolate Unclassified
96 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
97 2738543023 Pedobacter sp. OK628 Isolate Unclassified
98 2739367651 Pedobacter sp. OK291 Isolate Unclassified
99 2739367656 Pedobacter sp. CF523 Isolate Unclassified
100 2739367663 Pedobacter sp. YR510 Isolate Unclassified
101 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
102 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
103 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
104 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
105 2818991437 Pedobacter terrae 518 Isolate Unclassified
106 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
107 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
108 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
109 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
110 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
111 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
112 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
113 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
114 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
115 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
116 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
117 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
118 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
119 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
120 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
121 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
122 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
123 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
124 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
125 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
126 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
127 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
128 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
129 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
130 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
131 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
132 2919509842 Flavobacterium arsenatis 3773 Isolate Unclassified
133 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
134 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
135 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
136 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
137 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
138 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
139 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
140 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
141 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
142 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
143 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
144 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
145 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
146 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere
147 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
148 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 62.57
Metatranscriptomes 0
Isolates 37.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.73
Nodule 1.12
Rhizoplane 0
Rhizosphere 62.01
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3265989 2162886007 Bacteria 9688
2 JGI25150J39212_1000001 3300002774 Bacteria 1318726
3 JGI25151J46595_10000001 3300003187 Bacteria 887211
4 JGI25153J46596_10000001 3300003215 Bacteria 748985
5 rootH2_10046025 3300003320 Bacteria 22595
6 rootL2_10020637 3300003322 Bacteria 9512
7 rootH1_10003093 3300003316 Bacteria 4828
8 rootH1_10003093 3300003323 Bacteria 41197
9 rootH1_10010324 3300003323 Bacteria 9076
10 Ga0055536_1000001 3300003781 Bacteria 630663
11 Ga0055530_10000347 3300003791 Bacteria 41846
12 Ga0055531_10000906 3300003794 Bacteria 24099
13 Ga0065165_1002065 3300005262 Bacteria 18554
14 Ga0065714_10002409 3300005288 Bacteria 19008
15 Ga0065714_10002830 3300005288 Bacteria 20493
16 Ga0065714_10068012 3300005288 Bacteria 5009
17 Ga0065714_10068505 3300005288 Bacteria 4693
18 Ga0065704_10070578 3300005289 Bacteria 20011
19 Ga0065704_10074022 3300005289 Bacteria 6596
20 Ga0079104_1000307 3300006946 Bacteria 61994
21 Ga0105244_10000025 3300009036 Bacteria 217877
22 Ga0111539_10008881 3300009094 Bacteria 12726
23 Ga0105243_10000141 3300009148 Bacteria 82657
24 Ga0105237_10000578 3300009545 Bacteria 51257
25 Ga0157373_10000003 3300013100 Bacteria 454601
26 Ga0157373_10001189 3300013100 Bacteria 19925
27 Ga0157371_10000016 3300013102 Bacteria 330495
28 Ga0157371_10000689 3300013102 Bacteria 39887
29 Ga0157371_10001880 3300013102 Bacteria 21002
30 Ga0157371_10002114 3300013102 Bacteria 19341
31 Ga0157370_10000676 3300013104 Bacteria 42494
32 Ga0157370_10002460 3300013104 Bacteria 22346
33 Ga0157370_10003457 3300013104 Bacteria 18521
34 Ga0157370_10004760 3300013104 Bacteria 15446
35 Ga0157369_10000478 3300013105 Bacteria 53035
36 Ga0163162_10000358 3300013306 Bacteria 41309
37 Ga0163162_10034866 3300013306 Bacteria 5009
38 Ga0157380_10005339 3300014326 Bacteria 8977
39 Ga0182008_10000024 3300014497 Bacteria 199978
40 Ga0182008_10000602 3300014497 Bacteria 26447
41 Ga0182006_1000364 3300015261 Bacteria 37793
42 Ga0182006_1000373 3300015261 Bacteria 37119
43 Ga0182006_1000378 3300015261 Bacteria 37025
44 Ga0182007_10000003 3300015262 Bacteria 548244
45 Ga0182007_10005525 3300015262 Bacteria 5537
46 Ga0183373_1001 3300015682 Bacteria 1410374
47 Ga0163161_10000074 3300017792 Bacteria 101784
48 Ga0163161_10000123 3300017792 Bacteria 72760
49 Ga0163161_10000641 3300017792 Bacteria 27918
50 Ga0163161_10000658 3300017792 Bacteria 27592
51 Ga0207425_1000002 3300025245 Bacteria 1362590
52 Ga0209129_1000002 3300025258 Bacteria 1359086
53 Ga0209676_1000008 3300025292 Bacteria 991778
54 Ga0209025_1000004 3300025294 Bacteria 1361782
55 Ga0209758_1000006 3300025297 Bacteria 1359562
56 Ga0209050_1000045 3300025298 Bacteria 388022
57 Ga0209257_1000006 3300025304 Bacteria 1570111
58 Ga0207655_1000003 3300025728 Bacteria 1081376
59 Ga0207709_10000072 3300025935 Bacteria 178084
60 Ga0209281_1000115 3300027111 Bacteria 210393
61 Ga0307515_10000069 3300028794 Bacteria 240743
62 Ga0316183_1175000 3300030742 Bacteria 46866
63 Ga0307408_100000141 3300031548 Bacteria 80201
64 Ga0307408_100000510 3300031548 Bacteria 33609
65 Ga0307405_10000003 3300031731 Bacteria 569064
66 Ga0307405_10000004 3300031731 Bacteria 444977
67 Ga0307413_10000149 3300031824 Bacteria 18939
68 Ga0307406_10000011 3300031901 Bacteria 112730
69 Ga0307407_10000030 3300031903 Bacteria 97416
70 Ga0307407_10000238 3300031903 Bacteria 16168
71 Ga0307412_10000065 3300031911 Bacteria 122279
72 Ga0307416_100000175 3300032002 Bacteria 35927
73 Ga0307416_100002028 3300032002 Bacteria 11392
74 Ga0307414_10000014 3300032004 Bacteria 302974
75 Ga0307411_10000003 3300032005 Bacteria 477556
76 Ga0307415_100005106 3300032126 Bacteria 6918
77 Ga0395899_0000006 3300037312 Bacteria 666341
78 Ga0395905_0001131 3300037471 Bacteria 33375
79 Ga0395901_0001565 3300038443 Bacteria 23716
80 Ga0400490_45660 3300038726 Bacteria 57177
81 Ga0451577_0002813 3300042876 Bacteria 20055
82 Ga0453684_0001740 3300044712 Bacteria 58254
83 Ga0453684_0006319 3300044712 Bacteria 22619
84 Ga0453684_0027908 3300044712 Bacteria 8075
85 Ga0451576_0005698 3300045051 Bacteria 15537
86 Ga0495627_002895 3300046453 Bacteria 7904
87 Ga0495638_0000006 3300046460 Bacteria 668846
88 Ga0495607_0010868 3300046501 Bacteria 6091
89 Ga0495610_0001661 3300046512 Bacteria 19543
90 Ga0495610_0002433 3300046512 Bacteria 15661
91 Ga0495643_0000378 3300046522 Bacteria 59359
92 Ga0496116_0000002 3300048919 Bacteria 920291
93 Ga0496116_0002559 3300048919 Bacteria 18985
94 Ga0496117_0000407 3300048920 Bacteria 72427
95 Ga0496118_0013002 3300048921 Bacteria 7920
96 Ga0496123_0002108 3300048926 Bacteria 25536
97 Ga0496125_0000007 3300048928 Bacteria 715355
98 Ga0496125_0000072 3300048928 Bacteria 238328
99 Ga0496126_0001788 3300048929 Bacteria 31699
100 Ga0501249_000048 3300049679 Bacteria 50617
101 Ga0501241_000353 3300049758 Bacteria 10084
102 Ga0501264_000096 3300049761 Bacteria 13033
103 Ga0501266_000001 3300049763 Bacteria 562004
104 Ga0501280_000441 3300049776 Bacteria 9911
105 Ga0501035_0008361 3300049822 Bacteria 9634
106 nmdc:mga08y16_25761_c1 3300050511 Bacteria 6206
107 Ga0500651_0000825 3300053093 Bacteria 15186
108 Ga0500641_0000004 3300053096 Bacteria 263911
109 Ga0500658_0000001 3300053134 Bacteria 592738
110 Ga0500616_0000065 3300053153 Bacteria 239287
111 Ga0500622_0000018 3300053156 Bacteria 307548
112 Ga0500622_0000076 3300053156 Bacteria 108680
113 Ga0500622_0001403 3300053156 Bacteria 19417
114 2817414366 2816332280 Bacteria 5109718
115 2513235313 2513020052 Bacteria 5120511
116 2520880715 2519899754 Bacteria 5336938
117 2586207721 2585427687 Bacteria 5544917
118 2644011881 2643221600 Bacteria 5530138
119 2644371507 2643221667 Bacteria 5627472
120 2644641159 2643221716 Bacteria 4986332
121 2644682714 2643221725 Bacteria 5087956
122 2722730253 2721755487 Bacteria 6357185
123 2738733639 2738541279 Bacteria 6149495
124 2738755442 2738541283 Bacteria 7222293
125 2738763496 2738541284 Bacteria 5199923
126 2738766404 2738541285 Bacteria 6150075
127 2738851887 2738541302 Bacteria 5944758
128 2739215220 2738543007 Bacteria 6149845
129 2739303620 2738543023 Bacteria 6767879
130 2739590780 2739367651 Bacteria 6359826
131 2739617887 2739367656 Bacteria 5152243
132 2739644164 2739367663 Bacteria 5040914
133 2740000148 2739367857 Bacteria 5433684
134 2740004964 2739367858 Bacteria 5432813
135 2776615067 2775506987 Bacteria 5373360
136 2802651497 2802428842 Bacteria 4926114
137 2819546441 2818991437 Bacteria 5805520
138 2833641257 2833640130 Bacteria 4858325
139 2842725137 2842722452 Bacteria 6263924
140 2842906924 2842903701 Bacteria 6986368
141 2842914303 2842909656 Bacteria 6185908
142 2849286072 2849281842 Bacteria 6065644
143 2852629359 2852627209 Bacteria 5896285
144 2857615646 2857613821 Bacteria 4917088
145 2857621639 2857618242 Bacteria 5635925
146 2857629834 2857627736 Bacteria 5625397
147 2881249061 2881247448 Bacteria 3717788
148 2881361658 2881359912 Bacteria 4935907
149 2884636203 2884634485 Bacteria 3928637
150 2890738669 2890737413 Bacteria 4269751
151 2890806493 2890804823 Bacteria 3717572
152 2896317806 2896317667 Bacteria 4606601
153 2896346446 2896344016 Bacteria 3811746
154 2898715719 2898713307 Bacteria 4110805
155 2902051256 2902048731 Bacteria 4976191
156 2903895443 2903895155 Bacteria 5258610
157 2904423676 2904419702 Bacteria 5166287
158 2904448753 2904445276 Bacteria 5310396
159 2904558014 2904555929 Bacteria 5218588
160 2904783896 2904780799 Bacteria 5840761
161 2919181834 2919177583 Bacteria 5641607
162 2919190299 2919186247 Bacteria 6244071
163 2919192645 2919191525 Bacteria 5765973
164 2919510453 2919509842 Bacteria 4104664
165 2919683948 2919683626 Bacteria 5534354
166 2919696172 2919692658 Bacteria 5943958
167 2929151520 2929150217 Bacteria 5462483
168 2939668580 2939664404 Bacteria 6364494
169 2946002065 2945997725 Bacteria 6404843
170 2954018960 2954016120 Bacteria 6446024
171 2958459791 2958458903 Bacteria 5301041
172 2958515008 2958512119 Bacteria 4528530
173 2965321728 2965320100 Bacteria 3975600
174 3003235433 3003233435 Bacteria 4458031
175 8036738978 8036736890 Bacteria 2944828
176 8054309258 8054307821 Bacteria 5212224
177 8055419868 8055419101 Bacteria 5289643
178 8055591819 8055588893 Bacteria 3619545
179 8055596138 8055592153 Bacteria 5961247
180 8056444398 8056440228 Bacteria 4946504
181 SwRhRL2b_contig_3265989
182 JGI25150J39212_1000001
183 JGI25151J46595_10000001
184 JGI25153J46596_10000001
185 rootH2_10046025
186 rootL2_10020637
187 rootH1_10003093
188 rootH1_10010324
189 Ga0055536_1000001
190 Ga0055530_10000347
191 Ga0055531_10000906
192 Ga0065165_1002065
193 Ga0065714_10002409
194 Ga0065714_10002830
195 Ga0065714_10068012
196 Ga0065714_10068505
197 Ga0065704_10070578
198 Ga0065704_10074022
199 Ga0079104_1000307
200 Ga0105244_10000025
201 Ga0111539_10008881
202 Ga0105243_10000141
203 Ga0105237_10000578
204 Ga0157373_10000003
205 Ga0157373_10001189
206 Ga0157371_10000016
207 Ga0157371_10000689
208 Ga0157371_10001880
209 Ga0157371_10002114
210 Ga0157370_10000676
211 Ga0157370_10002460
212 Ga0157370_10003457
213 Ga0157370_10004760
214 Ga0157369_10000478
215 Ga0163162_10000358
216 Ga0163162_10034866
217 Ga0157380_10005339
218 Ga0182008_10000024
219 Ga0182008_10000602
220 Ga0182006_1000364
221 Ga0182006_1000373
222 Ga0182006_1000378
223 Ga0182007_10000003
224 Ga0182007_10005525
225 Ga0183373_1001
226 Ga0163161_10000074
227 Ga0163161_10000123
228 Ga0163161_10000641
229 Ga0163161_10000658
230 Ga0207425_1000002
231 Ga0209129_1000002
232 Ga0209676_1000008
233 Ga0209025_1000004
234 Ga0209758_1000006
235 Ga0209050_1000045
236 Ga0209257_1000006
237 Ga0207655_1000003
238 Ga0207709_10000072
239 Ga0209281_1000115
240 Ga0307515_10000069
241 Ga0316183_1175000
242 Ga0307408_100000141
243 Ga0307408_100000510
244 Ga0307405_10000003
245 Ga0307405_10000004
246 Ga0307413_10000149
247 Ga0307406_10000011
248 Ga0307407_10000030
249 Ga0307407_10000238
250 Ga0307412_10000065
251 Ga0307416_100000175
252 Ga0307416_100002028
253 Ga0307414_10000014
254 Ga0307411_10000003
255 Ga0307415_100005106
256 Ga0395899_0000006
257 Ga0395905_0001131
258 Ga0395901_0001565
259 Ga0400490_45660
260 Ga0451577_0002813
261 Ga0453684_0001740
262 Ga0453684_0006319
263 Ga0453684_0027908
264 Ga0451576_0005698
265 Ga0495627_002895
266 Ga0495638_0000006
267 Ga0495607_0010868
268 Ga0495610_0001661
269 Ga0495610_0002433
270 Ga0495643_0000378
271 Ga0496116_0000002
272 Ga0496116_0002559
273 Ga0496117_0000407
274 Ga0496118_0013002
275 Ga0496123_0002108
276 Ga0496125_0000007
277 Ga0496125_0000072
278 Ga0496126_0001788
279 Ga0501249_000048
280 Ga0501241_000353
281 Ga0501264_000096
282 Ga0501266_000001
283 Ga0501280_000441
284 Ga0501035_0008361
285 nmdc:mga08y16_25761_c1
286 Ga0500651_0000825
287 Ga0500641_0000004
288 Ga0500658_0000001
289 Ga0500616_0000065
290 Ga0500622_0000018
291 Ga0500622_0000076
292 Ga0500622_0001403
293 2817414366
294 2513235313
295 2520880715
296 2586207721
297 2644011881
298 2644371507
299 2644641159
300 2644682714
301 2722730253
302 2738733639
303 2738755442
304 2738763496
305 2738766404
306 2738851887
307 2739215220
308 2739303620
309 2739590780
310 2739617887
311 2739644164
312 2740000148
313 2740004964
314 2776615067
315 2802651497
316 2819546441
317 2833641257
318 2842725137
319 2842906924
320 2842914303
321 2849286072
322 2852629359
323 2857615646
324 2857621639
325 2857629834
326 2881249061
327 2881361658
328 2884636203
329 2890738669
330 2890806493
331 2896317806
332 2896346446
333 2898715719
334 2902051256
335 2903895443
336 2904423676
337 2904448753
338 2904558014
339 2904783896
340 2919181834
341 2919190299
342 2919192645
343 2919510453
344 2919683948
345 2919696172
346 2929151520
347 2939668580
348 2946002065
349 2954018960
350 2958459791
351 2958515008
352 2965321728
353 3003235433
354 8036738978
355 8054309258
356 8055419868
357 8055591819
358 8055596138
359 8056444398

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17657

DNA_pol3_finger

Bacterial DNA polymerase III alpha subunit finger domain

883

1046

0.99

PF02811

PHP

PHP domain

279

468

0.95

PF07733

DNA_pol3_alpha

Bacterial DNA polymerase III alpha NTPase domain

604

880

0.93

PF14579

HHH_6

Helix-hairpin-helix motif

1119

1209

0.93

PF00929

RNase_T

Exonuclease

19

199

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
8h2f-assembly1.cif.gz_A crystal structure of dnaq domain in complex witn tmp of streptococcus thermophilus strain dgcc 7710 0.8675 2 192
8h2f-assembly1.cif.gz_A crystal structure of dnaq domain in complex witn tmp of streptococcus thermophilus strain dgcc 7710 0.8211 2 192
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8045 257 1184
4jom-assembly1.cif.gz_A structure of e. coli pol iii 3mphp mutant 0.8029 257 1184
2hnh-assembly1.cif.gz_A crystal structure of the catalytic alpha subunit of e. coli replicative dna polymerase iii 0.7999 257 1162
ID Description Score Start End Superfamily
2hqaA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9022 260 552 3.20.20.140
4iqjC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.902 259 552 3.20.20.140
4iqjC01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8892 259 552 3.20.20.140
2hqaA01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8792 260 552 3.20.20.140
af_P9WNT7_7_294_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8606 259 552 3.20.20.140
ID Description Score Start End GO Terms
AF-X1ABM3-F1-model_v4 PHP domain-containing protein 0.9758 407 547 GO:0006260
GO:0008408
AF-A0A150J7C0-F1-model_v4 DNA polymerase III subunit epsilon 0.9732 2 192 GO:0003676
GO:0008408
AF-A0A374TDZ8-F1-model_v4 Exonuclease domain-containing protein 0.9705 2 193 GO:0003676
GO:0004527
GO:0006259
AF-A0A3D4V0N0-F1-model_v4 DNA polymerase III subunit alpha 0.9616 1 152 GO:0003676
GO:0004527
GO:0006259
AF-A0A519W1L0-F1-model_v4 DNA polymerase III subunit alpha (EC 2.7.7.7) 0.9615 1 785 GO:0003676
GO:0006260
GO:0008408
GO:0016779

Map