F279079

General Info

Members Datasets Scaffolds Average Seq Length
182 142 364 888

Family's Representative Sequence

Representative Sequence 3300009176|Ga0105242_10013939|Ga0105242_100139393
Length 938
Sequence MRPLAPAPPALDDPTTPRLVLRDGTVATVRRSTADDRDAMRLFFHELSPESRRRRFFTAAEPTDALVERLCDSADGRRNLTLVAVRQTGTETRFIAVGSYFATSDGTAEAAFAVDDRFQGKGLGTELLERLAALAANHGFQRFDATTLVDNHGMLEVFRDSGFELRSKSSPGVVDVALTLQPTADGVISSERRHRLATVASLRPLLEPRAVAVVGASRQAGSIGGRVLGALLSTGFTGPVYPVNPAATEIAGQRVYASMRDVPAGVDLAVIAVPHDRVPGVVDDCAAAGVKSLVIITAGYAEVGDEGRARQHALVEQVRGYGMRMVGPNCMGILNANPALRLNASFSPLFPSPGHVGLSSQSGALGLAIIALAGQRGIGLSTFVSVGNKADVSSNDLLEYWEDDPATRVILLYLESFGNPRRFARLARRLGRTKPIVAVKAGRTRGGSRAAGSHTAALAANDIAVDALFHQTGAIRADTIAEMFDVAACLEAQPLPAGRRVAIVTNAGGPGILAVDACESAGLIVAPFPPATRAALAAFLPQAASTGNPVDMVASAGPDEYRRAIEIALADAGTDALLVIYAPVDAAQSEATIAAIRQGIVNGRAAGAASKTILACVMGDAGRPHPFQADGEQIPAYAFPENAIRALAKAAAYAEWRAQPPGLLWGFDDVYPEEARQICRGALETRGDTWLTDEEMRRVLNSFRLPLVASAVARTAEDAVASACLLGFPVAAKIRSDRVQHKTDIGGVCLNLQDAAAVQRAFDEIVARAKAAGLDADADGVLIQPMLTSGVETMIGISADPLFGPLIGFGLGGVYVELMADMGFRIAPLTDRDADELIHTIRGFKRLEGYRGQPRLTSMRCATCCCGFRGLPTKFQRSSSSISIQSSPCRTGMAAASWTHASRSGPPARKRSPRCPCRDPDPAPVDFRHALIGGTGRR

Samples

Sample ID Description Type Environment
1 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
2 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
3 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
4 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
5 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
6 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
7 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
15 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
16 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
17 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
34 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
48 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
52 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
53 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
54 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
60 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
61 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
62 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
63 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
64 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
65 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
66 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
67 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
68 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
69 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
70 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
71 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
72 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
73 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
74 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
75 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
76 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
77 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
80 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
81 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
82 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
83 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
84 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
90 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
91 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
100 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
103 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
104 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
105 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
106 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
107 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
108 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
113 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
114 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
115 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
116 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
117 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
118 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
119 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
120 2527291627 Frankia casuarinae Thr Isolate Nodule
121 2527291629 Frankia sp. BMG5.23 Isolate Nodule
122 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
123 2576861822 Frankia sp. CeD Isolate Nodule
124 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
125 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
126 2619618881 Frankia sp. ACN1ag Isolate Unclassified
127 2619619003 Frankia sp. CpI1-P Isolate Nodule
128 2626541554 Frankia sp. AvcI.1 Isolate Nodule
129 2684623036 Frankia sp. CgIM4 Isolate Nodule
130 2710264753 Frankia sp. KB5 Isolate Nodule
131 2773857924 Frankia sp. CgIS1 Isolate Nodule
132 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
133 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
134 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
135 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
136 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
137 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
138 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
139 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
140 637000116 Frankia casuarinae CcI3 Isolate Nodule
141 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
142 8054913762 Frankia gtarii Agncl-10 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 86.81
Metatranscriptomes 0.55
Isolates 12.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 5.49
Rhizoplane 4.4
Rhizosphere 80.77
Stem 0
Stem Tuber 0.55
Unclassified 1.1

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105242_10013939 3300009176 Bacteria 6220
2 Ga0068868_100032760 3300005338 Bacteria 3999
3 Ga0070668_100001338 3300005347 Bacteria 17603
4 Ga0070714_100054121 3300005435 Bacteria 3428
5 Ga0070711_100000003 3300005439 Bacteria 192172
6 Ga0070663_100005880 3300005455 Bacteria 7336
7 Ga0068867_100011172 3300005459 Bacteria 6335
8 Ga0068867_100018453 3300005459 Bacteria 4960
9 Ga0070707_100004842 3300005468 Bacteria 12613
10 Ga0070698_100011977 3300005471 Bacteria 9200
11 Ga0070684_100021043 3300005535 Bacteria 5420
12 Ga0070665_100002598 3300005548 Bacteria 19719
13 Ga0070665_100008888 3300005548 Bacteria 10174
14 Ga0068857_100049307 3300005577 Bacteria 3736
15 Ga0068858_100026290 3300005842 Bacteria 5411
16 Ga0081455_10000093 3300005937 Bacteria 97067
17 Ga0081455_10000721 3300005937 Bacteria 42889
18 Ga0081538_10005079 3300005981 Bacteria 11955
19 Ga0081538_10007848 3300005981 Bacteria 9153
20 Ga0097621_100006703 3300006237 Bacteria 8185
21 Ga0068871_100001155 3300006358 Bacteria 17728
22 Ga0068871_100001758 3300006358 Bacteria 14599
23 Ga0075428_100002604 3300006844 Bacteria 19618
24 Ga0075428_100016380 3300006844 Bacteria 8191
25 Ga0075428_100091951 3300006844 Bacteria 3308
26 Ga0075430_100007061 3300006846 Bacteria 9470
27 Ga0075431_100010717 3300006847 Bacteria 9212
28 Ga0075431_100014944 3300006847 Bacteria 7860
29 Ga0075431_100028257 3300006847 Bacteria 5760
30 Ga0075433_10009662 3300006852 Bacteria 7720
31 Ga0075429_100007391 3300006880 Bacteria 9537
32 Ga0068865_100000259 3300006881 Bacteria 29371
33 Ga0075436_100000587 3300006914 Bacteria 23807
34 Ga0075436_100011822 3300006914 Bacteria 5990
35 Ga0111539_10000313 3300009094 Bacteria 59049
36 Ga0111539_10050535 3300009094 Bacteria 4953
37 Ga0105245_10005484 3300009098 Bacteria 11143
38 Ga0105247_10000014 3300009101 Bacteria 285043
39 Ga0105247_10002022 3300009101 Bacteria 14047
40 Ga0114129_10007155 3300009147 Bacteria 15877
41 Ga0114129_10023722 3300009147 Bacteria 8697
42 Ga0114129_10034527 3300009147 Bacteria 7144
43 Ga0105242_10008428 3300009176 Bacteria 7923
44 Ga0105248_10001088 3300009177 Bacteria 30070
45 Ga0105248_10024166 3300009177 Bacteria 6754
46 Ga0157378_10003054 3300013297 Bacteria 14879
47 Ga0157375_10040722 3300013308 Bacteria 4481
48 Ga0163163_10002224 3300014325 Bacteria 16330
49 Ga0163163_10022964 3300014325 Bacteria 5915
50 Ga0157376_10004154 3300014969 Bacteria 10036
51 Ga0157376_10024922 3300014969 Bacteria 4705
52 Ga0207710_10000031 3300025900 Bacteria 285157
53 Ga0207693_10004697 3300025915 Bacteria 11493
54 Ga0207663_10000006 3300025916 Bacteria 253740
55 Ga0207646_10002764 3300025922 Bacteria 20494
56 Ga0207706_10032654 3300025933 Unclassified 4634
57 Ga0207706_10043030 3300025933 Bacteria 4002
58 Ga0207686_10001303 3300025934 Bacteria 14292
59 Ga0207686_10011678 3300025934 Bacteria 4817
60 Ga0207711_10002299 3300025941 Bacteria 17138
61 Ga0207689_10063791 3300025942 Bacteria 3031
62 Ga0207703_10005246 3300026035 Bacteria 10451
63 Ga0207678_10001774 3300026067 Bacteria 19744
64 Ga0207641_10022068 3300026088 Bacteria 5237
65 Ga0207648_10024633 3300026089 Bacteria 5368
66 Ga0207676_10003441 3300026095 Bacteria 11198
67 Ga0207428_10003037 3300027907 Bacteria 16518
68 Ga0265319_1001148 3300028563 Bacteria 16438
69 Ga0307515_10041045 3300028794 Bacteria 7292
70 Ga0265316_10008006 3300031344 Bacteria 9867
71 Ga0265316_10009059 3300031344 Bacteria 9173
72 Ga0307408_100026106 3300031548 Bacteria 4007
73 Ga0316576_10017421 3300031727 Bacteria 4879
74 Ga0307413_10004953 3300031824 Bacteria 5871
75 Ga0307518_10000905 3300031838 Bacteria 22093
76 Ga0307409_100001355 3300031995 Bacteria 11919
77 Ga0307416_100000356 3300032002 Bacteria 23741
78 Ga0307415_100000553 3300032126 Bacteria 16385
79 Ga0316593_10002247 3300032168 Bacteria 4524
80 Ga0307507_10006378 3300033179 Bacteria 18163
81 Ga0373926_0003738 3300035083 Bacteria 4954
82 Ga0373923_0002294 3300035111 Bacteria 5843
83 Ga0373945_0001194 3300035116 Bacteria 7897
84 Ga0373943_0004376 3300035170 Bacteria 6404
85 Ga0373946_0000569 3300035171 Bacteria 12183
86 Ga0373924_0003555 3300035410 Bacteria 5367
87 Ga0373935_0002045 3300035692 Bacteria 11415
88 Ga0316582_0006668 3300036647 Bacteria 6090
89 Ga0316582_0012258 3300036647 Bacteria 4775
90 Ga0316582_0014775 3300036647 Unclassified 4443
91 Ga0316581_0002224 3300037588 Bacteria 4593
92 Ga0466967_0010712 3300045976 Bacteria 6893
93 Ga0495592_0023245 3300046454 Bacteria 4715
94 Ga0495639_0000464 3300046475 Bacteria 19302
95 Ga0495630_0004764 3300046517 Bacteria 9518
96 Ga0495666_0003337 3300046526 Bacteria 8105
97 Ga0495634_0008489 3300046642 Bacteria 7641
98 Ga0495635_0003415 3300046663 Bacteria 10980
99 Ga0495647_0000212 3300046681 Bacteria 15653
100 Ga0495658_0027917 3300046683 Bacteria 3042
101 Ga0495613_0008496 3300046689 Bacteria 7620
102 Ga0495624_0000732 3300046690 Bacteria 25830
103 Ga0495676_0016507 3300047321 Bacteria 6549
104 Ga0495676_0044398 3300047321 Bacteria 3628
105 Ga0495680_0020050 3300047322 Bacteria 5634
106 Ga0495684_0027644 3300047471 Bacteria 4356
107 Ga0495593_0012923 3300047673 Bacteria 4768
108 Ga0496108_0006980 3300048911 Bacteria 9142
109 Ga0496109_0009724 3300048912 Bacteria 8209
110 Ga0496109_0050297 3300048912 Bacteria 3796
111 Ga0496110_0001833 3300048913 Bacteria 15669
112 Ga0496111_0010191 3300048914 Bacteria 6295
113 Ga0496112_0011604 3300048915 Bacteria 8057
114 Ga0496113_0001681 3300048916 Bacteria 12533
115 Ga0496119_0000373 3300048922 Bacteria 61923
116 Ga0496120_0000156 3300048923 Bacteria 112926
117 Ga0501036_0017291 3300049572 Bacteria 6026
118 Ga0501036_0035926 3300049572 Bacteria 4192
119 Ga0501038_0029715 3300049574 Bacteria 4840
120 Ga0501038_0068174 3300049574 Bacteria 3025
121 Ga0501039_0047567 3300049575 Bacteria 3315
122 Ga0501040_0009466 3300049576 Bacteria 6355
123 Ga0501040_0014577 3300049576 Bacteria 5183
124 Ga0501040_0027476 3300049576 Bacteria 3832
125 Ga0501041_0006454 3300049577 Bacteria 6865
126 Ga0501047_0064171 3300049581 Bacteria 3542
127 Ga0501048_0016674 3300049582 Bacteria 5416
128 Ga0501071_0000845 3300049587 Bacteria 16406
129 Ga0501071_0011467 3300049587 Bacteria 5972
130 Ga0501072_0002869 3300049588 Bacteria 12953
131 Ga0501072_0020331 3300049588 Bacteria 5142
132 Ga0501074_0000170 3300049590 Bacteria 34950
133 Ga0501074_0003176 3300049590 Bacteria 11591
134 Ga0501075_0000292 3300049591 Bacteria 27866
135 Ga0501075_0010803 3300049591 Bacteria 6432
136 Ga0501076_0010481 3300049592 Bacteria 6880
137 Ga0501076_0042994 3300049592 Bacteria 3559
138 Ga0501077_0017256 3300049593 Bacteria 4553
139 Ga0501077_0033571 3300049593 Bacteria 3266
140 Ga0501079_0001292 3300049741 Bacteria 17618
141 Ga0501079_0008221 3300049741 Bacteria 7908
142 Ga0501081_0004725 3300049743 Bacteria 8757
143 Ga0501083_0020415 3300049744 Bacteria 4609
144 Ga0501045_0000425 3300049824 Bacteria 25783
145 Ga0501045_0005818 3300049824 Bacteria 8537
146 nmdc:mga05p37_78532_c1 3300050507 Bacteria 4064
147 nmdc:mga05p37_9846_c1 3300050507 Bacteria 11345
148 nmdc:mga0qj67_821_c1 3300050509 Bacteria 21232
149 nmdc:mga06r32_10015_c1 3300050510 Bacteria 8553
150 nmdc:mga08y16_11151_c1 3300050511 Bacteria 9439
151 nmdc:mga08y16_41552_c1 3300050511 Bacteria 4817
152 nmdc:mga0n895_4983_c1 3300050512 Bacteria 11020
153 nmdc:mga08x19_13786_c1 3300050514 Bacteria 4895
154 nmdc:mga08x19_45_c1 3300050514 Bacteria 147507
155 nmdc:mga0a205_15636_c1 3300050515 Bacteria 7092
156 Ga0495619_0007569 3300053085 Bacteria 6875
157 Ga0501084_0000186 3300054114 Bacteria 48306
158 Ga0501082_0014273 3300060353 Bacteria 6836
159 Ga0530510_0014261 3300061734 Bacteria 5603
160 2528203787 2527291627 Bacteria 5309833
161 2528213508 2527291629 Bacteria 5267418
162 2546948083 2546825537 Bacteria 5389291
163 2579748795 2576861822 Bacteria 5004595
164 2579853108 2579778521 Bacteria 7624758
165 2586062692 2585427649 Bacteria 9053857
166 2619855885 2619618881 Bacteria 7521104
167 2620348327 2619619003 Bacteria 7619552
168 2626635376 2626541554 Bacteria 7741902
169 2686541676 2684623036 Bacteria 5199090
170 2710604260 2710264753 Bacteria 5455564
171 2774864697 2773857924 Bacteria 5256821
172 2809588132 2808606522 Bacteria 9488490
173 2866615047 2866612099 Bacteria 7543886
174 2891401020 2891395885 Bacteria 9251614
175 2891562546 2891554331 Bacteria 8812224
176 2899366906 2899359706 Bacteria 10940472
177 2899372193 2899370129 Bacteria 6781179
178 2915773653 2915768154 Bacteria 8424322
179 2917741783 2917736166 Bacteria 9690793
180 637880824 637000116 Bacteria 5433628
181 8003317922 8003314358 Bacteria 10575343
182 8054915350 8054913762 Bacteria 7713009
183 Ga0105242_10013939
184 Ga0068868_100032760
185 Ga0070668_100001338
186 Ga0070714_100054121
187 Ga0070711_100000003
188 Ga0070663_100005880
189 Ga0068867_100011172
190 Ga0068867_100018453
191 Ga0070707_100004842
192 Ga0070698_100011977
193 Ga0070684_100021043
194 Ga0070665_100002598
195 Ga0070665_100008888
196 Ga0068857_100049307
197 Ga0068858_100026290
198 Ga0081455_10000093
199 Ga0081455_10000721
200 Ga0081538_10005079
201 Ga0081538_10007848
202 Ga0097621_100006703
203 Ga0068871_100001155
204 Ga0068871_100001758
205 Ga0075428_100002604
206 Ga0075428_100016380
207 Ga0075428_100091951
208 Ga0075430_100007061
209 Ga0075431_100010717
210 Ga0075431_100014944
211 Ga0075431_100028257
212 Ga0075433_10009662
213 Ga0075429_100007391
214 Ga0068865_100000259
215 Ga0075436_100000587
216 Ga0075436_100011822
217 Ga0111539_10000313
218 Ga0111539_10050535
219 Ga0105245_10005484
220 Ga0105247_10000014
221 Ga0105247_10002022
222 Ga0114129_10007155
223 Ga0114129_10023722
224 Ga0114129_10034527
225 Ga0105242_10008428
226 Ga0105248_10001088
227 Ga0105248_10024166
228 Ga0157378_10003054
229 Ga0157375_10040722
230 Ga0163163_10002224
231 Ga0163163_10022964
232 Ga0157376_10004154
233 Ga0157376_10024922
234 Ga0207710_10000031
235 Ga0207693_10004697
236 Ga0207663_10000006
237 Ga0207646_10002764
238 Ga0207706_10032654
239 Ga0207706_10043030
240 Ga0207686_10001303
241 Ga0207686_10011678
242 Ga0207711_10002299
243 Ga0207689_10063791
244 Ga0207703_10005246
245 Ga0207678_10001774
246 Ga0207641_10022068
247 Ga0207648_10024633
248 Ga0207676_10003441
249 Ga0207428_10003037
250 Ga0265319_1001148
251 Ga0307515_10041045
252 Ga0265316_10008006
253 Ga0265316_10009059
254 Ga0307408_100026106
255 Ga0316576_10017421
256 Ga0307413_10004953
257 Ga0307518_10000905
258 Ga0307409_100001355
259 Ga0307416_100000356
260 Ga0307415_100000553
261 Ga0316593_10002247
262 Ga0307507_10006378
263 Ga0373926_0003738
264 Ga0373923_0002294
265 Ga0373945_0001194
266 Ga0373943_0004376
267 Ga0373946_0000569
268 Ga0373924_0003555
269 Ga0373935_0002045
270 Ga0316582_0006668
271 Ga0316582_0012258
272 Ga0316582_0014775
273 Ga0316581_0002224
274 Ga0466967_0010712
275 Ga0495592_0023245
276 Ga0495639_0000464
277 Ga0495630_0004764
278 Ga0495666_0003337
279 Ga0495634_0008489
280 Ga0495635_0003415
281 Ga0495647_0000212
282 Ga0495658_0027917
283 Ga0495613_0008496
284 Ga0495624_0000732
285 Ga0495676_0016507
286 Ga0495676_0044398
287 Ga0495680_0020050
288 Ga0495684_0027644
289 Ga0495593_0012923
290 Ga0496108_0006980
291 Ga0496109_0009724
292 Ga0496109_0050297
293 Ga0496110_0001833
294 Ga0496111_0010191
295 Ga0496112_0011604
296 Ga0496113_0001681
297 Ga0496119_0000373
298 Ga0496120_0000156
299 Ga0501036_0017291
300 Ga0501036_0035926
301 Ga0501038_0029715
302 Ga0501038_0068174
303 Ga0501039_0047567
304 Ga0501040_0009466
305 Ga0501040_0014577
306 Ga0501040_0027476
307 Ga0501041_0006454
308 Ga0501047_0064171
309 Ga0501048_0016674
310 Ga0501071_0000845
311 Ga0501071_0011467
312 Ga0501072_0002869
313 Ga0501072_0020331
314 Ga0501074_0000170
315 Ga0501074_0003176
316 Ga0501075_0000292
317 Ga0501075_0010803
318 Ga0501076_0010481
319 Ga0501076_0042994
320 Ga0501077_0017256
321 Ga0501077_0033571
322 Ga0501079_0001292
323 Ga0501079_0008221
324 Ga0501081_0004725
325 Ga0501083_0020415
326 Ga0501045_0000425
327 Ga0501045_0005818
328 nmdc:mga05p37_78532_c1
329 nmdc:mga05p37_9846_c1
330 nmdc:mga0qj67_821_c1
331 nmdc:mga06r32_10015_c1
332 nmdc:mga08y16_11151_c1
333 nmdc:mga08y16_41552_c1
334 nmdc:mga0n895_4983_c1
335 nmdc:mga08x19_13786_c1
336 nmdc:mga08x19_45_c1
337 nmdc:mga0a205_15636_c1
338 Ga0495619_0007569
339 Ga0501084_0000186
340 Ga0501082_0014273
341 Ga0530510_0014261
342 2528203787
343 2528213508
344 2546948083
345 2579748795
346 2579853108
347 2586062692
348 2619855885
349 2620348327
350 2626635376
351 2686541676
352 2710604260
353 2774864697
354 2809588132
355 2866615047
356 2891401020
357 2891562546
358 2899366906
359 2899372193
360 2915773653
361 2917741783
362 637880824
363 8003317922
364 8054915350

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13607

Succ_CoA_lig

Succinyl-CoA ligase like flavodoxin domain

353

490

0.99

PF02629

CoA_binding

CoA binding domain

207

299

0.97

PF13549

ATP-grasp_5

ATP-grasp domain

682

871

0.97

PF13380

CoA_binding_2

CoA binding domain

209

336

0.96

PF19045

Ligase_CoA_2

Ligase-CoA domain

501

659

0.83

PF00583

Acetyltransf_1

Acetyltransferase (GNAT) family

44

163

0.78

PF13302

Acetyltransf_3

Acetyltransferase (GNAT) domain

18

164

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u5y-assembly1.cif.gz_A crystal structure of the complex between the gnat domain of s. lividans pat and the acetyl-coa synthetase c-terminal domain of s. enterica 0.9205 18 179
4xym-assembly1.cif.gz_B ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a synthetase 1 in complex with coenzyme a, ca-ampcp and hgcl+ 0.9165 675 904
4xz3-assembly1.cif.gz_D ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a synthetase 1 (se-met derivative) in complex with coenzyme a and mg-amppcp, phosphohistidine segment pointing towards nucleotide binding site 0.9095 675 904
2csu-assembly1.cif.gz_A crystal structure of ph0766 from pyrococcus horikoshii ot3 0.9078 202 659
3q9u-assembly2.cif.gz_B in silico and in vitro co-evolution of a high affinity complementary protein-protein interface 0.9064 209 295
ID Description Score Start End Superfamily
4xymA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9743 202 329 3.40.50.720
af_P76594_4_125_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.965 202 329 3.40.50.720
2csuB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9573 208 329 3.40.50.720
af_Q8IL89_36_165_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9522 201 329 3.40.50.720
4xymA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9449 202 329 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A6B3ETD3-F1-model_v4 Acyl-CoA synthetase 0.9802 256 431
AF-A0A7J4P0J4-F1-model_v4 CoA-binding protein 0.9793 203 335
AF-A0A3M1HXW1-F1-model_v4 CoA-binding domain-containing protein 0.9784 202 329
AF-A0A7V5K5W9-F1-model_v4 CoA-binding domain-containing protein 0.9761 202 323
AF-A0A257SNV2-F1-model_v4 deleted 0.9733 202 357

Map