F276147

General Info

Members Datasets Scaffolds Average Seq Length
180 140 360 747

Family's Representative Sequence

Representative Sequence 3300046507|Ga0495606_0000043|Ga0495606_0000043_167883_170237
Length 784
Sequence MNKPTEGIPLSVEAWSAGAPDPLMHRQGLIGKARDRVDGPDKVQGKARFAAEVHLDNLLYAALLGSTIARGRIVSIDTRAAEAAPGVALVMTHQNAPRMQAPTLMMQKPKAAGASDLPVMQDAEIHWNGQAVALVLAETQDQAEHAVTLIRVEYEAAPAMLSFAEAQRHARVPETVLGEPATIEKGEAEAALRGAPVQTDQLYHTPRHNHNAIELHAATVAWDGDNLTVHDATQMVNATAWTLAQIFGIDEKQVRVLSPYVGGGFGGKGLWNHQILAAAAARLAGRPVRIVLTREGVFRHVGGRTTTVQRVALGGPAGGILPDGRPAYGDNAHADREGGDDQRGLSALIHTGIAAMTAHNACPEQFTFPARHLYQTAALKVEQQVADMDMIANTFMRAPGESVGTFALESAIDELAEKMARDPIALRLSIEPEQDPSSSAPFSSRHLREAWQRGAERFGWEHRNPVPRARQEGEWLIGMGCATATYPYMRMAGGAARIRLSADGAVVVEMASHEMGMGTATVQAQHVAERLAVDVDKVRFVYGDTSLPSGTLAGGSSQTASIGAAIIAASEALITALLELATSDSPLAGLRFEDVEARDGGLVKRDDPARHQRYADLLGRAGRDELAVQADAPKPGEMKKFSMHSYGAQFCEVKVSAITGEVRVTRFVGAFDAGRILNAKTATSQFKGGIVMGLGLALMEETLFDERSGRIMNPSLAGYHVPVQMDVPDIEVLWTDIPDPHTPLGAHGIGEIGITGVGAAVANAVYNATGKRIRSLPITLDKLL

Samples

Sample ID Description Type Environment
1 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
41 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
42 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
43 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
47 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
61 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
65 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
68 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
71 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
72 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
73 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
74 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
75 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
76 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
77 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
78 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
79 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
80 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
81 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
82 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
83 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
84 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
85 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
86 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
87 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
88 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
89 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
90 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
91 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
92 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
93 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
96 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
97 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
100 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
101 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
102 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
103 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
104 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
105 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
110 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
111 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
112 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
113 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
118 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
119 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
120 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
121 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
122 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
123 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
124 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
125 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
126 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
127 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
128 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
129 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
130 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
131 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
132 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
133 2513237094 Bradyrhizobium sp. WSM3983 Isolate Nodule
134 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
135 2751185897 Sphingomonas panacis DCY99 Isolate Unclassified
136 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
137 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
138 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
139 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
140 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95
Metatranscriptomes 0
Isolates 5

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15
Nodule 0.56
Rhizoplane 2.78
Rhizosphere 56.11
Stem 0
Stem Tuber 0
Unclassified 0.56

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495606_0000043 3300046507 Bacteria 214367
2 JGI24740J21852_10000448 3300001979 Bacteria 17668
3 JGI25162J39368_1000317 3300002737 Bacteria 42748
4 JGI25152J39213_1000009 3300002773 Bacteria 138285
5 JGI25152J39213_1001755 3300002773 Bacteria 8862
6 JGI25151J46595_10000641 3300003187 Bacteria 30114
7 JGI25165J46597_1000432 3300003214 Bacteria 42748
8 Ga0055526_1005875 3300003771 Bacteria 6878
9 Ga0070677_10001001 3300005333 Bacteria 9148
10 Ga0070669_100068202 3300005353 Bacteria 2625
11 Ga0070671_100006489 3300005355 Bacteria 9355
12 Ga0070674_100000491 3300005356 Bacteria 19880
13 Ga0070714_100036516 3300005435 Bacteria 4121
14 Ga0070713_100010977 3300005436 Bacteria 6570
15 Ga0070678_100014815 3300005456 Bacteria 4932
16 Ga0070698_100050019 3300005471 Bacteria 4263
17 Ga0070699_100076838 3300005518 Bacteria 2907
18 Ga0070665_100086081 3300005548 Bacteria 3149
19 Ga0068856_100015984 3300005614 Bacteria 7254
20 Ga0068852_100075974 3300005616 Bacteria 2965
21 Ga0068859_100004299 3300005617 Bacteria 14543
22 Ga0081455_10003406 3300005937 Bacteria 18292
23 Ga0081455_10004797 3300005937 Bacteria 15028
24 Ga0081455_10008742 3300005937 Bacteria 10487
25 Ga0081540_1000224 3300005983 Bacteria 59493
26 Ga0081540_1018567 3300005983 Bacteria 4259
27 Ga0081539_10038234 3300005985 Bacteria 2846
28 Ga0070717_10033349 3300006028 Bacteria 4154
29 Ga0070717_10041904 3300006028 Bacteria 3734
30 Ga0075365_10008974 3300006038 Bacteria 5716
31 Ga0070712_100002132 3300006175 Bacteria 12163
32 Ga0075370_10006930 3300006353 Bacteria 5740
33 Ga0075428_100078232 3300006844 Bacteria 3610
34 Ga0075430_100012134 3300006846 Bacteria 7337
35 Ga0075431_100029398 3300006847 Bacteria 5657
36 Ga0075434_100009864 3300006871 Bacteria 8931
37 Ga0075429_100017515 3300006880 Bacteria 6195
38 Ga0097620_100004299 3300006931 Bacteria 14543
39 Ga0105240_10001790 3300009093 Bacteria 36216
40 Ga0105240_10007129 3300009093 Bacteria 16285
41 Ga0111539_10022191 3300009094 Bacteria 7804
42 Ga0105247_10000488 3300009101 Bacteria 32940
43 Ga0105237_10002001 3300009545 Bacteria 25940
44 Ga0105239_10033660 3300010375 Bacteria 5627
45 Ga0213876_10000567 3300021384 Bacteria 27564
46 Ga0213875_10002716 3300021388 Bacteria 10447
47 Ga0209437_100341 3300025233 Bacteria 56114
48 Ga0209129_1000217 3300025258 Bacteria 66227
49 Ga0209233_1000355 3300025261 Bacteria 42800
50 Ga0209025_1000239 3300025294 Bacteria 128436
51 Ga0209564_1000051 3300025295 Bacteria 357748
52 Ga0209758_1017789 3300025297 Bacteria 3516
53 Ga0209050_1007778 3300025298 Bacteria 5907
54 Ga0207682_10004948 3300025893 Bacteria 5473
55 Ga0207710_10001599 3300025900 Bacteria 11089
56 Ga0207695_10002598 3300025913 Bacteria 26473
57 Ga0207695_10007897 3300025913 Bacteria 13428
58 Ga0207671_10002298 3300025914 Bacteria 20648
59 Ga0207693_10000735 3300025915 Bacteria 29546
60 Ga0207700_10043961 3300025928 Bacteria 3285
61 Ga0207664_10017271 3300025929 Bacteria 5285
62 Ga0207669_10000499 3300025937 Bacteria 17181
63 Ga0207668_10002267 3300025972 Bacteria 11223
64 Ga0207703_10006439 3300026035 Bacteria 9379
65 Ga0207702_10011250 3300026078 Bacteria 7460
66 Ga0207641_10005924 3300026088 Bacteria 10365
67 Ga0207428_10009132 3300027907 Bacteria 8910
68 Ga0268266_10072221 3300028379 Bacteria 2992
69 Ga0307515_10005957 3300028794 Bacteria 24557
70 Ga0265327_10014322 3300031251 Bacteria 5195
71 Ga0307412_10002306 3300031911 Bacteria 10562
72 Ga0307510_10001425 3300033180 Bacteria 26275
73 Ga0395900_0086221 3300037418 Bacteria 3227
74 Ga0395898_0089242 3300037466 Bacteria 2967
75 Ga0395905_0066241 3300037471 Unclassified 3383
76 Ga0436365_0189523 3300039437 Bacteria 3839
77 Ga0436365_0244982 3300039437 Bacteria 68861
78 Ga0436361_0668831 3300039447 Bacteria 14476
79 Ga0495590_0000047 3300046457 Bacteria 117260
80 Ga0495591_000091 3300046458 Bacteria 101618
81 Ga0495653_0026574 3300046463 Bacteria 4639
82 Ga0495650_0001697 3300046471 Bacteria 20282
83 Ga0495605_0005695 3300046474 Bacteria 7241
84 Ga0495584_0000724 3300046491 Bacteria 21779
85 Ga0495596_0000046 3300046500 Bacteria 89403
86 Ga0495583_0001478 3300046506 Bacteria 23527
87 Ga0495583_0002142 3300046506 Bacteria 17630
88 Ga0495606_0000253 3300046507 Bacteria 94485
89 Ga0495610_0001787 3300046512 Bacteria 18784
90 Ga0495616_0013638 3300046513 Bacteria 4577
91 Ga0495631_0000300 3300046518 Bacteria 34686
92 Ga0495632_0014453 3300046519 Bacteria 4465
93 Ga0495632_0023337 3300046519 Bacteria 3304
94 Ga0495637_0000004 3300046520 Bacteria 589740
95 Ga0495643_0000048 3300046522 Bacteria 212788
96 Ga0495633_0004209 3300046558 Bacteria 9221
97 Ga0495668_0001062 3300046616 Bacteria 29089
98 Ga0495611_0000503 3300046648 Bacteria 23232
99 Ga0495625_0002687 3300046660 Bacteria 18904
100 Ga0495625_0015141 3300046660 Bacteria 6120
101 Ga0495657_0005263 3300046675 Bacteria 10240
102 Ga0495671_0035434 3300046692 Bacteria 2534
103 Ga0495649_0000221 3300046694 Bacteria 50196
104 Ga0495604_0008845 3300047317 Bacteria 7959
105 Ga0495672_0000861 3300047320 Bacteria 31983
106 Ga0495680_0016447 3300047322 Bacteria 6352
107 Ga0495683_0007452 3300047323 Bacteria 5912
108 Ga0495677_0000253 3300047445 Bacteria 23432
109 Ga0495673_0007486 3300047469 Bacteria 6270
110 Ga0495686_0026230 3300047472 Bacteria 3813
111 Ga0495602_0018413 3300048088 Bacteria 6975
112 Ga0495615_0000006 3300048090 Bacteria 96050
113 Ga0496104_0019391 3300048907 Bacteria 6222
114 Ga0496105_0012389 3300048908 Bacteria 6752
115 Ga0496106_0036758 3300048909 Bacteria 3663
116 Ga0496107_0059381 3300048910 Bacteria 2768
117 Ga0496116_0000256 3300048919 Bacteria 93252
118 Ga0496116_0005006 3300048919 Bacteria 12475
119 Ga0496116_0053758 3300048919 Bacteria 2657
120 Ga0496117_0015591 3300048920 Bacteria 6466
121 Ga0496117_0026268 3300048920 Bacteria 4560
122 Ga0496118_0000434 3300048921 Bacteria 69469
123 Ga0496118_0037940 3300048921 Bacteria 3869
124 Ga0496119_0002306 3300048922 Bacteria 21071
125 Ga0496121_0000072 3300048924 Bacteria 244975
126 Ga0496121_0000091 3300048924 Bacteria 216685
127 Ga0496121_0008601 3300048924 Bacteria 11954
128 Ga0496121_0019566 3300048924 Bacteria 6761
129 Ga0496121_0043930 3300048924 Bacteria 3862
130 Ga0496122_0001700 3300048925 Bacteria 34114
131 Ga0496122_0002223 3300048925 Bacteria 28285
132 Ga0496122_0004148 3300048925 Bacteria 18288
133 Ga0496122_0018819 3300048925 Bacteria 6351
134 Ga0496122_0020828 3300048925 Bacteria 5901
135 Ga0496122_0056100 3300048925 Bacteria 2940
136 Ga0496122_0056919 3300048925 Bacteria 2909
137 Ga0496123_0000571 3300048926 Bacteria 62838
138 Ga0496123_0000719 3300048926 Bacteria 54039
139 Ga0496123_0005909 3300048926 Bacteria 12083
140 Ga0496123_0015708 3300048926 Bacteria 6193
141 Ga0496124_0000265 3300048927 Bacteria 101352
142 Ga0496124_0002365 3300048927 Bacteria 24886
143 Ga0496124_0003244 3300048927 Bacteria 20087
144 Ga0496124_0009393 3300048927 Bacteria 10077
145 Ga0496124_0030523 3300048927 Bacteria 4783
146 Ga0496125_0007025 3300048928 Bacteria 12044
147 Ga0496125_0054257 3300048928 Bacteria 3277
148 Ga0496126_0000863 3300048929 Bacteria 53292
149 Ga0496126_0008358 3300048929 Bacteria 11168
150 Ga0496126_0010308 3300048929 Bacteria 9812
151 Ga0496126_0027140 3300048929 Bacteria 5476
152 Ga0495678_000123 3300049459 Bacteria 90881
153 Ga0501047_0028926 3300049581 Bacteria 5345
154 nmdc:mga0yw44_3911_c1 3300050492 Bacteria 6718
155 nmdc:mga05p37_122989_c1 3300050507 Bacteria 3188
156 nmdc:mga0qj67_16564_c1 3300050509 Bacteria 5594
157 nmdc:mga06r32_35865_c1 3300050510 Bacteria 4681
158 nmdc:mga0n895_5454_c1 3300050512 Bacteria 10637
159 nmdc:mga0a205_49648_c1 3300050515 Bacteria 4051
160 Ga0495619_0006965 3300053085 Bacteria 7154
161 Ga0500643_000603 3300053087 Bacteria 24488
162 Ga0500643_001445 3300053087 Bacteria 13680
163 Ga0500643_002130 3300053087 Bacteria 10494
164 Ga0500583_0002595 3300053092 Bacteria 5471
165 Ga0500641_0003274 3300053096 Bacteria 5728
166 Ga0500641_0005330 3300053096 Bacteria 4551
167 Ga0500595_001483 3300053119 Bacteria 12469
168 Ga0500618_006865 3300053125 Bacteria 3301
169 Ga0500658_0005685 3300053134 Bacteria 4643
170 Ga0500559_0000732 3300053136 Bacteria 21586
171 Ga0500637_0057973 3300053178 Bacteria 2215
172 2511126024 2510917021 Bacteria 5705459
173 2513639910 2513237094 Bacteria 8789602
174 2600228559 2599185359 Bacteria 4772316
175 2753765637 2751185897 Bacteria 5322941
176 2894817457 2894817345 Bacteria 4892941
177 2919711821 2919709256 Bacteria 4318106
178 2928530345 2928526807 Bacteria 4760224
179 2929203667 2929199973 Bacteria 7260745
180 8055911142 8055909800 Bacteria 7278581
181 Ga0495606_0000043
182 JGI24740J21852_10000448
183 JGI25162J39368_1000317
184 JGI25152J39213_1000009
185 JGI25152J39213_1001755
186 JGI25151J46595_10000641
187 JGI25165J46597_1000432
188 Ga0055526_1005875
189 Ga0070677_10001001
190 Ga0070669_100068202
191 Ga0070671_100006489
192 Ga0070674_100000491
193 Ga0070714_100036516
194 Ga0070713_100010977
195 Ga0070678_100014815
196 Ga0070698_100050019
197 Ga0070699_100076838
198 Ga0070665_100086081
199 Ga0068856_100015984
200 Ga0068852_100075974
201 Ga0068859_100004299
202 Ga0081455_10003406
203 Ga0081455_10004797
204 Ga0081455_10008742
205 Ga0081540_1000224
206 Ga0081540_1018567
207 Ga0081539_10038234
208 Ga0070717_10033349
209 Ga0070717_10041904
210 Ga0075365_10008974
211 Ga0070712_100002132
212 Ga0075370_10006930
213 Ga0075428_100078232
214 Ga0075430_100012134
215 Ga0075431_100029398
216 Ga0075434_100009864
217 Ga0075429_100017515
218 Ga0097620_100004299
219 Ga0105240_10001790
220 Ga0105240_10007129
221 Ga0111539_10022191
222 Ga0105247_10000488
223 Ga0105237_10002001
224 Ga0105239_10033660
225 Ga0213876_10000567
226 Ga0213875_10002716
227 Ga0209437_100341
228 Ga0209129_1000217
229 Ga0209233_1000355
230 Ga0209025_1000239
231 Ga0209564_1000051
232 Ga0209758_1017789
233 Ga0209050_1007778
234 Ga0207682_10004948
235 Ga0207710_10001599
236 Ga0207695_10002598
237 Ga0207695_10007897
238 Ga0207671_10002298
239 Ga0207693_10000735
240 Ga0207700_10043961
241 Ga0207664_10017271
242 Ga0207669_10000499
243 Ga0207668_10002267
244 Ga0207703_10006439
245 Ga0207702_10011250
246 Ga0207641_10005924
247 Ga0207428_10009132
248 Ga0268266_10072221
249 Ga0307515_10005957
250 Ga0265327_10014322
251 Ga0307412_10002306
252 Ga0307510_10001425
253 Ga0395900_0086221
254 Ga0395898_0089242
255 Ga0395905_0066241
256 Ga0436365_0189523
257 Ga0436365_0244982
258 Ga0436361_0668831
259 Ga0495590_0000047
260 Ga0495591_000091
261 Ga0495653_0026574
262 Ga0495650_0001697
263 Ga0495605_0005695
264 Ga0495584_0000724
265 Ga0495596_0000046
266 Ga0495583_0001478
267 Ga0495583_0002142
268 Ga0495606_0000253
269 Ga0495610_0001787
270 Ga0495616_0013638
271 Ga0495631_0000300
272 Ga0495632_0014453
273 Ga0495632_0023337
274 Ga0495637_0000004
275 Ga0495643_0000048
276 Ga0495633_0004209
277 Ga0495668_0001062
278 Ga0495611_0000503
279 Ga0495625_0002687
280 Ga0495625_0015141
281 Ga0495657_0005263
282 Ga0495671_0035434
283 Ga0495649_0000221
284 Ga0495604_0008845
285 Ga0495672_0000861
286 Ga0495680_0016447
287 Ga0495683_0007452
288 Ga0495677_0000253
289 Ga0495673_0007486
290 Ga0495686_0026230
291 Ga0495602_0018413
292 Ga0495615_0000006
293 Ga0496104_0019391
294 Ga0496105_0012389
295 Ga0496106_0036758
296 Ga0496107_0059381
297 Ga0496116_0000256
298 Ga0496116_0005006
299 Ga0496116_0053758
300 Ga0496117_0015591
301 Ga0496117_0026268
302 Ga0496118_0000434
303 Ga0496118_0037940
304 Ga0496119_0002306
305 Ga0496121_0000072
306 Ga0496121_0000091
307 Ga0496121_0008601
308 Ga0496121_0019566
309 Ga0496121_0043930
310 Ga0496122_0001700
311 Ga0496122_0002223
312 Ga0496122_0004148
313 Ga0496122_0018819
314 Ga0496122_0020828
315 Ga0496122_0056100
316 Ga0496122_0056919
317 Ga0496123_0000571
318 Ga0496123_0000719
319 Ga0496123_0005909
320 Ga0496123_0015708
321 Ga0496124_0000265
322 Ga0496124_0002365
323 Ga0496124_0003244
324 Ga0496124_0009393
325 Ga0496124_0030523
326 Ga0496125_0007025
327 Ga0496125_0054257
328 Ga0496126_0000863
329 Ga0496126_0008358
330 Ga0496126_0010308
331 Ga0496126_0027140
332 Ga0495678_000123
333 Ga0501047_0028926
334 nmdc:mga0yw44_3911_c1
335 nmdc:mga05p37_122989_c1
336 nmdc:mga0qj67_16564_c1
337 nmdc:mga06r32_35865_c1
338 nmdc:mga0n895_5454_c1
339 nmdc:mga0a205_49648_c1
340 Ga0495619_0006965
341 Ga0500643_000603
342 Ga0500643_001445
343 Ga0500643_002130
344 Ga0500583_0002595
345 Ga0500641_0003274
346 Ga0500641_0005330
347 Ga0500595_001483
348 Ga0500618_006865
349 Ga0500658_0005685
350 Ga0500559_0000732
351 Ga0500637_0057973
352 2511126024
353 2513639910
354 2600228559
355 2753765637
356 2894817457
357 2919711821
358 2928530345
359 2929203667
360 8055911142

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20256

MoCoBD_2

Molybdopterin cofactor-binding domain

453

728

0.94

PF02738

MoCoBD_1

Molybdopterin cofactor-binding domain

168

322

0.93

PF02738

MoCoBD_1

Molybdopterin cofactor-binding domain

334

429

0.91

PF01315

Ald_Xan_dh_C

Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain

44

158

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5g5g-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase 0.9162 16 750
5g5h-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase r440h mutant 0.913 16 750
5g5g-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase 0.9078 16 750
5g5h-assembly1.cif.gz_C escherichia coli periplasmic aldehyde oxidase r440h mutant 0.9058 16 750
5y6q-assembly1.cif.gz_C crystal structure of an aldehyde oxidase from methylobacillus sp. ky4400 0.8988 32 746
ID Description Score Start End Superfamily
1hfoF00 Alpha Beta;2-Layer Sandwich;Macrophage Migration Inhibitory Factor;Macrophage Migration Inhibitory Factor 0.8963 493 514 3.30.429.10
5g5hC03 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.8921 213 298 3.30.365.10
1jroB01 Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 0.875 31 159 3.90.1170.50
1t3qB03 Alpha Beta;2-Layer Sandwich;Aldehyde Oxidoreductase; domain 4;Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.8702 213 296 3.30.365.10
3zyvA07 Alpha Beta;Alpha-Beta Complex;Aldehyde Oxidoreductase; domain 3;Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 0.8649 31 159 3.90.1170.50
ID Description Score Start End GO Terms
AF-A0A444K1Q6-F1-model_v4 Xanthine dehydrogenase family protein molybdopterin-binding subunit 0.9761 69 640 GO:0005506
GO:0016491
AF-A0A520JHY6-F1-model_v4 Xanthine dehydrogenase family protein molybdopterin-binding subunit 0.9719 33 746 GO:0005506
GO:0016491
AF-A0A245ZJI6-F1-model_v4 Xanthine dehydrogenase molybdenum-binding subunit (EC 1.17.1.4) 0.9694 11 746 GO:0004854
GO:0005506
AF-A0A520HQT1-F1-model_v4 Xanthine dehydrogenase family protein molybdopterin-binding subunit 0.9626 88 441 GO:0005506
GO:0016491
AF-A0A520HQT1-F1-model_v4 Xanthine dehydrogenase family protein molybdopterin-binding subunit 0.9573 88 441 GO:0005506
GO:0016491

Map