F274688

General Info

Members Datasets Scaffolds Average Seq Length
179 140 122 348

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2846037992|2846038186
Length 410
Sequence HVKVGHRQTPHQTKPSSNELGFVHWRARSAKPPSNEPRQDHPAGLWRLCLRSYHERIDKENMMAKTLKAGLLGFGYAGSTFHAPLLLSVDGVELRAVASSKPERVHAMLPDVRVHASAEALLADPEIQLVVIATPNDSHYPLAEAALRAGKHVVVDKPFTLEAWQAKELIGLARSEQRLLSVFHNRRWDADFLAIKQLLGEGRLGRVVHFESHFDRYRPQVRQRWRESSAPGAGLWYDLGPHLLDQTLLLFGLPQAILLDKVGLRDGAQADDWFHAVLRYPDKRVILHGGTLVADVGPRFIVHGTEGSYSKYGLDPQEDALKEGVKPGGACWGRDEKPGRLLLTDRQPVAYAGPDGDYTRYYAGVRDAILRGAANPVPAVEAWQAMVLLELGRHSADQQSWQTVPASLAC

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
3 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
4 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
5 2537561728 Pectobacterium wasabiae CFBP 3304 Isolate Rhizoplane
6 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
7 2554235132 Pseudomonas aeruginosa PGPR2 Isolate Unclassified
8 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
9 2606217733 Pseudomonas aeruginosa NFHH01 Isolate Rhizoplane
10 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
11 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
12 2643221640 Caulobacter sp. Root342 Isolate Unclassified
13 2643221642 Caulobacter sp. Root343 Isolate Unclassified
14 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified
15 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
16 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
17 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
18 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
19 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
20 2791355048 Caulobacter flavus CGMCC1 15093 Isolate Rhizosphere
21 2808606414 Pantoea sp. SJZ147 Isolate Rhizosphere
22 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
23 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
24 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
25 2843744320 Caulobacter flavus RHGG3 Isolate Unclassified
26 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
27 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
28 2849560528 Caulobacter zeae 410 Isolate Unclassified
29 2849573788 Caulobacter endophyticus 774 Isolate Unclassified
30 2851153111 Caulobacter radicis 736 Isolate Unclassified
31 2855195626 Pectobacterium atrosepticum SS26 Isolate Stem Tuber
32 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
33 2858466076 Pectobacterium polaris SS28 Isolate Stem Tuber
34 2871272651 Pectobacterium carotovorum SS96 Isolate Stem Tuber
35 2871282230 Pectobacterium parmentieri SS90 Isolate Stem Tuber
36 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
37 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
38 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
39 2898329390 Caulobacter sp. 602-2 Isolate Rhizosphere
40 2900051742 Pectobacterium zantedeschiae 2M Isolate Stem Tuber
41 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
42 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
43 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
44 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
45 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
46 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
47 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
48 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
49 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
50 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
51 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
52 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
53 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
54 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
55 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
56 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
57 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
58 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere
59 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
60 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
61 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
62 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
63 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
64 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
65 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
66 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
67 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
68 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
69 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
70 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
71 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
72 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
73 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
74 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
75 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
76 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
77 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
78 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
79 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
82 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
88 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
89 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
90 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
91 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
96 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
97 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
98 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
99 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
100 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
101 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
102 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
103 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
104 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
105 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
106 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
107 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
108 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
109 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
110 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
111 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
112 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
113 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
114 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
117 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
118 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
119 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
120 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
123 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
124 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
125 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
126 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
127 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
128 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
129 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
130 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
131 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
132 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
135 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
136 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
137 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
138 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
139 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
140 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 67.6
Metatranscriptomes 0
Isolates 32.4

Biome Distribution

Category Percentage (%)
Aerial Root 1.12
Bulb 0
Endosphere 13.41
Nodule 0.56
Rhizoplane 2.23
Rhizosphere 49.72
Stem 0
Stem Tuber 2.79
Unclassified 30.17

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_623569 2162886007 Bacteria 4661
2 rootH1_10078702 3300003316 Bacteria 2879
3 rootH1_10078702 3300003323 Bacteria 21967
4 rootL2_10002253 3300003322 Bacteria 15368
5 Ga0055536_1000936 3300003781 Bacteria 18787
6 Ga0055536_1001054 3300003781 Bacteria 17401
7 Ga0055536_1003111 3300003781 Bacteria 9023
8 Ga0055530_10001303 3300003791 Bacteria 18787
9 Ga0055530_10004577 3300003791 Bacteria 7055
10 Ga0055531_10001214 3300003794 Bacteria 19744
11 Ga0065704_10074571 3300005289 Bacteria 6177
12 Ga0070668_100002627 3300005347 Bacteria 13198
13 Ga0070697_100010227 3300005536 Bacteria 7314
14 Ga0075364_10047457 3300006051 Bacteria 2797
15 Ga0075366_10038014 3300006195 Bacteria 2842
16 Ga0075370_10032054 3300006353 Bacteria 2936
17 Ga0105251_10015295 3300009011 Bacteria 4201
18 Ga0105243_10004757 3300009148 Bacteria 10671
19 Ga0105243_10014541 3300009148 Bacteria 5954
20 Ga0157371_10006433 3300013102 Bacteria 9694
21 Ga0157371_10019340 3300013102 Bacteria 5024
22 Ga0157371_10187251 3300013102 Bacteria 1481
23 Ga0157370_10163538 3300013104 Bacteria 2070
24 Ga0157370_10274554 3300013104 Bacteria 1557
25 Ga0157369_10005029 3300013105 Bacteria 15482
26 Ga0157369_10054676 3300013105 Bacteria 4310
27 Ga0157372_10059022 3300013307 Bacteria 4290
28 Ga0182006_1034121 3300015261 Bacteria 2037
29 Ga0182005_1002148 3300015265 Bacteria 7283
30 Ga0163161_10024716 3300017792 Bacteria 4247
31 Ga0209676_1000027 3300025292 Bacteria 560222
32 Ga0209676_1000184 3300025292 Bacteria 143543
33 Ga0209676_1000411 3300025292 Bacteria 77084
34 Ga0209676_1000642 3300025292 Bacteria 50288
35 Ga0209050_1000514 3300025298 Bacteria 65226
36 Ga0209050_1000620 3300025298 Bacteria 55670
37 Ga0209050_1005908 3300025298 Bacteria 7472
38 Ga0209256_1005132 3300025299 Bacteria 7748
39 Ga0209051_1001307 3300025303 Bacteria 21901
40 Ga0209257_1001202 3300025304 Bacteria 32525
41 Ga0207646_10320385 3300025922 Bacteria 1401
42 Ga0207709_10000527 3300025935 Bacteria 33281
43 Ga0207709_10009913 3300025935 Bacteria 5247
44 Ga0207668_10018373 3300025972 Bacteria 4398
45 Ga0265336_10010260 3300028666 Bacteria 3211
46 Ga0265324_10000005 3300029957 Bacteria 347038
47 Ga0268256_1000006 3300030500 Bacteria 1063991
48 Ga0268256_1016994 3300030500 Bacteria 2064
49 Ga0265325_10006596 3300031241 Bacteria 7030
50 Ga0307412_10001490 3300031911 Bacteria 12997
51 Ga0307414_10002908 3300032004 Bacteria 9058
52 Ga0307414_10055860 3300032004 Bacteria 2766
53 Ga0307414_10149090 3300032004 Bacteria 1842
54 Ga0307414_10474380 3300032004 Bacteria 1102
55 Ga0373937_0061871 3300036401 Bacteria 3441
56 Ga0395905_0053460 3300037471 Bacteria 3780
57 Ga0436361_1214005 3300039447 Bacteria 5642
58 Ga0439433_0001642 3300041999 Bacteria 4660
59 Ga0439449_0005626 3300042007 Bacteria 4793
60 Ga0450911_001792 3300042115 Bacteria 4610
61 Ga0450901_000949 3300042533 Bacteria 3393
62 Ga0451577_0259607 3300042876 Bacteria 1573
63 Ga0453684_0263732 3300044712 Bacteria 1972
64 Ga0453684_0319589 3300044712 Unclassified 1759
65 Ga0453684_0401421 3300044712 Bacteria 1535
66 Ga0466968_0000659 3300044735 Bacteria 11813
67 Ga0466960_0003490 3300044901 Bacteria 6046
68 Ga0451576_0134222 3300045051 Bacteria 2581
69 Ga0495584_0012059 3300046491 Bacteria 4419
70 Ga0495585_0014555 3300046492 Bacteria 4580
71 Ga0495583_0000011 3300046506 Bacteria 350215
72 Ga0495631_0077608 3300046518 Bacteria 1433
73 Ga0495663_0000387 3300046525 Bacteria 16315
74 Ga0495609_0114421 3300046538 Bacteria 1163
75 Ga0495597_0006483 3300046542 Bacteria 6052
76 Ga0495633_0000651 3300046558 Bacteria 32098
77 Ga0495633_0017339 3300046558 Bacteria 3685
78 Ga0495656_0004966 3300046615 Bacteria 4581
79 Ga0495668_0000130 3300046616 Bacteria 112924
80 Ga0495668_0002205 3300046616 Bacteria 16584
81 Ga0495668_0056352 3300046616 Bacteria 2169
82 Ga0495625_0001757 3300046660 Bacteria 25057
83 Ga0495625_0062258 3300046660 Bacteria 2638
84 Ga0495661_0035244 3300046665 Bacteria 3141
85 Ga0495671_0028355 3300046692 Bacteria 2886
86 Ga0495679_008179 3300047446 Bacteria 4279
87 Ga0495681_0003162 3300047470 Bacteria 11527
88 Ga0495681_0012370 3300047470 Bacteria 5019
89 Ga0495626_0001528 3300048091 Bacteria 18170
90 Ga0496114_0016235 3300048917 Bacteria 5996
91 Ga0496115_0345430 3300048918 Bacteria 1214
92 Ga0496116_0002572 3300048919 Bacteria 18929
93 Ga0496116_0033056 3300048919 Bacteria 3676
94 Ga0496117_0005868 3300048920 Bacteria 12695
95 Ga0496117_0033156 3300048920 Bacteria 3909
96 Ga0496118_0004751 3300048921 Bacteria 15897
97 Ga0496118_0008964 3300048921 Bacteria 10208
98 Ga0496118_0107669 3300048921 Bacteria 1860
99 Ga0496119_0000015 3300048922 Bacteria 312979
100 Ga0496119_0000570 3300048922 Bacteria 49795
101 Ga0496119_0023171 3300048922 Bacteria 4416
102 Ga0496119_0026893 3300048922 Bacteria 3974
103 Ga0496119_0053517 3300048922 Bacteria 2465
104 Ga0496120_0000029 3300048923 Bacteria 229859
105 Ga0496120_0001357 3300048923 Bacteria 30064
106 Ga0496120_0031947 3300048923 Bacteria 3180
107 Ga0496121_0004863 3300048924 Bacteria 17653
108 Ga0496122_0077015 3300048925 Bacteria 2344
109 Ga0496122_0129111 3300048925 Bacteria 1611
110 Ga0496123_0071738 3300048926 Bacteria 2158
111 Ga0496125_0015985 3300048928 Bacteria 7226
112 Ga0496125_0100323 3300048928 Bacteria 2134
113 Ga0496126_0015014 3300048929 Bacteria 7808
114 Ga0496126_0038356 3300048929 Bacteria 4460
115 Ga0496126_0062957 3300048929 Bacteria 3326
116 Ga0501034_0000521 3300049571 Bacteria 61943
117 Ga0501035_0181764 3300049822 Bacteria 1812
118 nmdc:mga0k408_7608_c1 3300050493 Bacteria 5786
119 nmdc:mga07m45_75428_c1 3300050496 Bacteria 1921
120 Ga0500608_000110 3300053122 Bacteria 33704
121 Ga0500559_0002425 3300053136 Bacteria 9649
122 Ga0500622_0013719 3300053156 Bacteria 4365

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013104 Ga0157370_10274554 Ga0157370_102745541 282
2 3300015261 Ga0182006_1034121 Ga0182006_10341212 322
3 3300039447 Ga0436361_1214005 Ga0436361_1214005_1143_2189 328
4 3300053156 Ga0500622_0013719 Ga0500622_0013719_2749_3792 330
5 3300025299 Ga0209256_1005132 Ga0209256_10051322 335
6 3300047446 Ga0495679_008179 Ga0495679_008179_878_1918 335
7 3300048920 Ga0496117_0005868 Ga0496117_0005868_10262_11302 335
8 3300048921 Ga0496118_0004751 Ga0496118_0004751_10412_11452 335
9 3300048922 Ga0496119_0000570 Ga0496119_0000570_14293_15333 335
10 3300048923 Ga0496120_0001357 Ga0496120_0001357_13290_14330 335
11 iso_pu_bacteria 2690315857 2691331384 338
12 iso_pu_bacteria 2919534386 2919534947 338
13 iso_pu_bacteria 2510065053 2510283571 339
14 iso_pu_bacteria 2510065055 2510292601 339
15 iso_pu_bacteria 2510065058 2510311693 339
16 iso_pu_bacteria 2687453129 2687579961 339
17 iso_pu_bacteria 2773857672 2774128657 339
18 iso_pu_bacteria 2846033681 2846035549 339
19 iso_pu_bacteria 2917832318 2917837266 339
20 iso_pu_bacteria 2919125081 2919126733 339
21 iso_pu_bacteria 2974298342 2974299216 339
22 iso_pu_bacteria 2984499530 2984501533 339
23 iso_pu_bacteria 2984504281 2984505069 339
24 iso_pu_bacteria 8016728285 8016733079 339
25 iso_pu_bacteria 2842757796 2842758992 340
26 3300003316 rootH1_10078702 rootH1_100787023 342
27 3300003322 rootL2_10002253 rootL2_100022534 342
28 3300032004 Ga0307414_10055860 Ga0307414_100558602 342
29 3300032004 Ga0307414_10149090 Ga0307414_101490902 342
30 iso_pu_bacteria 2537561728 2538424799 342
31 iso_pu_bacteria 2547132130 2547500471 342
32 iso_pu_bacteria 2643221579 2643909315 342
33 iso_pu_bacteria 2747842428 2747949937 342
34 iso_pu_bacteria 2747842501 2748019669 342
35 iso_pu_bacteria 2765235840 2765580533 342
36 iso_pu_bacteria 2808606414 2809123621 342
37 iso_pu_bacteria 2816332141 2816518443 342
38 iso_pu_bacteria 2842391507 2842394448 342
39 iso_pu_bacteria 2855195626 2855197295 342
40 iso_pu_bacteria 2858466076 2858468560 342
41 iso_pu_bacteria 2871272651 2871272885 342
42 iso_pu_bacteria 2871282230 2871285677 342
43 iso_pu_bacteria 2874220319 2874223196 342
44 iso_pu_bacteria 2888366609 2888368883 342
45 iso_pu_bacteria 2900051742 2900051916 342
46 iso_pu_bacteria 2910245624 2910247865 342
47 iso_pu_bacteria 2919089067 2919092446 342
48 iso_pu_bacteria 2919134579 2919138746 342
49 iso_pu_bacteria 2923516293 2923517275 342
50 iso_pu_bacteria 2928496128 2928500227 342
51 iso_pu_bacteria 2931380184 2931383367 342
52 iso_pu_bacteria 2937610967 2937614341 342
53 iso_pu_bacteria 2939626828 2939630930 342
54 iso_pu_bacteria 2961047084 2961049960 342
55 iso_pu_bacteria 2961064222 2961064877 342
56 iso_pu_bacteria 2998344455 2998347687 342
57 3300009011 Ga0105251_10015295 Ga0105251_100152955 343
58 3300013102 Ga0157371_10006433 Ga0157371_100064339 343
59 3300013102 Ga0157371_10187251 Ga0157371_101872512 343
60 3300013105 Ga0157369_10005029 Ga0157369_1000502911 343
61 3300013307 Ga0157372_10059022 Ga0157372_100590223 343
62 3300048925 Ga0496122_0129111 Ga0496122_0129111_459_1517 343
63 iso_pu_bacteria 2554235132 2554818200 343
64 iso_pu_bacteria 2585428106 2587918781 343
65 iso_pu_bacteria 2606217733 2608380502 343
66 iso_pu_bacteria 2643221640 2644225428 343
67 iso_pu_bacteria 2643221642 2644232737 343
68 iso_pu_bacteria 2846037992 2846038186 343
69 iso_pu_bacteria 2884960567 2884964448 343
70 3300032004 Ga0307414_10474380 Ga0307414_104743801 344
71 3300042533 Ga0450901_000949 Ga0450901_000949_2291_3328 344
72 3300046525 Ga0495663_0000387 Ga0495663_0000387_7669_8706 344
73 3300046558 Ga0495633_0000651 Ga0495633_0000651_9763_10800 344
74 iso_pu_bacteria 2857504554 2857508685 344
75 iso_pu_bacteria 2928531327 2928535679 344
76 3300003781 Ga0055536_1001054 Ga0055536_100105415 345
77 3300003791 Ga0055530_10004577 Ga0055530_100045773 345
78 3300003794 Ga0055531_10001214 Ga0055531_1000121415 345
79 3300005536 Ga0070697_100010227 Ga0070697_1000102275 345
80 3300006353 Ga0075370_10032054 Ga0075370_100320542 345
81 3300025292 Ga0209676_1000642 Ga0209676_10006429 345
82 3300025298 Ga0209050_1000620 Ga0209050_100062032 345
83 3300025304 Ga0209257_1001202 Ga0209257_100120215 345
84 3300025922 Ga0207646_10320385 Ga0207646_103203851 345
85 3300037471 Ga0395905_0053460 Ga0395905_0053460_2556_3605 345
86 3300046491 Ga0495584_0012059 Ga0495584_0012059_1109_2179 345
87 3300046492 Ga0495585_0014555 Ga0495585_0014555_416_1486 345
88 3300046506 Ga0495583_0000011 Ga0495583_0000011_262816_263910 345
89 3300046518 Ga0495631_0077608 Ga0495631_0077608_145_1215 345
90 3300046538 Ga0495609_0114421 Ga0495609_0114421_99_1148 345
91 3300046615 Ga0495656_0004966 Ga0495656_0004966_830_1900 345
92 3300046616 Ga0495668_0002205 Ga0495668_0002205_5634_6704 345
93 3300046616 Ga0495668_0056352 Ga0495668_0056352_125_1168 345
94 3300046665 Ga0495661_0035244 Ga0495661_0035244_1481_2551 345
95 3300046692 Ga0495671_0028355 Ga0495671_0028355_1426_2496 345
96 3300047470 Ga0495681_0003162 Ga0495681_0003162_7297_8367 345
97 3300049822 Ga0501035_0181764 Ga0501035_0181764_449_1492 345
98 3300050496 nmdc:mga07m45_75428_c1 nmdc:mga07m45_75428_c1_189_1232 345
99 2162886007 SwRhRL2b_contig_623569 SwRhRL2b_0852.00000930 346
100 3300003781 Ga0055536_1000936 Ga0055536_100093617 346
101 3300003781 Ga0055536_1003111 Ga0055536_10031117 346
102 3300003791 Ga0055530_10001303 Ga0055530_100013033 346
103 3300005289 Ga0065704_10074571 Ga0065704_100745714 346
104 3300005347 Ga0070668_100002627 Ga0070668_1000026275 346
105 3300006051 Ga0075364_10047457 Ga0075364_100474571 346
106 3300006195 Ga0075366_10038014 Ga0075366_100380142 346
107 3300009148 Ga0105243_10004757 Ga0105243_100047575 346
108 3300009148 Ga0105243_10014541 Ga0105243_100145414 346
109 3300013102 Ga0157371_10019340 Ga0157371_100193402 346
110 3300013104 Ga0157370_10163538 Ga0157370_101635382 346
111 3300013105 Ga0157369_10054676 Ga0157369_100546763 346
112 3300015265 Ga0182005_1002148 Ga0182005_10021481 346
113 3300017792 Ga0163161_10024716 Ga0163161_100247161 346
114 3300025292 Ga0209676_1000027 Ga0209676_1000027463 346
115 3300025292 Ga0209676_1000184 Ga0209676_100018461 346
116 3300025292 Ga0209676_1000411 Ga0209676_100041140 346
117 3300025298 Ga0209050_1000514 Ga0209050_100051461 346
118 3300025298 Ga0209050_1005908 Ga0209050_10059086 346
119 3300025303 Ga0209051_1001307 Ga0209051_100130710 346
120 3300025935 Ga0207709_10000527 Ga0207709_1000052720 346
121 3300025935 Ga0207709_10009913 Ga0207709_100099134 346
122 3300025972 Ga0207668_10018373 Ga0207668_100183733 346
123 3300028666 Ga0265336_10010260 Ga0265336_100102602 346
124 3300029957 Ga0265324_10000005 Ga0265324_10000005112 346
125 3300030500 Ga0268256_1000006 Ga0268256_10000061002 346
126 3300030500 Ga0268256_1016994 Ga0268256_10169942 346
127 3300031241 Ga0265325_10006596 Ga0265325_100065964 346
128 3300031911 Ga0307412_10001490 Ga0307412_100014902 346
129 3300032004 Ga0307414_10002908 Ga0307414_100029084 346
130 3300036401 Ga0373937_0061871 Ga0373937_0061871_586_1656 346
131 3300041999 Ga0439433_0001642 Ga0439433_0001642_1052_2092 346
132 3300042007 Ga0439449_0005626 Ga0439449_0005626_2097_3152 346
133 3300042115 Ga0450911_001792 Ga0450911_001792_866_1909 346
134 3300042876 Ga0451577_0259607 Ga0451577_0259607_433_1524 346
135 3300044712 Ga0453684_0263732 Ga0453684_0263732_670_1794 346
136 3300044712 Ga0453684_0319589 Ga0453684_0319589_121_1194 346
137 3300044712 Ga0453684_0401421 Ga0453684_0401421_328_1419 346
138 3300044735 Ga0466968_0000659 Ga0466968_0000659_2996_4036 346
139 3300044901 Ga0466960_0003490 Ga0466960_0003490_1908_2948 346
140 3300045051 Ga0451576_0134222 Ga0451576_0134222_576_1712 346
141 3300046542 Ga0495597_0006483 Ga0495597_0006483_1397_2443 346
142 3300046558 Ga0495633_0017339 Ga0495633_0017339_164_1207 346
143 3300046616 Ga0495668_0000130 Ga0495668_0000130_53331_54380 346
144 3300046660 Ga0495625_0001757 Ga0495625_0001757_18450_19529 346
145 3300046660 Ga0495625_0062258 Ga0495625_0062258_1109_2155 346
146 3300047470 Ga0495681_0012370 Ga0495681_0012370_3359_4405 346
147 3300048091 Ga0495626_0001528 Ga0495626_0001528_13748_14794 346
148 3300048917 Ga0496114_0016235 Ga0496114_0016235_3602_4642 346
149 3300048918 Ga0496115_0345430 Ga0496115_0345430_115_1185 346
150 3300048919 Ga0496116_0002572 Ga0496116_0002572_6260_7303 346
151 3300048919 Ga0496116_0033056 Ga0496116_0033056_613_1656 346
152 3300048920 Ga0496117_0033156 Ga0496117_0033156_545_1588 346
153 3300048921 Ga0496118_0008964 Ga0496118_0008964_4286_5329 346
154 3300048921 Ga0496118_0107669 Ga0496118_0107669_540_1583 346
155 3300048922 Ga0496119_0000015 Ga0496119_0000015_226699_227745 346
156 3300048922 Ga0496119_0023171 Ga0496119_0023171_1083_2126 346
157 3300048922 Ga0496119_0026893 Ga0496119_0026893_2754_3797 346
158 3300048922 Ga0496119_0053517 Ga0496119_0053517_1280_2323 346
159 3300048923 Ga0496120_0000029 Ga0496120_0000029_2115_3161 346
160 3300048923 Ga0496120_0031947 Ga0496120_0031947_558_1601 346
161 3300048924 Ga0496121_0004863 Ga0496121_0004863_11187_12230 346
162 3300048925 Ga0496122_0077015 Ga0496122_0077015_542_1585 346
163 3300048926 Ga0496123_0071738 Ga0496123_0071738_557_1600 346
164 3300048928 Ga0496125_0015985 Ga0496125_0015985_6021_7064 346
165 3300048928 Ga0496125_0100323 Ga0496125_0100323_542_1585 346
166 3300048929 Ga0496126_0015014 Ga0496126_0015014_3432_4475 346
167 3300048929 Ga0496126_0038356 Ga0496126_0038356_2982_4025 346
168 3300048929 Ga0496126_0062957 Ga0496126_0062957_451_1491 346
169 3300049571 Ga0501034_0000521 Ga0501034_0000521_34747_35787 346
170 3300050493 nmdc:mga0k408_7608_c1 nmdc:mga0k408_7608_c1_782_1831 346
171 3300053122 Ga0500608_000110 Ga0500608_000110_11171_12211 346
172 3300053136 Ga0500559_0002425 Ga0500559_0002425_4504_5544 346
173 iso_pu_bacteria 2643221581 2643914837 346
174 iso_pu_bacteria 2791355048 2792462055 346
175 iso_pu_bacteria 2843744320 2843748917 346
176 iso_pu_bacteria 2849560528 2849563034 346
177 iso_pu_bacteria 2849573788 2849578602 346
178 iso_pu_bacteria 2851153111 2851153457 346
179 iso_pu_bacteria 2898329390 2898333529 346

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

67

184

0.96

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

196

404

0.95

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

192

310

0.95

PF03447

NAD_binding_3

Homoserine dehydrogenase, NAD binding domain

73

182

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3kux-assembly1.cif.gz_A structure of the ypo2259 putative oxidoreductase from yersinia pestis 0.969 1 346
3e82-assembly2.cif.gz_E crystal structure of a putative oxidoreductase from klebsiella pneumoniae 0.9673 3 345
3gfg-assembly1.cif.gz_B structure of putative oxidoreductase yvaa from bacillus subtilis in triclinic form 0.9654 1 346
3gfg-assembly3.cif.gz_E structure of putative oxidoreductase yvaa from bacillus subtilis in triclinic form 0.9643 1 346
3gfg-assembly5.cif.gz_I structure of putative oxidoreductase yvaa from bacillus subtilis in triclinic form 0.9643 3 346
ID Description Score Start End Superfamily
af_P77376_2_121_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9887 3 121 3.90.1150.10
af_P77376_2_121_3.90.1150.10 Alpha Beta;Alpha-Beta Complex;Aspartate Aminotransferase, domain 1;Aspartate Aminotransferase, domain 1 0.9725 3 121 3.90.1150.10
3kuxA02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9641 127 346 3.30.360.10
af_O42896_3_122_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9575 5 117 3.90.180.10
3e82E02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;Dihydrodipicolinate Reductase; domain 2 0.9489 127 345 3.30.360.10
ID Description Score Start End GO Terms
AF-A0A2N2SA71-F1-model_v4 Oxidoreductase 0.991 5 95 GO:0000166
AF-A0A377BB82-F1-model_v4 Oxidoreductase (EC 1.-.-.-) 0.9853 92 283 GO:0016491
AF-A0A357NKC6-F1-model_v4 deleted 0.9816 139 346
AF-A0A345YAD5-F1-model_v4 Gfo/Idh/MocA-like oxidoreductase C-terminal domain-containing protein 0.9776 137 346
AF-A0A4U2ZVA3-F1-model_v4 Oxidoreductase 0.9735 66 180 GO:0000166

Feature Viewer

pLDDT pTM Quality
95.93 0.93 High
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Predicted Structure (AlphaFold2)

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