F282633

General Info

Members Datasets Scaffolds Average Seq Length
184 145 368 294

Family's Representative Sequence

Representative Sequence 3300025256|Ga0209759_1023026|Ga0209759_10230261
Length 328
Sequence LLRRFKPQHSVLTHQVTLLNRLLTLSYSKLATDTGGKIVATLKYVKHERILLKNHIDLDERWLQDRIGEDPSILGLGDLVLKDRERIQPRAGRLDLLLQDAETNKRFEVEVQLGKTDEAHIIRTIEYWDIERKRYPQYDHTAVIVAEDITSRFLNVISLFNGSIPLVAIQLNAIKLGDSISLVCSKVLDELQLGLVDEDEEVQAVTDRAYWEARASKSTLAMADEMLRELRTLDADLELKYNKFYIGLAKGGQPNNFVIFRPKKDWLRLEVRLDRSDETQSDLNSSGLDVMDYDSRWGCYRIRLAQGDVAKHRDFLRSLMGKAFAEAS

Samples

Sample ID Description Type Environment
1 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
2 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
3 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
4 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
5 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
6 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
7 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
8 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
9 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
12 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
13 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
18 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
19 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
37 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
40 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
41 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
42 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
43 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
44 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
45 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
46 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
48 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
49 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
53 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
55 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
58 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
59 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
60 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
61 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
67 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
68 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
70 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
71 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
72 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
98 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
99 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
100 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
101 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
102 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
103 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
104 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
105 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
106 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
107 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
108 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
109 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
110 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
111 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
112 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
113 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
114 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
115 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
116 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
117 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
118 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
121 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
122 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
126 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
127 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
128 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
133 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
134 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
135 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
136 2508501123 Mesorhizobium sp. WSM3626 Isolate Nodule
137 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
138 2874590934 Bradyrhizobium canariense UBMA181 Isolate Nodule
139 2876771140 Bradyrhizobium canariense UBMA192 Isolate Nodule
140 2876818435 Bradyrhizobium canariense UBMA195 Isolate Nodule
141 2879074833 Bradyrhizobium canariense UBMA171 Isolate Nodule
142 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
143 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
144 2964691889 Sinorhizobium meliloti USDA1379 Isolate Nodule
145 8019629233 Bradyrhizobium sp. GM6.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.57
Metatranscriptomes 0
Isolates 5.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.24
Nodule 5.43
Rhizoplane 1.09
Rhizosphere 79.89
Stem 0
Stem Tuber 0
Unclassified 8.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209759_1023026 3300025256 Bacteria 1381
2 SwRhRL3b_contig_2816702 2162886006 Bacteria 2249
3 SwRhRL2b_contig_873095 2162886007 Bacteria 2670
4 JGI24741J21665_1008066 3300001915 Bacteria 2005
5 JGI24740J21852_10019944 3300001979 Bacteria 2351
6 JGI24737J22298_10000693 3300001990 Bacteria 11841
7 JGI25156J39149_1011191 3300002705 Bacteria 2048
8 JGI25157J39369_1008892 3300002741 Bacteria 1374
9 JGI25404J52841_10021706 3300003659 Bacteria 1390
10 Ga0065165_1017881 3300005262 Bacteria 2592
11 Ga0065704_10071588 3300005289 Bacteria 10604
12 Ga0065707_10002017 3300005295 Bacteria 8351
13 Ga0070658_10002990 3300005327 Bacteria 13996
14 Ga0070660_100002526 3300005339 Bacteria 12533
15 Ga0070660_100035536 3300005339 Bacteria 3772
16 Ga0070689_100066349 3300005340 Bacteria 2811
17 Ga0070659_100008434 3300005366 Bacteria 7528
18 Ga0070713_100061172 3300005436 Unclassified 3150
19 Ga0070701_10101401 3300005438 Bacteria 1595
20 Ga0070700_100064743 3300005441 Bacteria 2316
21 Ga0070663_100086300 3300005455 Bacteria 2317
22 Ga0070707_100001315 3300005468 Bacteria 24451
23 Ga0070707_100004786 3300005468 Bacteria 12669
24 Ga0070698_100026834 3300005471 Bacteria 5991
25 Ga0070698_100075728 3300005471 Bacteria 3369
26 Ga0070699_100022013 3300005518 Bacteria 5491
27 Ga0070699_100309327 3300005518 Bacteria 1418
28 Ga0068853_100243616 3300005539 Bacteria 1648
29 Ga0068853_100509145 3300005539 Bacteria 1137
30 Ga0070693_100089094 3300005547 Unclassified 1857
31 Ga0070665_100000440 3300005548 Bacteria 60649
32 Ga0070704_100062308 3300005549 Bacteria 2673
33 Ga0068855_100339604 3300005563 Bacteria 1656
34 Ga0070664_100188526 3300005564 Bacteria 1837
35 Ga0068857_100085484 3300005577 Bacteria 2819
36 Ga0068854_100035398 3300005578 Bacteria 3494
37 Ga0068856_100134361 3300005614 Bacteria 2479
38 Ga0068852_100281524 3300005616 Bacteria 1603
39 Ga0068859_100011084 3300005617 Bacteria 9071
40 Ga0068859_100189006 3300005617 Bacteria 2144
41 Ga0068859_100225923 3300005617 Bacteria 1960
42 Ga0068864_100203905 3300005618 Bacteria 1818
43 Ga0068851_10040773 3300005834 Bacteria 2334
44 Ga0068870_10036292 3300005840 Unclassified 2535
45 Ga0068862_100139422 3300005844 Bacteria 2151
46 Ga0068862_100208425 3300005844 Bacteria 1765
47 Ga0081540_1061743 3300005983 Bacteria 1785
48 Ga0070717_10052049 3300006028 Bacteria 3372
49 Ga0070717_10322209 3300006028 Unclassified 1377
50 Ga0075368_10046839 3300006042 Bacteria 1711
51 Ga0075363_100000557 3300006048 Bacteria 12157
52 Ga0070712_100317519 3300006175 Bacteria 1266
53 Ga0075367_10022336 3300006178 Bacteria 3547
54 Ga0075366_10004400 3300006195 Bacteria 7561
55 Ga0097621_100182200 3300006237 Bacteria 1815
56 Ga0075370_10073661 3300006353 Bacteria 1956
57 Ga0075428_100424657 3300006844 Bacteria 1424
58 Ga0075428_100760720 3300006844 Unclassified 1031
59 Ga0097620_100011083 3300006931 Bacteria 9071
60 Ga0097620_100189007 3300006931 Bacteria 2144
61 Ga0097620_100225930 3300006931 Bacteria 1960
62 Ga0105240_10374406 3300009093 Bacteria 1609
63 Ga0111539_10049098 3300009094 Bacteria 5035
64 Ga0111539_10057697 3300009094 Bacteria 4609
65 Ga0111539_10121263 3300009094 Unclassified 3064
66 Ga0105247_10066402 3300009101 Bacteria 2246
67 Ga0105247_10198983 3300009101 Bacteria 1345
68 Ga0114129_10036242 3300009147 Bacteria 6966
69 Ga0114129_10365981 3300009147 Bacteria 1907
70 Ga0105241_10085037 3300009174 Bacteria 2485
71 Ga0105241_10180025 3300009174 Bacteria 1753
72 Ga0105248_10200669 3300009177 Bacteria 2247
73 Ga0105248_10314755 3300009177 Bacteria 1763
74 Ga0105237_10010672 3300009545 Bacteria 9753
75 Ga0105237_10030347 3300009545 Bacteria 5491
76 Ga0105237_10440194 3300009545 Bacteria 1309
77 Ga0105238_10300239 3300009551 Bacteria 1589
78 Ga0099796_10013234 3300010159 Bacteria 2351
79 Ga0105239_10217380 3300010375 Bacteria 2143
80 Ga0105239_10352860 3300010375 Bacteria 1661
81 Ga0157373_10101984 3300013100 Bacteria 2019
82 Ga0157373_10180386 3300013100 Bacteria 1487
83 Ga0157371_10000197 3300013102 Bacteria 88423
84 Ga0157370_10244230 3300013104 Bacteria 1661
85 Ga0157369_10259401 3300013105 Bacteria 1813
86 Ga0163162_10009845 3300013306 Bacteria 9298
87 Ga0163162_10383434 3300013306 Bacteria 1539
88 Ga0157375_10344691 3300013308 Bacteria 1655
89 Ga0209646_1001869 3300025246 Bacteria 5178
90 Ga0209026_1000079 3300025250 Bacteria 198355
91 Ga0209130_1003867 3300025284 Bacteria 6035
92 Ga0209564_1039680 3300025295 Bacteria 1290
93 Ga0209758_1023390 3300025297 Bacteria 2796
94 Ga0207426_1000690 3300025302 Bacteria 40578
95 Ga0207656_10008213 3300025321 Bacteria 3831
96 Ga0207710_10001450 3300025900 Bacteria 11794
97 Ga0207710_10115344 3300025900 Bacteria 1278
98 Ga0207705_10000453 3300025909 Bacteria 35260
99 Ga0207684_10009988 3300025910 Bacteria 8368
100 Ga0207654_10000926 3300025911 Bacteria 16210
101 Ga0207671_10018463 3300025914 Bacteria 5351
102 Ga0207671_10022302 3300025914 Bacteria 4788
103 Ga0207671_10180475 3300025914 Bacteria 1643
104 Ga0207693_10253071 3300025915 Bacteria 1382
105 Ga0207693_10438414 3300025915 Bacteria 1021
106 Ga0207663_10276600 3300025916 Bacteria 1246
107 Ga0207657_10006136 3300025919 Bacteria 12491
108 Ga0207657_10009851 3300025919 Bacteria 9569
109 Ga0207646_10000653 3300025922 Bacteria 44777
110 Ga0207646_10004922 3300025922 Bacteria 14286
111 Ga0207694_10142092 3300025924 Bacteria 1931
112 Ga0207690_10002426 3300025932 Bacteria 11279
113 Ga0207670_10304498 3300025936 Bacteria 1249
114 Ga0207711_10245989 3300025941 Bacteria 1641
115 Ga0207679_10314949 3300025945 Bacteria 1353
116 Ga0207667_10047887 3300025949 Bacteria 4522
117 Ga0207668_10099827 3300025972 Bacteria 2154
118 Ga0207640_10000856 3300025981 Bacteria 17266
119 Ga0207639_10216499 3300026041 Bacteria 1652
120 Ga0207678_10099525 3300026067 Bacteria 2484
121 Ga0207702_10137517 3300026078 Bacteria 2206
122 Ga0207674_10424594 3300026116 Bacteria 1285
123 Ga0207698_10015611 3300026142 Bacteria 5091
124 Ga0268266_10000511 3300028379 Bacteria 54689
125 Ga0268265_10181992 3300028380 Bacteria 1806
126 Ga0268265_10325398 3300028380 Bacteria 1394
127 Ga0265323_10047912 3300028653 Unclassified 1527
128 Ga0265330_10006378 3300031235 Bacteria 5827
129 Ga0265332_10000230 3300031238 Bacteria 44762
130 Ga0265320_10001183 3300031240 Bacteria 19207
131 Ga0265325_10000310 3300031241 Bacteria 34255
132 Ga0265339_10004158 3300031249 Bacteria 9945
133 Ga0265316_10001151 3300031344 Bacteria 28669
134 Ga0265316_10008114 3300031344 Bacteria 9783
135 Ga0265316_10174603 3300031344 Bacteria 1602
136 Ga0307408_100001098 3300031548 Bacteria 20644
137 Ga0265314_10000525 3300031711 Bacteria 49392
138 Ga0265342_10000965 3300031712 Bacteria 28554
139 Ga0265342_10132082 3300031712 Unclassified 1398
140 Ga0307406_10002654 3300031901 Bacteria 9745
141 Ga0373945_0119452 3300035116 Unclassified 1047
142 Ga0373924_0050813 3300035410 Unclassified 1718
143 Ga0373933_0147747 3300035724 Unclassified 1487
144 Ga0373925_0074568 3300037068 Bacteria 2570
145 Ga0451577_0379476 3300042876 Bacteria 1283
146 Ga0466969_0000556 3300044656 Bacteria 20505
147 Ga0453684_0060649 3300044712 Bacteria 4861
148 Ga0453684_0092747 3300044712 Unclassified 3722
149 Ga0453684_0174820 3300044712 Unclassified 2527
150 Ga0451576_0313178 3300045051 Bacteria 1642
151 Ga0466967_0019426 3300045976 Bacteria 5462
152 Ga0495586_0004814 3300046535 Bacteria 7215
153 Ga0495681_0000025 3300047470 Bacteria 148216
154 Ga0496104_0000017 3300048907 Bacteria 325877
155 Ga0496105_0000009 3300048908 Bacteria 325734
156 Ga0496122_0126780 3300048925 Bacteria 1632
157 Ga0496125_0001253 3300048928 Bacteria 37864
158 Ga0496126_0002860 3300048929 Bacteria 22563
159 Ga0501034_0034568 3300049571 Bacteria 5124
160 nmdc:mga03n38_283_c1 3300050490 Bacteria 12078
161 nmdc:mga0k408_1987_c1 3300050493 Bacteria 10974
162 nmdc:mga06z11_14192_c1 3300050494 Bacteria 3523
163 nmdc:mga04h51_32980_c1 3300050495 Bacteria 1646
164 nmdc:mga05p37_171181_c1 3300050507 Bacteria 2648
165 nmdc:mga05p37_43842_c1 3300050507 Bacteria 2952
166 nmdc:mga09592_128533_c1 3300050508 Bacteria 2179
167 nmdc:mga09592_16583_c1 3300050508 Bacteria 6028
168 nmdc:mga08y16_197813_c1 3300050511 Unclassified 2083
169 nmdc:mga08y16_236158_c1 3300050511 Unclassified 1890
170 nmdc:mga0a205_289244_c1 3300050515 Bacteria 1513
171 nmdc:mga0a205_477215_c1 3300050515 Bacteria 1105
172 Ga0500646_0035060 3300053090 Bacteria 1393
173 Ga0500641_0059319 3300053096 Bacteria 1591
174 Ga0500658_0000043 3300053134 Bacteria 73664
175 2509114585 2508501123 Bacteria 6283661
176 2723849004 2721755755 Bacteria 8322773
177 2874593732 2874590934 Bacteria 8299676
178 2876772823 2876771140 Bacteria 8287509
179 2876826448 2876818435 Bacteria 8274608
180 2879077519 2879074833 Bacteria 8279565
181 2915984270 2915980308 Bacteria 6624279
182 2960683502 2960680706 Bacteria 6624464
183 2964693638 2964691889 Bacteria 6802758
184 8019630699 8019629233 Bacteria 8687553
185 Ga0209759_1023026
186 SwRhRL3b_contig_2816702
187 SwRhRL2b_contig_873095
188 JGI24741J21665_1008066
189 JGI24740J21852_10019944
190 JGI24737J22298_10000693
191 JGI25156J39149_1011191
192 JGI25157J39369_1008892
193 JGI25404J52841_10021706
194 Ga0065165_1017881
195 Ga0065704_10071588
196 Ga0065707_10002017
197 Ga0070658_10002990
198 Ga0070660_100002526
199 Ga0070660_100035536
200 Ga0070689_100066349
201 Ga0070659_100008434
202 Ga0070713_100061172
203 Ga0070701_10101401
204 Ga0070700_100064743
205 Ga0070663_100086300
206 Ga0070707_100001315
207 Ga0070707_100004786
208 Ga0070698_100026834
209 Ga0070698_100075728
210 Ga0070699_100022013
211 Ga0070699_100309327
212 Ga0068853_100243616
213 Ga0068853_100509145
214 Ga0070693_100089094
215 Ga0070665_100000440
216 Ga0070704_100062308
217 Ga0068855_100339604
218 Ga0070664_100188526
219 Ga0068857_100085484
220 Ga0068854_100035398
221 Ga0068856_100134361
222 Ga0068852_100281524
223 Ga0068859_100011084
224 Ga0068859_100189006
225 Ga0068859_100225923
226 Ga0068864_100203905
227 Ga0068851_10040773
228 Ga0068870_10036292
229 Ga0068862_100139422
230 Ga0068862_100208425
231 Ga0081540_1061743
232 Ga0070717_10052049
233 Ga0070717_10322209
234 Ga0075368_10046839
235 Ga0075363_100000557
236 Ga0070712_100317519
237 Ga0075367_10022336
238 Ga0075366_10004400
239 Ga0097621_100182200
240 Ga0075370_10073661
241 Ga0075428_100424657
242 Ga0075428_100760720
243 Ga0097620_100011083
244 Ga0097620_100189007
245 Ga0097620_100225930
246 Ga0105240_10374406
247 Ga0111539_10049098
248 Ga0111539_10057697
249 Ga0111539_10121263
250 Ga0105247_10066402
251 Ga0105247_10198983
252 Ga0114129_10036242
253 Ga0114129_10365981
254 Ga0105241_10085037
255 Ga0105241_10180025
256 Ga0105248_10200669
257 Ga0105248_10314755
258 Ga0105237_10010672
259 Ga0105237_10030347
260 Ga0105237_10440194
261 Ga0105238_10300239
262 Ga0099796_10013234
263 Ga0105239_10217380
264 Ga0105239_10352860
265 Ga0157373_10101984
266 Ga0157373_10180386
267 Ga0157371_10000197
268 Ga0157370_10244230
269 Ga0157369_10259401
270 Ga0163162_10009845
271 Ga0163162_10383434
272 Ga0157375_10344691
273 Ga0209646_1001869
274 Ga0209026_1000079
275 Ga0209130_1003867
276 Ga0209564_1039680
277 Ga0209758_1023390
278 Ga0207426_1000690
279 Ga0207656_10008213
280 Ga0207710_10001450
281 Ga0207710_10115344
282 Ga0207705_10000453
283 Ga0207684_10009988
284 Ga0207654_10000926
285 Ga0207671_10018463
286 Ga0207671_10022302
287 Ga0207671_10180475
288 Ga0207693_10253071
289 Ga0207693_10438414
290 Ga0207663_10276600
291 Ga0207657_10006136
292 Ga0207657_10009851
293 Ga0207646_10000653
294 Ga0207646_10004922
295 Ga0207694_10142092
296 Ga0207690_10002426
297 Ga0207670_10304498
298 Ga0207711_10245989
299 Ga0207679_10314949
300 Ga0207667_10047887
301 Ga0207668_10099827
302 Ga0207640_10000856
303 Ga0207639_10216499
304 Ga0207678_10099525
305 Ga0207702_10137517
306 Ga0207674_10424594
307 Ga0207698_10015611
308 Ga0268266_10000511
309 Ga0268265_10181992
310 Ga0268265_10325398
311 Ga0265323_10047912
312 Ga0265330_10006378
313 Ga0265332_10000230
314 Ga0265320_10001183
315 Ga0265325_10000310
316 Ga0265339_10004158
317 Ga0265316_10001151
318 Ga0265316_10008114
319 Ga0265316_10174603
320 Ga0307408_100001098
321 Ga0265314_10000525
322 Ga0265342_10000965
323 Ga0265342_10132082
324 Ga0307406_10002654
325 Ga0373945_0119452
326 Ga0373924_0050813
327 Ga0373933_0147747
328 Ga0373925_0074568
329 Ga0451577_0379476
330 Ga0466969_0000556
331 Ga0453684_0060649
332 Ga0453684_0092747
333 Ga0453684_0174820
334 Ga0451576_0313178
335 Ga0466967_0019426
336 Ga0495586_0004814
337 Ga0495681_0000025
338 Ga0496104_0000017
339 Ga0496105_0000009
340 Ga0496122_0126780
341 Ga0496125_0001253
342 Ga0496126_0002860
343 Ga0501034_0034568
344 nmdc:mga03n38_283_c1
345 nmdc:mga0k408_1987_c1
346 nmdc:mga06z11_14192_c1
347 nmdc:mga04h51_32980_c1
348 nmdc:mga05p37_171181_c1
349 nmdc:mga05p37_43842_c1
350 nmdc:mga09592_128533_c1
351 nmdc:mga09592_16583_c1
352 nmdc:mga08y16_197813_c1
353 nmdc:mga08y16_236158_c1
354 nmdc:mga0a205_289244_c1
355 nmdc:mga0a205_477215_c1
356 Ga0500646_0035060
357 Ga0500641_0059319
358 Ga0500658_0000043
359 2509114585
360 2723849004
361 2874593732
362 2876772823
363 2876826448
364 2879077519
365 2915984270
366 2960683502
367 2964693638
368 8019630699

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Structural Annotation

Top 5 Hits

ID Description Score Start End
6qnz-assembly1.cif.gz_A crystal structure of the site-specific dna nickase n.bspd6i e418a mutant 0.7667 78 154
5liq-assembly1.cif.gz_A the structure of c160s,c508s,c578s mutant of nt.bspd6i nicking endonuclease at 0.185 nm resolution . 0.7607 78 154
2ewf-assembly1.cif.gz_A crystal structure of the site-specific dna nickase n.bspd6i 0.7598 78 154
5liq-assembly2.cif.gz_B the structure of c160s,c508s,c578s mutant of nt.bspd6i nicking endonuclease at 0.185 nm resolution . 0.7593 78 154
5lhc-assembly1.cif.gz_B the structure of d456a mutant of nt.bspd6i nicking endonuclease at 0.24 nm resolution . 0.7571 78 154
ID Description Score Start End Superfamily
af_P9WIY5_101_213_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.8637 47 142 3.40.1350.10
af_P45423_222_339_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.8292 39 140 3.40.1350.10
af_P45423_222_339_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.7229 39 140 3.40.1350.10
af_P9WIY5_101_213_3.40.1350.10 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.7117 47 142 3.40.1350.10
2vldB02 Alpha Beta;3-Layer(aba) Sandwich;Trna Endonuclease; Chain: A, domain 1; 0.6852 47 143 3.40.1350.10
ID Description Score Start End GO Terms
AF-A0A2P7PE19-F1-model_v4 deleted 0.9794 37 154
AF-A0A7U4JH81-F1-model_v4 deleted 0.9791 78 142
AF-A0A527ZLH8-F1-model_v4 DUF4365 domain-containing protein 0.9773 28 128 GO:0003676
AF-A0A0A2BK77-F1-model_v4 Uncharacterized protein 0.9768 48 120 GO:0003676
AF-A0A4R3MFZ0-F1-model_v4 Uncharacterized protein 0.9607 217 308

Map