F279331

General Info

Members Datasets Scaffolds Average Seq Length
182 125 365 320

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10000747|Ga0307515_1000074721
Length 349
Sequence MCLYPHIKYCYYFNKKLLDPFTMREPLFIKQNSARWKSYETDPARDPDELAERFITITDDLAYAKTFYPKSKTTVYLNGLAAGFHQSIYKNKKEKANRFIFFWQMELPLLFVQYRRQLLYSFIFFITFFLIGILSSKYDRNFIRLILGDDYVNMTNENISKGDPFGVYKSQNEFLMFWQIAKNNLQVTAITFVAGITLSAGTMYLLFKNGIMVGCFQYLFIAQGLGIKSVMVIWIHGTLEISTIILAGAAGLIMGNSILFPKTFSRAVSLKKGALDGIKIMLGISPIVVTAAIFESFITRRTEMPIWLSISILTGSFLFIIWYVVIYPAYLSYNLKTTANTNEGENRAK

Samples

Sample ID Description Type Environment
1 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
4 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
5 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
12 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
15 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
28 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
36 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
37 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
38 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
39 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
40 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
41 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
42 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
43 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
44 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
61 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
62 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
63 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
70 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
74 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
75 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
78 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
87 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
88 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
89 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
94 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
95 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
96 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
97 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
98 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
99 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
100 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
101 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
102 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
103 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
104 2738541278 Niastella sp. CF465 Isolate Unclassified
105 2738541283 Pedobacter sp. OK701 Isolate Unclassified
106 2738541284 Pedobacter sp. YR016 Isolate Unclassified
107 2738541302 Pedobacter sp. CF074 Isolate Unclassified
108 2738543023 Pedobacter sp. OK628 Isolate Unclassified
109 2739367651 Pedobacter sp. OK291 Isolate Unclassified
110 2739367656 Pedobacter sp. CF523 Isolate Unclassified
111 2739367663 Pedobacter sp. YR510 Isolate Unclassified
112 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
113 2818991437 Pedobacter terrae 518 Isolate Unclassified
114 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
115 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
116 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
117 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
118 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
119 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
120 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
121 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
122 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
123 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
124 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
125 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.36
Metatranscriptomes 0
Isolates 12.64

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.09
Nodule 0
Rhizoplane 0
Rhizosphere 71.98
Stem 0
Stem Tuber 0
Unclassified 2.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307515_10000747 3300028794 Bacteria 75231
2 SwRhRL2b_contig_2276363 2162886007 Bacteria 13156
3 JGI25157J39369_1005748 3300002741 Bacteria 1970
4 JGI25152J39213_1000054 3300002773 Bacteria 76796
5 JGI25150J39212_1000003 3300002774 Bacteria 508651
6 JGI25150J39212_1000004 3300002774 Bacteria 417320
7 JGI25151J46595_10000002 3300003187 Bacteria 731381
8 JGI25153J46596_10000015 3300003215 Bacteria 289820
9 rootH2_10143988 3300003320 Unclassified 2717
10 rootL2_10136974 3300003322 Bacteria 5292
11 rootL2_10156444 3300003322 Bacteria 8320
12 rootH1_10009908 3300003323 Bacteria 24135
13 rootH1_10045760 3300003316 Bacteria 11183
14 rootH1_10045760 3300003323 Bacteria 5061
15 rootH1_10122049 3300003323 Bacteria 9449
16 Ga0055536_1000006 3300003781 Bacteria 347733
17 Ga0055530_10000679 3300003791 Bacteria 28914
18 Ga0065714_10064558 3300005288 Bacteria 36374
19 Ga0065714_10064803 3300005288 Bacteria 18319
20 Ga0065714_10073366 3300005288 Bacteria 3198
21 Ga0065714_10098641 3300005288 Bacteria 1706
22 Ga0065704_10000670 3300005289 Bacteria 14748
23 Ga0070660_100249762 3300005339 Bacteria 1446
24 Ga0070663_100002213 3300005455 Bacteria 10879
25 Ga0068855_100124184 3300005563 Bacteria 2953
26 Ga0068855_100236525 3300005563 Bacteria 2043
27 Ga0068855_100415041 3300005563 Bacteria 1473
28 Ga0068855_100456974 3300005563 Bacteria 1393
29 Ga0068855_100590083 3300005563 Bacteria 1199
30 Ga0068856_100087934 3300005614 Bacteria 3089
31 Ga0068856_100121172 3300005614 Unclassified 2617
32 Ga0068859_100197715 3300005617 Bacteria 2095
33 Ga0075366_10000587 3300006195 Bacteria 17036
34 Ga0105244_10005960 3300009036 Bacteria 7988
35 Ga0105240_10007681 3300009093 Bacteria 15609
36 Ga0105240_10007744 3300009093 Bacteria 15536
37 Ga0105240_10009517 3300009093 Bacteria 13755
38 Ga0105240_10179622 3300009093 Bacteria 2499
39 Ga0105241_10030973 3300009174 Bacteria 4001
40 Ga0105241_10060472 3300009174 Bacteria 2915
41 Ga0105237_10001478 3300009545 Bacteria 30966
42 Ga0105237_10001876 3300009545 Bacteria 26824
43 Ga0105237_10006880 3300009545 Bacteria 12533
44 Ga0105237_10036511 3300009545 Bacteria 4973
45 Ga0105237_10058074 3300009545 Bacteria 3872
46 Ga0105249_10337058 3300009553 Bacteria 1524
47 Ga0105239_10000017 3300010375 Bacteria 290760
48 Ga0105239_10001486 3300010375 Bacteria 31166
49 Ga0105239_10047488 3300010375 Bacteria 4705
50 Ga0157373_10000262 3300013100 Bacteria 42799
51 Ga0157373_10000841 3300013100 Bacteria 23824
52 Ga0157371_10000025 3300013102 Bacteria 279746
53 Ga0157371_10003580 3300013102 Bacteria 14001
54 Ga0157371_10003607 3300013102 Bacteria 13949
55 Ga0157370_10000383 3300013104 Bacteria 55670
56 Ga0157370_10002681 3300013104 Bacteria 21338
57 Ga0157370_10022023 3300013104 Bacteria 6345
58 Ga0157370_10031196 3300013104 Bacteria 5216
59 Ga0157369_10000164 3300013105 Bacteria 94229
60 Ga0157369_10001079 3300013105 Bacteria 34142
61 Ga0157374_10014760 3300013296 Bacteria 6839
62 Ga0157374_10123411 3300013296 Bacteria 2502
63 Ga0157374_10180295 3300013296 Bacteria 2063
64 Ga0163162_10000065 3300013306 Bacteria 102191
65 Ga0163162_10004456 3300013306 Bacteria 13495
66 Ga0163162_10032489 3300013306 Bacteria 5185
67 Ga0157372_10000039 3300013307 Bacteria 165839
68 Ga0157372_10128539 3300013307 Bacteria 2914
69 Ga0157375_10003754 3300013308 Bacteria 13173
70 Ga0157375_10020619 3300013308 Bacteria 6025
71 Ga0182008_10000002 3300014497 Bacteria 480216
72 Ga0182008_10000073 3300014497 Bacteria 78212
73 Ga0182008_10000601 3300014497 Bacteria 26469
74 Ga0182006_1000351 3300015261 Bacteria 38720
75 Ga0182006_1000546 3300015261 Bacteria 28457
76 Ga0182006_1002191 3300015261 Bacteria 10827
77 Ga0182006_1002306 3300015261 Bacteria 10505
78 Ga0182006_1034567 3300015261 Bacteria 2021
79 Ga0182007_10000005 3300015262 Bacteria 442702
80 Ga0183373_1002 3300015682 Bacteria 990153
81 Ga0163161_10000135 3300017792 Bacteria 69859
82 Ga0163161_10000539 3300017792 Bacteria 30832
83 Ga0163161_10000837 3300017792 Bacteria 24003
84 Ga0213872_10004533 3300021361 Bacteria 7353
85 Ga0207425_1000003 3300025245 Bacteria 1145342
86 Ga0209026_1000201 3300025250 Bacteria 82838
87 Ga0209129_1000014 3300025258 Bacteria 509018
88 Ga0209455_1001587 3300025272 Bacteria 10013
89 Ga0209676_1000039 3300025292 Bacteria 443158
90 Ga0209025_1000007 3300025294 Bacteria 1145109
91 Ga0209758_1000012 3300025297 Bacteria 949866
92 Ga0209050_1000033 3300025298 Bacteria 442615
93 Ga0207655_1026945 3300025728 Bacteria 2749
94 Ga0207647_10049736 3300025904 Bacteria 2599
95 Ga0207647_10076598 3300025904 Bacteria 2012
96 Ga0207654_10032705 3300025911 Bacteria 2877
97 Ga0207695_10012032 3300025913 Bacteria 10407
98 Ga0207695_10013723 3300025913 Bacteria 9640
99 Ga0207695_10062476 3300025913 Unclassified 3844
100 Ga0207695_10201014 3300025913 Bacteria 1907
101 Ga0207695_10242210 3300025913 Unclassified 1704
102 Ga0207671_10001012 3300025914 Bacteria 34397
103 Ga0207671_10004572 3300025914 Bacteria 13146
104 Ga0207671_10035964 3300025914 Bacteria 3672
105 Ga0207657_10050081 3300025919 Bacteria 3636
106 Ga0207669_10055840 3300025937 Bacteria 2394
107 Ga0207667_10208049 3300025949 Bacteria 2006
108 Ga0207667_10349988 3300025949 Bacteria 1507
109 Ga0207667_10417081 3300025949 Bacteria 1366
110 Ga0207678_10015155 3300026067 Bacteria 6780
111 Ga0207702_10144119 3300026078 Bacteria 2159
112 Ga0207674_10182445 3300026116 Bacteria 2050
113 Ga0316177_1200150 3300030731 Bacteria 4495
114 Ga0316176_1210989 3300030732 Bacteria 4580
115 Ga0316183_1044693 3300030742 Bacteria 20720
116 Ga0316181_1178176 3300030744 Bacteria 10532
117 Ga0307405_10000009 3300031731 Bacteria 259388
118 Ga0307407_10000001 3300031903 Bacteria 570048
119 Ga0307412_10000050 3300031911 Bacteria 151527
120 Ga0307416_100000026 3300032002 Bacteria 172622
121 Ga0307414_10001140 3300032004 Bacteria 13601
122 Ga0307414_10001649 3300032004 Bacteria 11609
123 Ga0307414_10015760 3300032004 Bacteria 4573
124 Ga0307507_10002469 3300033179 Bacteria 38697
125 Ga0307510_10005553 3300033180 Bacteria 15031
126 Ga0395899_0001025 3300037312 Bacteria 25492
127 Ga0395900_0002655 3300037418 Bacteria 19541
128 Ga0395900_0008565 3300037418 Bacteria 10516
129 Ga0395905_0001588 3300037471 Bacteria 27060
130 Ga0395901_0000565 3300038443 Bacteria 42982
131 Ga0400484_37341 3300038725 Bacteria 1844
132 Ga0436361_1026784 3300039447 Bacteria 12771
133 Ga0451841_0412151 3300041498 Bacteria 1443
134 Ga0466969_0000728 3300044656 Bacteria 17782
135 Ga0466972_0000348 3300044658 Bacteria 25310
136 Ga0466966_0002402 3300044684 Bacteria 12225
137 Ga0466961_0084933 3300044693 Bacteria 2002
138 Ga0466971_0047545 3300044719 Bacteria 1929
139 Ga0466957_0000134 3300044842 Bacteria 31410
140 Ga0466959_0030257 3300045049 Bacteria 4010
141 Ga0466958_0010817 3300045836 Bacteria 5123
142 Ga0495651_0047210 3300046462 Bacteria 3331
143 Ga0495606_0024077 3300046507 Bacteria 4399
144 Ga0495606_0039107 3300046507 Bacteria 3202
145 Ga0495610_0000048 3300046512 Bacteria 150249
146 Ga0495610_0000501 3300046512 Bacteria 39971
147 Ga0495663_0022625 3300046525 Bacteria 1817
148 Ga0495625_0001164 3300046660 Bacteria 33874
149 Ga0495687_007778 3300047443 Bacteria 6241
150 Ga0495686_0203209 3300047472 Bacteria 1136
151 Ga0496122_0007035 3300048925 Bacteria 12647
152 Ga0496123_0007090 3300048926 Bacteria 10653
153 Ga0501241_000306 3300049758 Bacteria 10693
154 nmdc:mga0k408_475_c1 3300050493 Bacteria 21995
155 Ga0500583_0025087 3300053092 Bacteria 2540
156 Ga0500651_0000520 3300053093 Bacteria 19809
157 Ga0500618_000202 3300053125 Bacteria 47506
158 Ga0500658_0108182 3300053134 Bacteria 1221
159 Ga0500588_0015529 3300053146 Bacteria 1952
160 Ga0500622_0017616 3300053156 Bacteria 3802
161 2586206679 2585427687 Bacteria 5544917
162 2738730509 2738541278 Bacteria 9755573
163 2738759076 2738541283 Bacteria 7222293
164 2738761811 2738541284 Bacteria 5199923
165 2738854985 2738541302 Bacteria 5944758
166 2739302278 2738543023 Bacteria 6767879
167 2739586907 2739367651 Bacteria 6359826
168 2739614872 2739367656 Bacteria 5152243
169 2739646240 2739367663 Bacteria 5040914
170 2776615543 2775506987 Bacteria 5373360
171 2819547364 2818991437 Bacteria 5805520
172 2842727649 2842722452 Bacteria 6263924
173 2842907331 2842903701 Bacteria 6986368
174 2842911146 2842909656 Bacteria 6185908
175 2849283100 2849281842 Bacteria 6065644
176 2852631060 2852627209 Bacteria 5896285
177 2857631916 2857627736 Bacteria 5625397
178 2902049592 2902048731 Bacteria 4976191
179 2904447831 2904445276 Bacteria 5310396
180 2919190731 2919186247 Bacteria 6244071
181 2939669059 2939664404 Bacteria 6364494
182 2945997742 2945997725 Bacteria 6404843
183 2954020195 2954016120 Bacteria 6446024
184 Ga0307515_10000747
185 SwRhRL2b_contig_2276363
186 JGI25157J39369_1005748
187 JGI25152J39213_1000054
188 JGI25150J39212_1000003
189 JGI25150J39212_1000004
190 JGI25151J46595_10000002
191 JGI25153J46596_10000015
192 rootH2_10143988
193 rootL2_10136974
194 rootL2_10156444
195 rootH1_10009908
196 rootH1_10045760
197 rootH1_10122049
198 Ga0055536_1000006
199 Ga0055530_10000679
200 Ga0065714_10064558
201 Ga0065714_10064803
202 Ga0065714_10073366
203 Ga0065714_10098641
204 Ga0065704_10000670
205 Ga0070660_100249762
206 Ga0070663_100002213
207 Ga0068855_100124184
208 Ga0068855_100236525
209 Ga0068855_100415041
210 Ga0068855_100456974
211 Ga0068855_100590083
212 Ga0068856_100087934
213 Ga0068856_100121172
214 Ga0068859_100197715
215 Ga0075366_10000587
216 Ga0105244_10005960
217 Ga0105240_10007681
218 Ga0105240_10007744
219 Ga0105240_10009517
220 Ga0105240_10179622
221 Ga0105241_10030973
222 Ga0105241_10060472
223 Ga0105237_10001478
224 Ga0105237_10001876
225 Ga0105237_10006880
226 Ga0105237_10036511
227 Ga0105237_10058074
228 Ga0105249_10337058
229 Ga0105239_10000017
230 Ga0105239_10001486
231 Ga0105239_10047488
232 Ga0157373_10000262
233 Ga0157373_10000841
234 Ga0157371_10000025
235 Ga0157371_10003580
236 Ga0157371_10003607
237 Ga0157370_10000383
238 Ga0157370_10002681
239 Ga0157370_10022023
240 Ga0157370_10031196
241 Ga0157369_10000164
242 Ga0157369_10001079
243 Ga0157374_10014760
244 Ga0157374_10123411
245 Ga0157374_10180295
246 Ga0163162_10000065
247 Ga0163162_10004456
248 Ga0163162_10032489
249 Ga0157372_10000039
250 Ga0157372_10128539
251 Ga0157375_10003754
252 Ga0157375_10020619
253 Ga0182008_10000002
254 Ga0182008_10000073
255 Ga0182008_10000601
256 Ga0182006_1000351
257 Ga0182006_1000546
258 Ga0182006_1002191
259 Ga0182006_1002306
260 Ga0182006_1034567
261 Ga0182007_10000005
262 Ga0183373_1002
263 Ga0163161_10000135
264 Ga0163161_10000539
265 Ga0163161_10000837
266 Ga0213872_10004533
267 Ga0207425_1000003
268 Ga0209026_1000201
269 Ga0209129_1000014
270 Ga0209455_1001587
271 Ga0209676_1000039
272 Ga0209025_1000007
273 Ga0209758_1000012
274 Ga0209050_1000033
275 Ga0207655_1026945
276 Ga0207647_10049736
277 Ga0207647_10076598
278 Ga0207654_10032705
279 Ga0207695_10012032
280 Ga0207695_10013723
281 Ga0207695_10062476
282 Ga0207695_10201014
283 Ga0207695_10242210
284 Ga0207671_10001012
285 Ga0207671_10004572
286 Ga0207671_10035964
287 Ga0207657_10050081
288 Ga0207669_10055840
289 Ga0207667_10208049
290 Ga0207667_10349988
291 Ga0207667_10417081
292 Ga0207678_10015155
293 Ga0207702_10144119
294 Ga0207674_10182445
295 Ga0316177_1200150
296 Ga0316176_1210989
297 Ga0316183_1044693
298 Ga0316181_1178176
299 Ga0307405_10000009
300 Ga0307407_10000001
301 Ga0307412_10000050
302 Ga0307416_100000026
303 Ga0307414_10001140
304 Ga0307414_10001649
305 Ga0307414_10015760
306 Ga0307507_10002469
307 Ga0307510_10005553
308 Ga0395899_0001025
309 Ga0395900_0002655
310 Ga0395900_0008565
311 Ga0395905_0001588
312 Ga0395901_0000565
313 Ga0400484_37341
314 Ga0436361_1026784
315 Ga0451841_0412151
316 Ga0466969_0000728
317 Ga0466972_0000348
318 Ga0466966_0002402
319 Ga0466961_0084933
320 Ga0466971_0047545
321 Ga0466957_0000134
322 Ga0466959_0030257
323 Ga0466958_0010817
324 Ga0495651_0047210
325 Ga0495606_0024077
326 Ga0495606_0039107
327 Ga0495610_0000048
328 Ga0495610_0000501
329 Ga0495663_0022625
330 Ga0495625_0001164
331 Ga0495687_007778
332 Ga0495686_0203209
333 Ga0496122_0007035
334 Ga0496123_0007090
335 Ga0501241_000306
336 nmdc:mga0k408_475_c1
337 Ga0500583_0025087
338 Ga0500651_0000520
339 Ga0500618_000202
340 Ga0500658_0108182
341 Ga0500588_0015529
342 Ga0500622_0017616
343 2586206679
344 2738730509
345 2738759076
346 2738761811
347 2738854985
348 2739302278
349 2739586907
350 2739614872
351 2739646240
352 2776615543
353 2819547364
354 2842727649
355 2842907331
356 2842911146
357 2849283100
358 2852631060
359 2857631916
360 2902049592
361 2904447831
362 2919190731
363 2939669059
364 2945997742
365 2954020195

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01944

SpoIIM

Stage II sporulation protein M

121

300

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6c0f-assembly1.cif.gz_h yeast nucleolar pre-60s ribosomal subunit (state 2) 0.7995 33 85
5apn-assembly1.cif.gz_h structure of the yeast 60s ribosomal subunit in complex with arx1, alb1 and n-terminally tagged rei1 0.7444 26 85
7q0f-assembly1.cif.gz_AI structure of candida albicans 80s ribosome in complex with phyllanthoside 0.6878 23 86
7of1-assembly1.cif.gz_h nog1-tap associated immature ribosomal particle population a from s. cerevisiae 0.662 23 85
4bem-assembly1.cif.gz_J crystal structure of the f-type atp synthase c-ring from acetobacterium woodii. 0.461 157 318
ID Description Score Start End Superfamily
4dmwA01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.6914 14 82 1.20.58.1190
2vkdC01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.6619 24 82 1.20.58.1190
4hwcA00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;BAG domain 0.6469 13 78 1.20.58.120
af_O69662_1_106_1.20.120.330 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Nucleotidyltransferases 0.6133 13 103 1.20.120.330
4dmwA01 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.5874 14 82 1.20.58.1190
ID Description Score Start End GO Terms
AF-A0A520B1X1-F1-model_v4 Stage II sporulation protein M 0.9928 114 323 GO:0016020
AF-A0A4Q3AW38-F1-model_v4 Stage II sporulation protein M 0.9871 78 327 GO:0016020
AF-A0A4Q3SK05-F1-model_v4 Stage II sporulation protein M 0.9859 94 325 GO:0016020
AF-A0A519N1D4-F1-model_v4 Stage II sporulation protein M 0.9831 84 327 GO:0016020
AF-A0A0M3CFY5-F1-model_v4 deleted 0.9826 107 323

Map