F280890

General Info

Members Datasets Scaffolds Average Seq Length
183 134 366 920

Family's Representative Sequence

Representative Sequence 3300014326|Ga0157380_10000174|Ga0157380_1000017417
Length 1125
Sequence MRKFIYTLRRAGFFALMMLFFQWTFAQSTGTIKGNVKDVNGNPLSSATVTVEGQRAGTITDASGNYSIKISPGTYTLVITYVGASPMSYQVTVIGGATVEQNASLIVGSDLTDVVIVGSRSRQPRSKLTTVVPVDVINAREVKQFAQTDLSQILSYTAPSFQSARQTISDGTDHIDPAGLRGLGPDQTLVLLNGKRRHNSALVNINGTIGRGSVGTDMNAIPVAAIERIEVLRDGAAAQYGSDAIAGVINVVLKKTYKGLNISGTIGQNFTTMPYGGGENIQDGANGQLDFSGGWGWKNGAYINASGQWLKRENTNRSGFDNIPLIYNGNGGGLPGTAAIPPGVTANEYYRWLMDLDRSDEASRKYSRRNIVAGNSSNTNVAGFLNAGTPVTKNMSIYTTIGYSERNGQASGFSRNPNSWSQQPVLANGQRYYYDGFLPEIHTRLIDYSVIAGLKFDIGEWDLDVSDTRGTNTLRYDIEHTGNSSLPATNNVQTKFYAGSLEFLQNTINVDLGRKIDLSATRSLNIAFGGEYRYEKFSIADGEANSYINGGRQFQPDPIPPYPGTGSYFTFSPGTAVSGAQVFPGFQPTDAVKATRKIYAFYGDLEYRTRNFVLDGALRYETYDEREFNYDNLSGKLASRYDINDKIAVRASVSTGFRAPSLHQRYFQNTSTQFVAGLPSQALTANNYNPIVTDAFGVGALSPETSKSLSAGFVGRISNNFNFTVDGYFIRIDDRIVLSSQFNRTNPLVNNILNANGVDPTINALQFWTNAINTETKGVDVVLTQRFRLGAGNATLSIAGNYNHNNDLKTALFDRQQRARIEVGQPQSKVNFTFIYDLRKINFMLRTVRFGEVTQLNATDPASRNSSNGFYWNDVGLGTDQTFSPKWTTDFVFTYKACPGLNLSVGANNLFDVYPDRVFVDPRNDPNAYYNAPVSSALGVNKTTGGHNAGRDLSNRGRFLYGPNQFGYNGRYMFARISIEVFELGKCVKKPVKVVDNVDACPTVAGPKVLNGCINFNAKNVTFVTGSAKLTTQANSELDELVAIMNKYPKIGVNIDGHSDNTGTAAGNKKLSQSRADEAKKYLVSKGISEDRLTATGHGQDNPIADNKTSAGRSQNRRVEFSVRN

Samples

Sample ID Description Type Environment
1 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
11 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
12 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
13 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
14 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
19 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
39 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
40 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
41 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
42 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
43 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
44 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
45 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
46 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
47 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
48 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
55 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
70 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
71 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
72 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
73 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
74 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
75 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
76 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
77 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
80 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
81 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
85 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
86 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
87 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
88 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
89 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
90 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
97 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
98 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
99 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
100 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
101 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
102 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
103 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
104 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
105 3300049770 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_B_4_control Metagenome Rhizosphere
106 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
107 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
108 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
109 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
110 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
111 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
112 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
113 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
114 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
115 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
116 2738541278 Niastella sp. CF465 Isolate Unclassified
117 2738541302 Pedobacter sp. CF074 Isolate Unclassified
118 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
119 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
120 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
121 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
122 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
123 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
124 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
125 2896109856 Chitinophaga sp. SYP-B3965 Isolate Rhizosphere
126 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
127 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
128 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
129 2914759650 Rhizosphaericola mali Isolate Rhizosphere
130 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
131 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
132 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
133 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
134 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.07
Metatranscriptomes 0
Isolates 10.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.32
Nodule 0
Rhizoplane 0
Rhizosphere 55.74
Stem 0
Stem Tuber 0
Unclassified 1.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157380_10000174 3300014326 Bacteria 37217
2 JGI24740J21852_10013248 3300001979 Bacteria 3083
3 JGI24739J22299_10011306 3300001989 Bacteria 3296
4 JGI25162J39368_1000011 3300002737 Bacteria 379156
5 JGI25154J39366_1000007 3300002738 Bacteria 335932
6 JGI25154J39366_1000008 3300002738 Bacteria 315375
7 JGI25153J46596_10001267 3300003215 Bacteria 15175
8 rootH2_10018452 3300003320 Bacteria 5148
9 rootL2_10014855 3300003322 Bacteria 10663
10 rootL2_10253783 3300003322 Bacteria 5830
11 rootH1_10015461 3300003323 Bacteria 18908
12 rootH1_10109117 3300003323 Bacteria 9438
13 JGI25160J50197_1000450 3300003354 Bacteria 25674
14 JGI25160J50197_1007604 3300003354 Bacteria 4224
15 Ga0055526_1008083 3300003771 Bacteria 5307
16 Ga0055524_1000030 3300003775 Bacteria 187756
17 Ga0055528_1000345 3300003790 Bacteria 38441
18 Ga0055528_1001109 3300003790 Bacteria 17671
19 Ga0055530_10000521 3300003791 Bacteria 33319
20 Ga0055530_10000920 3300003791 Bacteria 24141
21 Ga0055530_10009182 3300003791 Bacteria 3839
22 Ga0055531_10000220 3300003794 Bacteria 62906
23 Ga0055531_10001203 3300003794 Bacteria 19846
24 Ga0055531_10002923 3300003794 Bacteria 11124
25 Ga0065165_1000632 3300005262 Bacteria 51019
26 Ga0065165_1005993 3300005262 Bacteria 6558
27 Ga0065165_1007825 3300005262 Bacteria 5144
28 Ga0070670_100012411 3300005331 Bacteria 7291
29 Ga0068869_100008145 3300005334 Bacteria 6745
30 Ga0070674_100005111 3300005356 Bacteria 7542
31 Ga0070659_100010249 3300005366 Bacteria 6893
32 Ga0070708_100037524 3300005445 Bacteria 4228
33 Ga0070681_10003903 3300005458 Bacteria 14051
34 Ga0070679_100000497 3300005530 Bacteria 33512
35 Ga0068854_100037574 3300005578 Bacteria 3400
36 Ga0068852_100000876 3300005616 Bacteria 19922
37 Ga0068864_100009545 3300005618 Bacteria 8006
38 Ga0068860_100005328 3300005843 Bacteria 13059
39 Ga0105237_10001903 3300009545 Bacteria 26623
40 Ga0105237_10002685 3300009545 Bacteria 21805
41 Ga0105249_10004669 3300009553 Bacteria 11829
42 Ga0105239_10000256 3300010375 Bacteria 79404
43 Ga0105239_10004346 3300010375 Bacteria 16981
44 Ga0105239_10033942 3300010375 Bacteria 5602
45 Ga0105239_10092908 3300010375 Bacteria 3331
46 Ga0157371_10006817 3300013102 Bacteria 9335
47 Ga0157370_10003405 3300013104 Bacteria 18686
48 Ga0157370_10076025 3300013104 Bacteria 3164
49 Ga0157369_10002963 3300013105 Bacteria 20304
50 Ga0157374_10048015 3300013296 Bacteria 3960
51 Ga0157378_10010134 3300013297 Bacteria 8218
52 Ga0157372_10002316 3300013307 Bacteria 20643
53 Ga0163163_10080518 3300014325 Bacteria 3257
54 Ga0157380_10000916 3300014326 Bacteria 18570
55 Ga0157380_10024509 3300014326 Bacteria 4567
56 Ga0182008_10000048 3300014497 Bacteria 105176
57 Ga0157377_10008603 3300014745 Bacteria 4982
58 Ga0182006_1000076 3300015261 Bacteria 127435
59 Ga0182006_1000103 3300015261 Bacteria 93638
60 Ga0182007_10000091 3300015262 Bacteria 65452
61 Ga0182005_1000415 3300015265 Bacteria 23076
62 Ga0183373_1002 3300015682 Bacteria 990153
63 Ga0163161_10000207 3300017792 Bacteria 53913
64 Ga0163161_10000411 3300017792 Bacteria 35935
65 Ga0209437_100017 3300025233 Bacteria 694471
66 Ga0209646_1000002 3300025246 Bacteria 1425781
67 Ga0209646_1000045 3300025246 Bacteria 333765
68 Ga0209026_1000075 3300025250 Bacteria 202874
69 Ga0209026_1000086 3300025250 Bacteria 185551
70 Ga0209565_1000012 3300025263 Bacteria 606500
71 Ga0209673_1000515 3300025273 Bacteria 63365
72 Ga0209673_1002755 3300025273 Bacteria 11498
73 Ga0209564_1006111 3300025295 Bacteria 6609
74 Ga0209564_1007730 3300025295 Bacteria 5470
75 Ga0209758_1001047 3300025297 Bacteria 36246
76 Ga0209758_1002047 3300025297 Bacteria 21629
77 Ga0209758_1002365 3300025297 Bacteria 19421
78 Ga0209758_1003061 3300025297 Bacteria 15899
79 Ga0209050_1000010 3300025298 Bacteria 980454
80 Ga0209050_1000455 3300025298 Bacteria 73312
81 Ga0209050_1003568 3300025298 Bacteria 11323
82 Ga0209256_1000012 3300025299 Bacteria 790371
83 Ga0207426_1000157 3300025302 Bacteria 178442
84 Ga0207426_1000159 3300025302 Bacteria 175899
85 Ga0207426_1001097 3300025302 Bacteria 24936
86 Ga0207426_1003353 3300025302 Bacteria 8806
87 Ga0207426_1008031 3300025302 Bacteria 4329
88 Ga0209257_1000009 3300025304 Bacteria 1205047
89 Ga0209257_1000013 3300025304 Bacteria 1047305
90 Ga0209257_1001247 3300025304 Bacteria 31465
91 Ga0209257_1002315 3300025304 Bacteria 19253
92 Ga0207647_10000050 3300025904 Bacteria 88099
93 Ga0207707_10002111 3300025912 Bacteria 17985
94 Ga0207671_10003561 3300025914 Bacteria 15430
95 Ga0207652_10003457 3300025921 Bacteria 13025
96 Ga0207650_10010727 3300025925 Bacteria 6290
97 Ga0207650_10012061 3300025925 Bacteria 5958
98 Ga0207669_10011645 3300025937 Bacteria 4290
99 Ga0207712_10011269 3300025961 Bacteria 5691
100 Ga0207676_10028145 3300026095 Bacteria 4195
101 Ga0268264_10028870 3300028381 Bacteria 4541
102 Ga0307515_10005387 3300028794 Bacteria 25927
103 Ga0307513_10033854 3300031456 Bacteria 5739
104 Ga0307408_100014303 3300031548 Bacteria 5272
105 Ga0307508_10024362 3300031616 Bacteria 5492
106 Ga0307405_10000014 3300031731 Bacteria 226733
107 Ga0307405_10012026 3300031731 Bacteria 4563
108 Ga0307410_10006744 3300031852 Bacteria 6225
109 Ga0307410_10018301 3300031852 Bacteria 4231
110 Ga0307410_10030273 3300031852 Bacteria 3458
111 Ga0307406_10020022 3300031901 Bacteria 3933
112 Ga0307406_10029601 3300031901 Bacteria 3317
113 Ga0307407_10000002 3300031903 Bacteria 323084
114 Ga0307407_10006005 3300031903 Bacteria 5345
115 Ga0307409_100000578 3300031995 Bacteria 15964
116 Ga0307409_100053239 3300031995 Bacteria 3109
117 Ga0307416_100000005 3300032002 Bacteria 477728
118 Ga0307416_100009496 3300032002 Bacteria 6371
119 Ga0307414_10013927 3300032004 Bacteria 4802
120 Ga0307411_10003727 3300032005 Bacteria 7145
121 Ga0307415_100016558 3300032126 Bacteria 4398
122 Ga0307415_100033913 3300032126 Bacteria 3317
123 Ga0307415_100039505 3300032126 Bacteria 3119
124 Ga0307510_10003966 3300033180 Bacteria 17345
125 Ga0395905_0001073 3300037471 Bacteria 34468
126 Ga0439457_000654 3300042014 Bacteria 10240
127 Ga0439434_0003812 3300042435 Bacteria 4407
128 Ga0466972_0013684 3300044658 Bacteria 4070
129 Ga0466957_0002372 3300044842 Bacteria 10111
130 Ga0495583_0020944 3300046506 Bacteria 3371
131 Ga0495606_0015689 3300046507 Bacteria 5820
132 Ga0495610_0000204 3300046512 Bacteria 65887
133 Ga0495610_0000279 3300046512 Bacteria 53150
134 Ga0495637_0007027 3300046520 Bacteria 5605
135 Ga0495633_0000242 3300046558 Bacteria 66147
136 Ga0495668_0002409 3300046616 Bacteria 15471
137 Ga0495625_0008402 3300046660 Bacteria 8814
138 Ga0495672_0014166 3300047320 Bacteria 5471
139 Ga0495677_0001751 3300047445 Bacteria 8698
140 Ga0496121_0000007 3300048924 Bacteria 942516
141 Ga0496122_0004451 3300048925 Bacteria 17373
142 Ga0496123_0029576 3300048926 Bacteria 4028
143 Ga0501298_000279 3300049521 Bacteria 6724
144 Ga0501202_000572 3300049652 Bacteria 5351
145 Ga0501217_001230 3300049661 Bacteria 4731
146 Ga0501242_000138 3300049674 Bacteria 5302
147 Ga0501243_000240 3300049675 Bacteria 6885
148 Ga0501261_000326 3300049690 Bacteria 6412
149 Ga0501221_000907 3300049704 Unclassified 4855
150 Ga0501225_0004246 3300049705 Unclassified 4279
151 Ga0501241_004642 3300049758 Bacteria 2566
152 Ga0501273_001321 3300049770 Bacteria 2333
153 Ga0501284_00017 3300050005 Bacteria 96362
154 Ga0500643_000620 3300053087 Bacteria 24035
155 Ga0500644_0000008 3300053088 Bacteria 130338
156 Ga0500569_002306 3300053109 Bacteria 3740
157 Ga0500652_004220 3300053131 Bacteria 4428
158 Ga0500577_0000614 3300053142 Bacteria 9147
159 Ga0500622_0000129 3300053156 Bacteria 79535
160 Ga0500622_0003308 3300053156 Bacteria 10900
161 Ga0500624_000157 3300053157 Bacteria 27997
162 Ga0500636_0015343 3300053177 Bacteria 4514
163 Ga0500611_000099 3300053727 Bacteria 22898
164 2738729401 2738541278 Bacteria 9755573
165 2738852662 2738541302 Bacteria 5944758
166 2819574489 2818991442 Bacteria 8318214
167 2819676305 2818991460 Bacteria 7595395
168 2821137859 2821136567 Bacteria 8080116
169 2842727222 2842722452 Bacteria 6263924
170 2842910774 2842909656 Bacteria 6185908
171 2849286667 2849281842 Bacteria 6065644
172 2857628123 2857627736 Bacteria 5625397
173 2896110037 2896109856 Bacteria 7140722
174 2904467390 2904467357 Bacteria 8057758
175 2910250887 2910245624 Bacteria 6935613
176 2911139891 2911138879 Bacteria 5811561
177 2914762835 2914759650 Bacteria 4701441
178 2929242380 2929239360 Bacteria 7745570
179 2929923556 2929921140 Bacteria 8649150
180 2929923937 2929921140 Bacteria 8649150
181 2945998135 2945997725 Bacteria 6404843
182 2954020578 2954016120 Bacteria 6446024
183 8003157755 8003151029 Bacteria 8187759
184 Ga0157380_10000174
185 JGI24740J21852_10013248
186 JGI24739J22299_10011306
187 JGI25162J39368_1000011
188 JGI25154J39366_1000007
189 JGI25154J39366_1000008
190 JGI25153J46596_10001267
191 rootH2_10018452
192 rootL2_10014855
193 rootL2_10253783
194 rootH1_10015461
195 rootH1_10109117
196 JGI25160J50197_1000450
197 JGI25160J50197_1007604
198 Ga0055526_1008083
199 Ga0055524_1000030
200 Ga0055528_1000345
201 Ga0055528_1001109
202 Ga0055530_10000521
203 Ga0055530_10000920
204 Ga0055530_10009182
205 Ga0055531_10000220
206 Ga0055531_10001203
207 Ga0055531_10002923
208 Ga0065165_1000632
209 Ga0065165_1005993
210 Ga0065165_1007825
211 Ga0070670_100012411
212 Ga0068869_100008145
213 Ga0070674_100005111
214 Ga0070659_100010249
215 Ga0070708_100037524
216 Ga0070681_10003903
217 Ga0070679_100000497
218 Ga0068854_100037574
219 Ga0068852_100000876
220 Ga0068864_100009545
221 Ga0068860_100005328
222 Ga0105237_10001903
223 Ga0105237_10002685
224 Ga0105249_10004669
225 Ga0105239_10000256
226 Ga0105239_10004346
227 Ga0105239_10033942
228 Ga0105239_10092908
229 Ga0157371_10006817
230 Ga0157370_10003405
231 Ga0157370_10076025
232 Ga0157369_10002963
233 Ga0157374_10048015
234 Ga0157378_10010134
235 Ga0157372_10002316
236 Ga0163163_10080518
237 Ga0157380_10000916
238 Ga0157380_10024509
239 Ga0182008_10000048
240 Ga0157377_10008603
241 Ga0182006_1000076
242 Ga0182006_1000103
243 Ga0182007_10000091
244 Ga0182005_1000415
245 Ga0183373_1002
246 Ga0163161_10000207
247 Ga0163161_10000411
248 Ga0209437_100017
249 Ga0209646_1000002
250 Ga0209646_1000045
251 Ga0209026_1000075
252 Ga0209026_1000086
253 Ga0209565_1000012
254 Ga0209673_1000515
255 Ga0209673_1002755
256 Ga0209564_1006111
257 Ga0209564_1007730
258 Ga0209758_1001047
259 Ga0209758_1002047
260 Ga0209758_1002365
261 Ga0209758_1003061
262 Ga0209050_1000010
263 Ga0209050_1000455
264 Ga0209050_1003568
265 Ga0209256_1000012
266 Ga0207426_1000157
267 Ga0207426_1000159
268 Ga0207426_1001097
269 Ga0207426_1003353
270 Ga0207426_1008031
271 Ga0209257_1000009
272 Ga0209257_1000013
273 Ga0209257_1001247
274 Ga0209257_1002315
275 Ga0207647_10000050
276 Ga0207707_10002111
277 Ga0207671_10003561
278 Ga0207652_10003457
279 Ga0207650_10010727
280 Ga0207650_10012061
281 Ga0207669_10011645
282 Ga0207712_10011269
283 Ga0207676_10028145
284 Ga0268264_10028870
285 Ga0307515_10005387
286 Ga0307513_10033854
287 Ga0307408_100014303
288 Ga0307508_10024362
289 Ga0307405_10000014
290 Ga0307405_10012026
291 Ga0307410_10006744
292 Ga0307410_10018301
293 Ga0307410_10030273
294 Ga0307406_10020022
295 Ga0307406_10029601
296 Ga0307407_10000002
297 Ga0307407_10006005
298 Ga0307409_100000578
299 Ga0307409_100053239
300 Ga0307416_100000005
301 Ga0307416_100009496
302 Ga0307414_10013927
303 Ga0307411_10003727
304 Ga0307415_100016558
305 Ga0307415_100033913
306 Ga0307415_100039505
307 Ga0307510_10003966
308 Ga0395905_0001073
309 Ga0439457_000654
310 Ga0439434_0003812
311 Ga0466972_0013684
312 Ga0466957_0002372
313 Ga0495583_0020944
314 Ga0495606_0015689
315 Ga0495610_0000204
316 Ga0495610_0000279
317 Ga0495637_0007027
318 Ga0495633_0000242
319 Ga0495668_0002409
320 Ga0495625_0008402
321 Ga0495672_0014166
322 Ga0495677_0001751
323 Ga0496121_0000007
324 Ga0496122_0004451
325 Ga0496123_0029576
326 Ga0501298_000279
327 Ga0501202_000572
328 Ga0501217_001230
329 Ga0501242_000138
330 Ga0501243_000240
331 Ga0501261_000326
332 Ga0501221_000907
333 Ga0501225_0004246
334 Ga0501241_004642
335 Ga0501273_001321
336 Ga0501284_00017
337 Ga0500643_000620
338 Ga0500644_0000008
339 Ga0500569_002306
340 Ga0500652_004220
341 Ga0500577_0000614
342 Ga0500622_0000129
343 Ga0500622_0003308
344 Ga0500624_000157
345 Ga0500636_0015343
346 Ga0500611_000099
347 2738729401
348 2738852662
349 2819574489
350 2819676305
351 2821137859
352 2842727222
353 2842910774
354 2849286667
355 2857628123
356 2896110037
357 2904467390
358 2910250887
359 2911139891
360 2914762835
361 2929242380
362 2929923556
363 2929923937
364 2945998135
365 2954020578
366 8003157755

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00691

OmpA

OmpA family

1022

1117

0.96

PF13620

CarboxypepD_reg

Carboxypeptidase regulatory-like domain

31

106

0.96

PF07715

Plug

TonB-dependent Receptor Plug Domain

126

248

0.95

PF13715

CarbopepD_reg_2

CarboxypepD_reg-like domain

32

117

0.88

PF00593

TonB_dep_Rec_b-barrel

TonB dependent receptor-like, beta-barrel

380

910

0.65

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fp2-assembly2.cif.gz_B crystal structure of the siderophore receptor pira from pseudomonas aeruginosa 0.8678 51 828
5fp2-assembly1.cif.gz_A crystal structure of the siderophore receptor pira from pseudomonas aeruginosa 0.8624 51 828
5fp2-assembly2.cif.gz_B crystal structure of the siderophore receptor pira from pseudomonas aeruginosa 0.8571 51 828
5fp2-assembly1.cif.gz_A crystal structure of the siderophore receptor pira from pseudomonas aeruginosa 0.851 51 828
1nqe-assembly1.cif.gz_A outer membrane cobalamin transporter (btub) from e. coli 0.8432 31 828
ID Description Score Start End Superfamily
3rgnA02 Mainly Beta;Beta Barrel;Maltoporin; Chain A;TonB-dependent receptor, beta-barrel domain 0.8175 180 828 2.40.170.20
3rgnA02 Mainly Beta;Beta Barrel;Maltoporin; Chain A;TonB-dependent receptor, beta-barrel domain 0.8031 180 828 2.40.170.20
3fhhA01 Mainly Beta;Beta Complex;Ferric Hydroxamate Uptake Protein; Chain A, domain 1;TonB-dependent receptor, plug domain 0.7934 39 170 2.170.130.10
3fhhA02 Mainly Beta;Beta Barrel;Maltoporin; Chain A;TonB-dependent receptor, beta-barrel domain 0.7744 172 828 2.40.170.20
2hdiA02 Mainly Beta;Beta Barrel;Maltoporin; Chain A;TonB-dependent receptor, beta-barrel domain 0.7693 177 828 2.40.170.20
ID Description Score Start End GO Terms
AF-A0A160TJT2-F1-model_v4 Ferric enterobactin receptor 0.9446 274 828 GO:0009279
AF-A0A227J1R4-F1-model_v4 TonB-dependent receptor-like beta-barrel domain-containing protein 0.9368 479 549 GO:0009279
GO:0015344
AF-R9GM88-F1-model_v4 TonB-dependent receptor 0.918 28 828 GO:0009279
AF-A0A519JYW5-F1-model_v4 TonB-dependent receptor 0.9146 500 828 GO:0009279
AF-A0A160TJT2-F1-model_v4 Ferric enterobactin receptor 0.9108 274 828 GO:0009279

Map