F280683

General Info

Members Datasets Scaffolds Average Seq Length
183 113 366 590

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100199472|Ga0075431_1001994721
Length 638
Sequence LALVARVIRPVHFTAADLPLIHEDRVKEIARTRTVCPIPCRYGPSELVKPQRRKFKREREDNSMLKTHNCGELRLSHVGQKVVLAGWLHKRRDHGGLIFLDLRPATGDAHAVAEKARSEFVLKIEGNIRPRPEALINPNLATGEIEVVAQSIEILNPAKAPPIPIDDEGYKTEESQRLKYRYLDLRRSRLQNNLMLRHKTIKFIRDYLDQRGFIEIETPMMIKSTPEGARDYVVPSRLQQGKFFALPQSPQQLKQLLMVAGYERYFQIARCMRDEDLRGDRQPEFTQLDLEMSFVEREDVLALVEGLVTELIPAVTPHKRIFTPFPKLSYSESMARFGTDKPDLRFGIEIVDATDALRESQLKAFSDALARGGVVKAIAAPGCAGYSRREIDILTELVKAAGARGMATLAWTTEGVKGSAAKFLNETEINEVRRRFEAREGDLICLVADKDPVALKALGNLRLWFRDRLALASPDLLAFAWIIDFPMFEWDEQAQRWSFAHHPFTMPREEHLDRLETDPGSVLSNAYDLVCNGYELSSGSIRIHRRDVQSMIFKSLGYSEEDAYRRFGHMLDAFEFGAPPHGGMAPGIDRLVMLLADEPNIREVIAFPKTANASDLMFDAPSPLDPAHLRELHLKIVE

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
35 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
36 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028017 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
53 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
54 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
55 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
56 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
59 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
60 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
61 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
62 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
67 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
68 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
71 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
72 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
78 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
79 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
80 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
85 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
86 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
89 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
90 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
91 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
92 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
93 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
103 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
104 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
113 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.08
Metatranscriptomes 4.92
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.64
Rhizosphere 90.16
Stem 0
Stem Tuber 0
Unclassified 0.55

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100199472 3300006847 Bacteria 2048
2 rootH1_10261175 3300003323 Bacteria 11890
3 Ga0065712_10069036 3300005290 Bacteria 8223
4 Ga0070658_10001611 3300005327 Bacteria 19091
5 Ga0070683_100028287 3300005329 Bacteria 5066
6 Ga0070670_100145435 3300005331 Bacteria 2051
7 Ga0070682_100056710 3300005337 Bacteria 2465
8 Ga0070691_10002719 3300005341 Bacteria 7872
9 Ga0070709_10000594 3300005434 Bacteria 21136
10 Ga0070713_100000996 3300005436 Bacteria 18143
11 Ga0070708_100003265 3300005445 Bacteria 12659
12 Ga0070708_100087363 3300005445 Bacteria 2833
13 Ga0070707_100001433 3300005468 Bacteria 23347
14 Ga0070707_100017050 3300005468 Bacteria 6822
15 Ga0070707_100025316 3300005468 Bacteria 5628
16 Ga0070707_100071183 3300005468 Bacteria 3350
17 Ga0070707_100195728 3300005468 Bacteria 1971
18 Ga0070698_100037240 3300005471 Bacteria 5017
19 Ga0070698_100049325 3300005471 Bacteria 4297
20 Ga0070699_100007893 3300005518 Bacteria 9250
21 Ga0070679_100015733 3300005530 Bacteria 7276
22 Ga0070684_100121014 3300005535 Bacteria 2355
23 Ga0070697_100019724 3300005536 Bacteria 5327
24 Ga0068855_100000687 3300005563 Bacteria 41298
25 Ga0068857_100081856 3300005577 Bacteria 2883
26 Ga0068862_100106611 3300005844 Bacteria 2457
27 Ga0070717_10010252 3300006028 Bacteria 7061
28 Ga0070717_10050939 3300006028 Bacteria 3405
29 Ga0075428_100014522 3300006844 Bacteria 8748
30 Ga0075428_100022746 3300006844 Bacteria 6936
31 Ga0075430_100021257 3300006846 Bacteria 5518
32 Ga0075431_100004154 3300006847 Bacteria 14145
33 Ga0075431_100021690 3300006847 Bacteria 6567
34 Ga0075431_100029948 3300006847 Bacteria 5605
35 Ga0075431_100032754 3300006847 Bacteria 5357
36 Ga0075431_100110030 3300006847 Bacteria 2844
37 Ga0075429_100039393 3300006880 Bacteria 4113
38 Ga0105240_10053757 3300009093 Bacteria 5052
39 Ga0105240_10081256 3300009093 Bacteria 3983
40 Ga0111539_10016238 3300009094 Bacteria 9235
41 Ga0114129_10006751 3300009147 Bacteria 16294
42 Ga0114129_10031466 3300009147 Bacteria 7500
43 Ga0114129_10083802 3300009147 Bacteria 4426
44 Ga0114129_10144783 3300009147 Bacteria 3256
45 Ga0105248_10161045 3300009177 Bacteria 2531
46 Ga0105239_10029326 3300010375 Bacteria 6049
47 Ga0157374_10027975 3300013296 Bacteria 5090
48 Ga0157374_10031561 3300013296 Bacteria 4817
49 Ga0157380_10046148 3300014326 Bacteria 3421
50 Ga0206352_10194208 3300020078 Bacteria 4472
51 Ga0206350_11351219 3300020080 Bacteria 5744
52 Ga0213874_10000024 3300021377 Bacteria 19673
53 Ga0213874_10002032 3300021377 Bacteria 4277
54 Ga0213875_10001336 3300021388 Bacteria 16230
55 Ga0207699_10000154 3300025906 Bacteria 43949
56 Ga0207705_10001175 3300025909 Bacteria 21261
57 Ga0207684_10009726 3300025910 Bacteria 8477
58 Ga0207684_10010993 3300025910 Bacteria 7936
59 Ga0207707_10032148 3300025912 Bacteria 4594
60 Ga0207695_10030063 3300025913 Bacteria 5987
61 Ga0207695_10135899 3300025913 Bacteria 2411
62 Ga0207652_10018346 3300025921 Bacteria 5737
63 Ga0207652_10068183 3300025921 Bacteria 3086
64 Ga0207646_10001258 3300025922 Bacteria 31742
65 Ga0207646_10047048 3300025922 Bacteria 3870
66 Ga0207700_10000258 3300025928 Bacteria 31617
67 Ga0207670_10045455 3300025936 Bacteria 2911
68 Ga0207667_10000161 3300025949 Bacteria 98927
69 Ga0207674_10006809 3300026116 Bacteria 13410
70 Ga0207674_10008841 3300026116 Bacteria 11587
71 Ga0209998_10002888 3300027717 Bacteria 3853
72 Ga0209974_10010373 3300027876 Unclassified 3144
73 Ga0265356_1000332 3300028017 Bacteria 8678
74 Ga0268266_10126473 3300028379 Bacteria 2282
75 Ga0268265_10033577 3300028380 Bacteria 3732
76 Ga0265318_10017071 3300028577 Bacteria 2986
77 Ga0265770_1002512 3300030878 Bacteria 2488
78 Ga0265760_10011119 3300031090 Bacteria 2571
79 Ga0265316_10085633 3300031344 Bacteria 2411
80 Ga0316579_10025937 3300031691 Bacteria 2649
81 Ga0265342_10022154 3300031712 Bacteria 4044
82 Ga0316576_10001994 3300031727 Bacteria 11423
83 Ga0316576_10006326 3300031727 Bacteria 7360
84 Ga0316578_10005652 3300031728 Bacteria 6087
85 Ga0316578_10020167 3300031728 Bacteria 3680
86 Ga0316577_10005560 3300031733 Bacteria 6615
87 Ga0316577_10010500 3300031733 Bacteria 5002
88 Ga0316583_10007332 3300032133 Bacteria 3972
89 Ga0316593_10002187 3300032168 Bacteria 4568
90 Ga0316592_1006819 3300033524 Bacteria 2212
91 Ga0316588_1007185 3300033528 Bacteria 2255
92 Ga0316596_1001009 3300033541 Bacteria 5418
93 Ga0316596_1005254 3300033541 Bacteria 2952
94 Ga0316574_0000098 3300035398 Bacteria 25222
95 Ga0316574_0024144 3300035398 Bacteria 3636
96 Ga0316574_0049343 3300035398 Bacteria 2617
97 Ga0316574_0053374 3300035398 Bacteria 2523
98 Ga0316574_0096136 3300035398 Bacteria 1893
99 Ga0316582_0037705 3300036647 Bacteria 2998
100 Ga0316584_0002094 3300036712 Bacteria 12495
101 Ga0316584_0004606 3300036712 Bacteria 9140
102 Ga0316584_0010952 3300036712 Bacteria 6353
103 Ga0316584_0014817 3300036712 Bacteria 5568
104 Ga0316584_0017542 3300036712 Bacteria 5150
105 Ga0316584_0078466 3300036712 Bacteria 2473
106 Ga0436364_0178986 3300037853 Bacteria 20169
107 Ga0436364_0259299 3300037853 Bacteria 33836
108 Ga0400489_16267 3300039093 Bacteria 60904
109 Ga0436365_0660337 3300039437 Bacteria 27479
110 Ga0436365_1010343 3300039437 Bacteria 6450
111 Ga0436365_1759140 3300039437 Bacteria 18596
112 Ga0436360_0122252 3300039438 Bacteria 3223
113 Ga0436360_0311146 3300039438 Bacteria 6329
114 Ga0436361_0471448 3300039447 Bacteria 2327
115 Ga0436363_0650363 3300039450 Bacteria 2678
116 Ga0436363_0884044 3300039450 Bacteria 5993
117 Ga0436363_1268093 3300039450 Bacteria 26237
118 Ga0436363_1694319 3300039450 Bacteria 4716
119 Ga0436362_0934717 3300039453 Bacteria 3582
120 Ga0451577_0000125 3300042876 Bacteria 169053
121 Ga0451577_0000141 3300042876 Bacteria 161372
122 Ga0451577_0001009 3300042876 Bacteria 40997
123 Ga0451577_0021969 3300042876 Bacteria 5831
124 Ga0451577_0028229 3300042876 Bacteria 5077
125 Ga0466969_0023365 3300044656 Bacteria 3187
126 Ga0466972_0002014 3300044658 Bacteria 9951
127 Ga0453683_0000007 3300044673 Bacteria 581341
128 Ga0453683_0000580 3300044673 Bacteria 40538
129 Ga0453683_0000794 3300044673 Bacteria 31107
130 Ga0466966_0022526 3300044684 Bacteria 4133
131 Ga0466961_0055236 3300044693 Bacteria 2532
132 Ga0466963_0039591 3300044694 Bacteria 3087
133 Ga0453684_0000007 3300044712 Bacteria 1301482
134 Ga0453684_0000076 3300044712 Bacteria 437513
135 Ga0453684_0000117 3300044712 Bacteria 348119
136 Ga0453684_0000203 3300044712 Bacteria 258635
137 Ga0453684_0000463 3300044712 Bacteria 161665
138 Ga0453684_0000548 3300044712 Bacteria 142109
139 Ga0453684_0001850 3300044712 Bacteria 55234
140 Ga0453684_0046668 3300044712 Bacteria 5758
141 Ga0466968_0036133 3300044735 Bacteria 2069
142 Ga0466957_0021389 3300044842 Bacteria 3811
143 Ga0466957_0048018 3300044842 Bacteria 2594
144 Ga0466960_0001729 3300044901 Bacteria 8022
145 Ga0451576_0000058 3300045051 Bacteria 298769
146 Ga0451576_0000141 3300045051 Bacteria 183004
147 Ga0451576_0002572 3300045051 Bacteria 26732
148 Ga0466967_0003934 3300045976 Bacteria 9869
149 Ga0466967_0013547 3300045976 Bacteria 6307
150 Ga0466967_0083931 3300045976 Bacteria 2881
151 Ga0466967_0096255 3300045976 Bacteria 2700
152 Ga0466967_0100179 3300045976 Bacteria 2647
153 Ga0495582_0011582 3300046473 Bacteria 4861
154 Ga0496111_0055639 3300048914 Bacteria 2862
155 Ga0496112_0102618 3300048915 Bacteria 2830
156 Ga0496113_0116742 3300048916 Bacteria 2083
157 Ga0496125_0000649 3300048928 Bacteria 58104
158 Ga0501034_0000203 3300049571 Bacteria 112660
159 Ga0501036_0105508 3300049572 Bacteria 2383
160 Ga0501037_0007568 3300049573 Bacteria 7953
161 Ga0501040_0030723 3300049576 Bacteria 3629
162 Ga0501042_0056637 3300049578 Bacteria 2797
163 Ga0501046_0058440 3300049580 Bacteria 3023
164 Ga0501073_0048133 3300049589 Bacteria 2994
165 Ga0501074_0018535 3300049590 Bacteria 5057
166 Ga0501075_0013338 3300049591 Bacteria 5863
167 Ga0501075_0021764 3300049591 Bacteria 4677
168 Ga0501076_0060770 3300049592 Bacteria 3007
169 Ga0501077_0084705 3300049593 Bacteria 2009
170 Ga0501080_0150638 3300049742 Bacteria 2150
171 Ga0501081_0033992 3300049743 Bacteria 3467
172 Ga0501044_0000843 3300049823 Bacteria 36776
173 nmdc:mga05p37_42754_c1 3300050507 Bacteria 5569
174 nmdc:mga05p37_63697_c1 3300050507 Bacteria 4537
175 nmdc:mga06r32_3357_c1 3300050510 Bacteria 14329
176 nmdc:mga06r32_43385_c1 3300050510 Bacteria 4279
177 nmdc:mga06r32_73506_c1 3300050510 Bacteria 3312
178 nmdc:mga06r32_83871_c1 3300050510 Bacteria 3105
179 nmdc:mga06r32_88070_c1 3300050510 Bacteria 3030
180 nmdc:mga08y16_9880_c1 3300050511 Bacteria 10018
181 Ga0501084_0118184 3300054114 Bacteria 2229
182 Ga0466962_0025033 3300061719 Bacteria 2865
183 Ga0530510_0115064 3300061734 Bacteria 1971
184 Ga0075431_100199472
185 rootH1_10261175
186 Ga0065712_10069036
187 Ga0070658_10001611
188 Ga0070683_100028287
189 Ga0070670_100145435
190 Ga0070682_100056710
191 Ga0070691_10002719
192 Ga0070709_10000594
193 Ga0070713_100000996
194 Ga0070708_100003265
195 Ga0070708_100087363
196 Ga0070707_100001433
197 Ga0070707_100017050
198 Ga0070707_100025316
199 Ga0070707_100071183
200 Ga0070707_100195728
201 Ga0070698_100037240
202 Ga0070698_100049325
203 Ga0070699_100007893
204 Ga0070679_100015733
205 Ga0070684_100121014
206 Ga0070697_100019724
207 Ga0068855_100000687
208 Ga0068857_100081856
209 Ga0068862_100106611
210 Ga0070717_10010252
211 Ga0070717_10050939
212 Ga0075428_100014522
213 Ga0075428_100022746
214 Ga0075430_100021257
215 Ga0075431_100004154
216 Ga0075431_100021690
217 Ga0075431_100029948
218 Ga0075431_100032754
219 Ga0075431_100110030
220 Ga0075429_100039393
221 Ga0105240_10053757
222 Ga0105240_10081256
223 Ga0111539_10016238
224 Ga0114129_10006751
225 Ga0114129_10031466
226 Ga0114129_10083802
227 Ga0114129_10144783
228 Ga0105248_10161045
229 Ga0105239_10029326
230 Ga0157374_10027975
231 Ga0157374_10031561
232 Ga0157380_10046148
233 Ga0206352_10194208
234 Ga0206350_11351219
235 Ga0213874_10000024
236 Ga0213874_10002032
237 Ga0213875_10001336
238 Ga0207699_10000154
239 Ga0207705_10001175
240 Ga0207684_10009726
241 Ga0207684_10010993
242 Ga0207707_10032148
243 Ga0207695_10030063
244 Ga0207695_10135899
245 Ga0207652_10018346
246 Ga0207652_10068183
247 Ga0207646_10001258
248 Ga0207646_10047048
249 Ga0207700_10000258
250 Ga0207670_10045455
251 Ga0207667_10000161
252 Ga0207674_10006809
253 Ga0207674_10008841
254 Ga0209998_10002888
255 Ga0209974_10010373
256 Ga0265356_1000332
257 Ga0268266_10126473
258 Ga0268265_10033577
259 Ga0265318_10017071
260 Ga0265770_1002512
261 Ga0265760_10011119
262 Ga0265316_10085633
263 Ga0316579_10025937
264 Ga0265342_10022154
265 Ga0316576_10001994
266 Ga0316576_10006326
267 Ga0316578_10005652
268 Ga0316578_10020167
269 Ga0316577_10005560
270 Ga0316577_10010500
271 Ga0316583_10007332
272 Ga0316593_10002187
273 Ga0316592_1006819
274 Ga0316588_1007185
275 Ga0316596_1001009
276 Ga0316596_1005254
277 Ga0316574_0000098
278 Ga0316574_0024144
279 Ga0316574_0049343
280 Ga0316574_0053374
281 Ga0316574_0096136
282 Ga0316582_0037705
283 Ga0316584_0002094
284 Ga0316584_0004606
285 Ga0316584_0010952
286 Ga0316584_0014817
287 Ga0316584_0017542
288 Ga0316584_0078466
289 Ga0436364_0178986
290 Ga0436364_0259299
291 Ga0400489_16267
292 Ga0436365_0660337
293 Ga0436365_1010343
294 Ga0436365_1759140
295 Ga0436360_0122252
296 Ga0436360_0311146
297 Ga0436361_0471448
298 Ga0436363_0650363
299 Ga0436363_0884044
300 Ga0436363_1268093
301 Ga0436363_1694319
302 Ga0436362_0934717
303 Ga0451577_0000125
304 Ga0451577_0000141
305 Ga0451577_0001009
306 Ga0451577_0021969
307 Ga0451577_0028229
308 Ga0466969_0023365
309 Ga0466972_0002014
310 Ga0453683_0000007
311 Ga0453683_0000580
312 Ga0453683_0000794
313 Ga0466966_0022526
314 Ga0466961_0055236
315 Ga0466963_0039591
316 Ga0453684_0000007
317 Ga0453684_0000076
318 Ga0453684_0000117
319 Ga0453684_0000203
320 Ga0453684_0000463
321 Ga0453684_0000548
322 Ga0453684_0001850
323 Ga0453684_0046668
324 Ga0466968_0036133
325 Ga0466957_0021389
326 Ga0466957_0048018
327 Ga0466960_0001729
328 Ga0451576_0000058
329 Ga0451576_0000141
330 Ga0451576_0002572
331 Ga0466967_0003934
332 Ga0466967_0013547
333 Ga0466967_0083931
334 Ga0466967_0096255
335 Ga0466967_0100179
336 Ga0495582_0011582
337 Ga0496111_0055639
338 Ga0496112_0102618
339 Ga0496113_0116742
340 Ga0496125_0000649
341 Ga0501034_0000203
342 Ga0501036_0105508
343 Ga0501037_0007568
344 Ga0501040_0030723
345 Ga0501042_0056637
346 Ga0501046_0058440
347 Ga0501073_0048133
348 Ga0501074_0018535
349 Ga0501075_0013338
350 Ga0501075_0021764
351 Ga0501076_0060770
352 Ga0501077_0084705
353 Ga0501080_0150638
354 Ga0501081_0033992
355 Ga0501044_0000843
356 nmdc:mga05p37_42754_c1
357 nmdc:mga05p37_63697_c1
358 nmdc:mga06r32_3357_c1
359 nmdc:mga06r32_43385_c1
360 nmdc:mga06r32_73506_c1
361 nmdc:mga06r32_83871_c1
362 nmdc:mga06r32_88070_c1
363 nmdc:mga08y16_9880_c1
364 Ga0501084_0118184
365 Ga0466962_0025033
366 Ga0530510_0115064

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00152

tRNA-synt_2

tRNA synthetases class II (D, K and N)

173

611

0.99

PF02938

GAD

GAD domain

365

458

0.98

PF01336

tRNA_anti-codon

OB-fold nucleic acid binding domain

82

155

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4rmf-assembly1.cif.gz_A biochemical and structural characterization of mycobacterial aspartyl-trna synthetase asps, a promising tb drug target 0.9578 11 578
5gro-assembly1.cif.gz_B crystal structure of the n-terminal anticodon-binding domain of non-discriminating aspartyl-trna synthetase from helicobacter pylori 0.9501 11 108
5w25-assembly1.cif.gz_A crystal structure of aspartyl-trna synthetase from mycobacterium tuberculosis complexed with l-aspartic acid 0.9486 10 578
4o2d-assembly1.cif.gz_A crystal structure of aspartyl-trna synthetase from mycobacterium smegmatis with bound aspartic acid 0.9466 9 582
4wj3-assembly2.cif.gz_O crystal structure of the asparagine transamidosome from pseudomonas aeruginosa 0.9449 10 584
ID Description Score Start End Superfamily
4o2dB01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9629 9 109 2.40.50.140
5groB00 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9501 11 108 2.40.50.140
1eqrB03 Alpha Beta;2-Layer Sandwich;Gyrase A; domain 2;GAD-like domain 0.9482 276 418 3.30.1360.30
1l0wB01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9443 9 111 2.40.50.140
af_I1K5N2_70_181_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9412 9 108 2.40.50.140
ID Description Score Start End GO Terms
AF-K1XUP0-F1-model_v4 Aspartate--tRNA ligase (EC 6.1.1.12) (Aspartyl-tRNA synthetase) (AspRS) 0.982 11 584 GO:0003676
GO:0004815
GO:0005524
GO:0005737
GO:0006422
AF-A0A2T4RXQ7-F1-model_v4 Aspartate--tRNA ligase (EC 6.1.1.12) 0.9798 123 254 GO:0004815
GO:0005524
GO:0005737
GO:0006422
GO:0016740
AF-A0A645BJG7-F1-model_v4 Aspartate--tRNA ligase (EC 6.1.1.12) 0.9792 74 589 GO:0004815
GO:0005524
GO:0005737
GO:0006422
AF-A0A0F9LM51-F1-model_v4 Aminoacyl-transfer RNA synthetases class-II family profile domain-containing protein 0.979 153 584 GO:0004815
GO:0005524
GO:0005737
GO:0006422
AF-A0A1V6A1T8-F1-model_v4 Aspartate--tRNA(Asp/Asn) ligase (EC 6.1.1.23) (Aspartyl-tRNA synthetase) (AspRS) (Non-discriminating aspartyl-tRNA synthetase) (ND-AspRS) 0.9775 9 584 GO:0003676
GO:0004815
GO:0005524
GO:0005737
GO:0006422
GO:0016740
GO:0050560

Map