F281297

General Info

Members Datasets Scaffolds Average Seq Length
183 128 366 383

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0267205|Ga0451576_0267205_178_1521
Length 440
Sequence MSGPGARSAIPSVAKTIRAKKNPFKRMSETITPGFVLQDALSTRKCLPEISVLHDSRIQQSMNKARLGIIGMGNIGKHHADSLLAGKVPRCELTAVCSTSPHKLESYRAKGLKIFDRAEKLIESREVDAVILATPHYQHTSLGIAVLEAGLHLMVEKPISAHKADAERLIAVARKHPDQVFAGMFQLRVEPRYLKIRKLIQSGELGDIVRLSWIITDWYRTEAYYSSGGWRATWRGEGGGVLLNQCLHNLDVLAWLFGLPARVRGYCQLGRYHNIEVEDNVTAYLEYPNGATGVFITSTGEAPGTNRFEIAGTRGRAVLENNRLVFTRNESDMIEFSKTAQVGFSKPEVWNVEIPFDNAPAPHASLLQNFIDAILDRTRLIAPGEEGLHSVELANVMLYSSLMGQAIDLPMDGAAFEKKLQQLIAESKIKADDFTKSFNR

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
70 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
71 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
72 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
73 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
74 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
75 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
76 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
79 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
80 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
81 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
82 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
83 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
84 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
85 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
86 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
87 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
88 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
89 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
90 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
91 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
93 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
94 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
95 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
98 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
99 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
100 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
101 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
102 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
103 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
104 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
105 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
106 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
109 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
110 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
111 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
116 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
117 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
118 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
119 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
120 2738541295 Bacillus sp. OK085 Isolate Unclassified
121 2738543010 Bacillus sp. YR335 Isolate Unclassified
122 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified
123 2857472729 Cohnella sp. R-74144 Isolate Unclassified
124 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
125 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
126 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
127 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
128 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.44
Metatranscriptomes 0.55
Isolates 6.01

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.09
Nodule 0
Rhizoplane 0
Rhizosphere 93.44
Stem 0
Stem Tuber 0
Unclassified 15.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0267205 3300045051 Unclassified 1788
2 rootH2_10013199 3300003320 Bacteria 12520
3 rootH2_10061682 3300003320 Bacteria 12487
4 rootH1_10094659 3300003323 Bacteria 3767
5 rootH1_10130245 3300003323 Bacteria 9412
6 Ga0006562J51391_1017897 3300003578 Bacteria 2904
7 Ga0068868_100125542 3300005338 Bacteria 2096
8 Ga0070689_100009574 3300005340 Bacteria 6873
9 Ga0070689_100114407 3300005340 Bacteria 2149
10 Ga0070675_100181469 3300005354 Bacteria 1820
11 Ga0070671_100018315 3300005355 Bacteria 5687
12 Ga0070688_100037434 3300005365 Bacteria 2956
13 Ga0070659_100172567 3300005366 Bacteria 1772
14 Ga0070701_10034993 3300005438 Unclassified 2520
15 Ga0070700_100024171 3300005441 Bacteria 3564
16 Ga0070663_100008234 3300005455 Bacteria 6404
17 Ga0070685_10074937 3300005466 Unclassified 2015
18 Ga0070685_10145605 3300005466 Unclassified 1496
19 Ga0070686_100002045 3300005544 Bacteria 11168
20 Ga0070686_100057634 3300005544 Unclassified 2496
21 Ga0070665_100000174 3300005548 Bacteria 114347
22 Ga0070665_100294173 3300005548 Unclassified 1626
23 Ga0070704_100072329 3300005549 Bacteria 2508
24 Ga0068855_100007170 3300005563 Bacteria 13525
25 Ga0068855_100116541 3300005563 Bacteria 3061
26 Ga0068856_100008494 3300005614 Bacteria 9987
27 Ga0068859_100427924 3300005617 Bacteria 1420
28 Ga0068861_100001231 3300005719 Bacteria 15945
29 Ga0068863_100075417 3300005841 Unclassified 3191
30 Ga0068863_100123499 3300005841 Bacteria 2470
31 Ga0068858_100008145 3300005842 Bacteria 10075
32 Ga0068858_100095693 3300005842 Bacteria 2767
33 Ga0068860_100000390 3300005843 Bacteria 57357
34 Ga0075366_10028244 3300006195 Bacteria 3293
35 Ga0068871_100247431 3300006358 Bacteria 1552
36 Ga0075428_100008794 3300006844 Bacteria 11207
37 Ga0075431_100102682 3300006847 Bacteria 2951
38 Ga0097620_100428019 3300006931 Bacteria 1420
39 Ga0105240_10001017 3300009093 Bacteria 50007
40 Ga0111539_10075011 3300009094 Unclassified 3985
41 Ga0111539_10078439 3300009094 Bacteria 3885
42 Ga0111539_10389919 3300009094 Unclassified 1622
43 Ga0105245_10000633 3300009098 Bacteria 31998
44 Ga0105245_10166144 3300009098 Bacteria 2098
45 Ga0114129_10660423 3300009147 Bacteria 1348
46 Ga0105241_10003892 3300009174 Bacteria 11062
47 Ga0105242_10028511 3300009176 Unclassified 4447
48 Ga0105242_10066241 3300009176 Bacteria 2982
49 Ga0105248_10523779 3300009177 Bacteria 1337
50 Ga0105237_10000275 3300009545 Bacteria 72320
51 Ga0105237_10183383 3300009545 Bacteria 2093
52 Ga0105249_10107734 3300009553 Unclassified 2630
53 Ga0157374_10009157 3300013296 Bacteria 8486
54 Ga0157374_10119299 3300013296 Bacteria 2544
55 Ga0157374_10367572 3300013296 Unclassified 1431
56 Ga0157378_10218945 3300013297 Bacteria 1809
57 Ga0163162_10598854 3300013306 Unclassified 1229
58 Ga0157375_10000023 3300013308 Bacteria 235137
59 Ga0163163_10000027 3300014325 Bacteria 176970
60 Ga0163163_10121631 3300014325 Bacteria 2644
61 Ga0163163_10251594 3300014325 Unclassified 1817
62 Ga0157380_10332180 3300014326 Bacteria 1414
63 Ga0157376_10133127 3300014969 Unclassified 2221
64 Ga0207695_10004680 3300025913 Bacteria 18537
65 Ga0207671_10000134 3300025914 Bacteria 113822
66 Ga0207671_10018635 3300025914 Bacteria 5319
67 Ga0207650_10071436 3300025925 Bacteria 2611
68 Ga0207659_10036124 3300025926 Bacteria 3420
69 Ga0207687_10002376 3300025927 Bacteria 12778
70 Ga0207644_10046031 3300025931 Bacteria 3106
71 Ga0207690_10191146 3300025932 Bacteria 1548
72 Ga0207686_10159256 3300025934 Unclassified 1580
73 Ga0207670_10003355 3300025936 Bacteria 8498
74 Ga0207670_10032539 3300025936 Bacteria 3354
75 Ga0207667_10005403 3300025949 Bacteria 15581
76 Ga0207667_10122096 3300025949 Bacteria 2684
77 Ga0207712_10145646 3300025961 Unclassified 1823
78 Ga0207658_10180908 3300025986 Bacteria 1745
79 Ga0207677_10104228 3300026023 Bacteria 2096
80 Ga0207703_10011712 3300026035 Bacteria 6825
81 Ga0207678_10018640 3300026067 Bacteria 6092
82 Ga0207702_10033583 3300026078 Bacteria 4286
83 Ga0207641_10026715 3300026088 Bacteria 4766
84 Ga0207641_10099948 3300026088 Bacteria 2554
85 Ga0207648_10299373 3300026089 Unclassified 1442
86 Ga0207676_10100282 3300026095 Bacteria 2399
87 Ga0207674_10025953 3300026116 Bacteria 6235
88 Ga0207675_100002579 3300026118 Bacteria 17953
89 Ga0268266_10006127 3300028379 Bacteria 11069
90 Ga0268264_10000988 3300028381 Bacteria 29062
91 Ga0265337_1001320 3300028556 Bacteria 12357
92 Ga0265326_10006188 3300028558 Unclassified 3734
93 Ga0265326_10019968 3300028558 Bacteria 1923
94 Ga0265338_10000062 3300028800 Bacteria 196060
95 Ga0265338_10000283 3300028800 Bacteria 91383
96 Ga0265338_10057968 3300028800 Bacteria 3422
97 Ga0265338_10066262 3300028800 Bacteria 3127
98 Ga0265338_10104332 3300028800 Bacteria 2300
99 Ga0265324_10000658 3300029957 Bacteria 23278
100 Ga0265332_10006052 3300031238 Bacteria 5527
101 Ga0265320_10015880 3300031240 Bacteria 4240
102 Ga0265329_10008575 3300031242 Bacteria 3868
103 Ga0265339_10004373 3300031249 Bacteria 9641
104 Ga0265327_10002281 3300031251 Bacteria 20612
105 Ga0265327_10007483 3300031251 Bacteria 8419
106 Ga0265327_10061520 3300031251 Bacteria 1915
107 Ga0307513_10148717 3300031456 Bacteria 2256
108 Ga0316579_10036650 3300031691 Bacteria 2263
109 Ga0265314_10000554 3300031711 Bacteria 47642
110 Ga0307409_100149866 3300031995 Bacteria 2023
111 Ga0307411_10038911 3300032005 Unclassified 3005
112 Ga0307411_10081383 3300032005 Bacteria 2230
113 Ga0316580_10020826 3300032139 Bacteria 2021
114 Ga0373926_0027969 3300035083 Bacteria 1978
115 Ga0373931_0027462 3300035691 Bacteria 2906
116 Ga0373927_0005096 3300035695 Bacteria 9096
117 Ga0373927_0078031 3300035695 Unclassified 2145
118 Ga0373933_0093296 3300035724 Bacteria 1860
119 Ga0373947_0013135 3300035725 Bacteria 4748
120 Ga0316582_0002907 3300036647 Bacteria 8233
121 Ga0316582_0038970 3300036647 Bacteria 2957
122 Ga0316582_0101969 3300036647 Bacteria 1902
123 Ga0316584_0079110 3300036712 Bacteria 2463
124 Ga0373925_0000449 3300037068 Bacteria 41682
125 Ga0395905_0014807 3300037471 Bacteria 7436
126 Ga0439448_0003126 3300042005 Bacteria 4564
127 Ga0439450_022918 3300042008 Unclassified 1351
128 Ga0451577_0000525 3300042876 Bacteria 63829
129 Ga0451577_0015367 3300042876 Bacteria 7124
130 Ga0451577_0079540 3300042876 Bacteria 2922
131 Ga0453684_0004207 3300044712 Bacteria 30925
132 Ga0453684_0008149 3300044712 Bacteria 18911
133 Ga0453684_0023938 3300044712 Bacteria 8955
134 Ga0453684_0393692 3300044712 Unclassified 1553
135 Ga0453684_0397485 3300044712 Bacteria 1544
136 Ga0451576_0000117 3300045051 Bacteria 206301
137 Ga0451576_0083885 3300045051 Bacteria 3315
138 Ga0451576_0104078 3300045051 Bacteria 2953
139 Ga0451576_0116103 3300045051 Bacteria 2787
140 Ga0495592_0140202 3300046454 Bacteria 1683
141 Ga0495590_0025398 3300046457 Bacteria 2083
142 Ga0495582_0016013 3300046473 Bacteria 4111
143 Ga0495582_0116476 3300046473 Unclassified 1503
144 Ga0495630_0000453 3300046517 Bacteria 31046
145 Ga0495630_0016380 3300046517 Bacteria 5415
146 Ga0495630_0166027 3300046517 Bacteria 1681
147 Ga0495643_0000424 3300046522 Bacteria 55018
148 Ga0495652_0240948 3300046529 Unclassified 1346
149 Ga0495586_0000305 3300046535 Bacteria 31082
150 Ga0495586_0000699 3300046535 Bacteria 19031
151 Ga0495586_0003663 3300046535 Bacteria 8237
152 Ga0495645_0056111 3300046543 Bacteria 2860
153 Ga0495634_0007496 3300046642 Bacteria 8177
154 Ga0495657_0016416 3300046675 Bacteria 5397
155 Ga0495658_0001657 3300046683 Bacteria 11584
156 Ga0495658_0112097 3300046683 Unclassified 1641
157 Ga0495613_0002510 3300046689 Bacteria 13831
158 Ga0495674_0021736 3300047319 Bacteria 5929
159 Ga0495674_0205901 3300047319 Bacteria 1631
160 Ga0495676_0006415 3300047321 Bacteria 10838
161 Ga0495676_0078528 3300047321 Bacteria 2513
162 Ga0501037_0008288 3300049573 Bacteria 7620
163 Ga0501046_0000550 3300049580 Bacteria 37312
164 Ga0501047_0068447 3300049581 Bacteria 3419
165 Ga0501047_0216943 3300049581 Bacteria 1770
166 Ga0501048_0086009 3300049582 Bacteria 2218
167 Ga0501080_0243102 3300049742 Bacteria 1642
168 Ga0501080_0262829 3300049742 Unclassified 1572
169 nmdc:mga0k408_13718_c1 3300050493 Bacteria 4449
170 nmdc:mga06r32_366287_c1 3300050510 Unclassified 1425
171 nmdc:mga06r32_45589_c1 3300050510 Bacteria 4180
172 nmdc:mga08y16_25788_c1 3300050511 Bacteria 6202
173 2512732912 2512564039 Bacteria 8739048
174 2738813526 2738541295 Bacteria 5730091
175 2739232328 2738543010 Bacteria 5583595
176 2787509596 2786546548 Bacteria 4745694
177 2857476723 2857472729 Bacteria 6568124
178 3001269738 3001267043 Bacteria 4823521
179 3001270789 3001267043 Bacteria 4823521
180 3001276426 3001272096 Bacteria 4729684
181 3006973430 3006969106 Bacteria 4739423
182 3006987593 3006984091 Bacteria 4207523
183 3006991823 3006988479 Bacteria 4767936
184 Ga0451576_0267205
185 rootH2_10013199
186 rootH2_10061682
187 rootH1_10094659
188 rootH1_10130245
189 Ga0006562J51391_1017897
190 Ga0068868_100125542
191 Ga0070689_100009574
192 Ga0070689_100114407
193 Ga0070675_100181469
194 Ga0070671_100018315
195 Ga0070688_100037434
196 Ga0070659_100172567
197 Ga0070701_10034993
198 Ga0070700_100024171
199 Ga0070663_100008234
200 Ga0070685_10074937
201 Ga0070685_10145605
202 Ga0070686_100002045
203 Ga0070686_100057634
204 Ga0070665_100000174
205 Ga0070665_100294173
206 Ga0070704_100072329
207 Ga0068855_100007170
208 Ga0068855_100116541
209 Ga0068856_100008494
210 Ga0068859_100427924
211 Ga0068861_100001231
212 Ga0068863_100075417
213 Ga0068863_100123499
214 Ga0068858_100008145
215 Ga0068858_100095693
216 Ga0068860_100000390
217 Ga0075366_10028244
218 Ga0068871_100247431
219 Ga0075428_100008794
220 Ga0075431_100102682
221 Ga0097620_100428019
222 Ga0105240_10001017
223 Ga0111539_10075011
224 Ga0111539_10078439
225 Ga0111539_10389919
226 Ga0105245_10000633
227 Ga0105245_10166144
228 Ga0114129_10660423
229 Ga0105241_10003892
230 Ga0105242_10028511
231 Ga0105242_10066241
232 Ga0105248_10523779
233 Ga0105237_10000275
234 Ga0105237_10183383
235 Ga0105249_10107734
236 Ga0157374_10009157
237 Ga0157374_10119299
238 Ga0157374_10367572
239 Ga0157378_10218945
240 Ga0163162_10598854
241 Ga0157375_10000023
242 Ga0163163_10000027
243 Ga0163163_10121631
244 Ga0163163_10251594
245 Ga0157380_10332180
246 Ga0157376_10133127
247 Ga0207695_10004680
248 Ga0207671_10000134
249 Ga0207671_10018635
250 Ga0207650_10071436
251 Ga0207659_10036124
252 Ga0207687_10002376
253 Ga0207644_10046031
254 Ga0207690_10191146
255 Ga0207686_10159256
256 Ga0207670_10003355
257 Ga0207670_10032539
258 Ga0207667_10005403
259 Ga0207667_10122096
260 Ga0207712_10145646
261 Ga0207658_10180908
262 Ga0207677_10104228
263 Ga0207703_10011712
264 Ga0207678_10018640
265 Ga0207702_10033583
266 Ga0207641_10026715
267 Ga0207641_10099948
268 Ga0207648_10299373
269 Ga0207676_10100282
270 Ga0207674_10025953
271 Ga0207675_100002579
272 Ga0268266_10006127
273 Ga0268264_10000988
274 Ga0265337_1001320
275 Ga0265326_10006188
276 Ga0265326_10019968
277 Ga0265338_10000062
278 Ga0265338_10000283
279 Ga0265338_10057968
280 Ga0265338_10066262
281 Ga0265338_10104332
282 Ga0265324_10000658
283 Ga0265332_10006052
284 Ga0265320_10015880
285 Ga0265329_10008575
286 Ga0265339_10004373
287 Ga0265327_10002281
288 Ga0265327_10007483
289 Ga0265327_10061520
290 Ga0307513_10148717
291 Ga0316579_10036650
292 Ga0265314_10000554
293 Ga0307409_100149866
294 Ga0307411_10038911
295 Ga0307411_10081383
296 Ga0316580_10020826
297 Ga0373926_0027969
298 Ga0373931_0027462
299 Ga0373927_0005096
300 Ga0373927_0078031
301 Ga0373933_0093296
302 Ga0373947_0013135
303 Ga0316582_0002907
304 Ga0316582_0038970
305 Ga0316582_0101969
306 Ga0316584_0079110
307 Ga0373925_0000449
308 Ga0395905_0014807
309 Ga0439448_0003126
310 Ga0439450_022918
311 Ga0451577_0000525
312 Ga0451577_0015367
313 Ga0451577_0079540
314 Ga0453684_0004207
315 Ga0453684_0008149
316 Ga0453684_0023938
317 Ga0453684_0393692
318 Ga0453684_0397485
319 Ga0451576_0000117
320 Ga0451576_0083885
321 Ga0451576_0104078
322 Ga0451576_0116103
323 Ga0495592_0140202
324 Ga0495590_0025398
325 Ga0495582_0016013
326 Ga0495582_0116476
327 Ga0495630_0000453
328 Ga0495630_0016380
329 Ga0495630_0166027
330 Ga0495643_0000424
331 Ga0495652_0240948
332 Ga0495586_0000305
333 Ga0495586_0000699
334 Ga0495586_0003663
335 Ga0495645_0056111
336 Ga0495634_0007496
337 Ga0495657_0016416
338 Ga0495658_0001657
339 Ga0495658_0112097
340 Ga0495613_0002510
341 Ga0495674_0021736
342 Ga0495674_0205901
343 Ga0495676_0006415
344 Ga0495676_0078528
345 Ga0501037_0008288
346 Ga0501046_0000550
347 Ga0501047_0068447
348 Ga0501047_0216943
349 Ga0501048_0086009
350 Ga0501080_0243102
351 Ga0501080_0262829
352 nmdc:mga0k408_13718_c1
353 nmdc:mga06r32_366287_c1
354 nmdc:mga06r32_45589_c1
355 nmdc:mga08y16_25788_c1
356 2512732912
357 2738813526
358 2739232328
359 2787509596
360 2857476723
361 3001269738
362 3001270789
363 3001276426
364 3006973430
365 3006987593
366 3006991823

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

65

184

0.94

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

193

318

0.94

PF03807

F420_oxidored

NADP oxidoreductase coenzyme F420-dependent

66

150

0.91

PF03447

NAD_binding_3

Homoserine dehydrogenase, NAD binding domain

71

182

0.9

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

197

409

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3q2k-assembly2.cif.gz_P crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9045 3 349
3q2k-assembly2.cif.gz_L crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.9014 3 349
3q2k-assembly2.cif.gz_P crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.8991 3 349
3q2k-assembly1.cif.gz_E crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.8988 3 349
3q2k-assembly2.cif.gz_L crystal structure of the wlba dehydrogenase from bordetella pertussis in complex with nadh and udp-glcnaca 0.896 3 349
ID Description Score Start End Superfamily
4n54A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9242 3 120 3.40.50.720
af_Q2G1E6_2_122_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.916 3 109 3.40.50.720
3moiA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9072 3 120 3.40.50.720
af_D4A903_1_122_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9063 3 109 3.40.50.720
6jnkA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8998 3 109 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2A2R0K8-F1-model_v4 Oxidoreductase 0.991 1 364 GO:0000166
GO:0016491
AF-A0A1V5VCS1-F1-model_v4 Inositol 2-dehydrogenase (EC 1.1.1.18) 0.9785 1 365 GO:0000166
GO:0050112
AF-A0A2A2R0K8-F1-model_v4 Oxidoreductase 0.9723 1 364 GO:0000166
GO:0016491
AF-A0A1V5VCS1-F1-model_v4 Inositol 2-dehydrogenase (EC 1.1.1.18) 0.9706 1 365 GO:0000166
GO:0050112
AF-A0A382N103-F1-model_v4 Uncharacterized protein 0.97 1 181 GO:0000166
GO:0016491

Map