F282804

General Info

Members Datasets Scaffolds Average Seq Length
184 92 183 369

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100000011|Ga0307408_100000011271
Length 423
Sequence MTVIANASQLALRNEVFIAAQHPPVSARRNRESSALSTASHIVAQDANLSKVRFMRIGPHTLSSNLFLSPLAGYTNLPMRLTVRELGGLGWATTDLVNARSLIERNRTALKLVESCAEDRPLAIQLFGSVPEEMRDAAILCEEMGAQSVDINMGCPVQKVVKIGGGSAMMTELDKTAALVRGMIAAVKIPVTAKMRLGWDDDNLTAPDLARVLEDAGVAAIFVHGRTRAQGFSGTINLAGIRSVVQAVKSIPVIGNGDVTTPEAAKHMIDETGCAGVSVGRGAFYDPWIFRRTDHLLRTGELLPEPTFEERLRVMRRHFDRYCEFYGEENGSKFFRKVAPWYAKRFGPAKPFKARIITIKSRADFDAAVAEFLEWRRPFCDDAGALKPQYAPERMVASFMRDPDDPVFAREAIPVPKGPVDTW

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
8 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
11 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
12 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
13 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
15 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
19 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
28 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
29 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
30 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
31 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
32 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
33 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
34 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
37 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
38 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
39 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
40 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
41 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
42 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
49 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
50 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
51 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
52 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
53 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
54 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
55 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
56 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
57 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
58 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
59 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
60 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
61 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
62 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
63 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
66 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
69 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
70 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
71 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
84 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
85 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
89 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
90 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
91 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
92 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.46
Metatranscriptomes 0
Isolates 0.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.63
Nodule 0
Rhizoplane 0
Rhizosphere 95.11
Stem 0
Stem Tuber 0
Unclassified 3.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10007358 3300003320 Bacteria 8609
2 rootH2_10057855 3300003320 Bacteria 18176
3 rootL2_10170112 3300003322 Bacteria 7253
4 rootH1_10130718 3300003323 Bacteria 3140
5 Ga0070683_100051089 3300005329 Bacteria 3828
6 Ga0068869_100000222 3300005334 Bacteria 29697
7 Ga0070713_100084904 3300005436 Bacteria 2710
8 Ga0068857_100308873 3300005577 Bacteria 1459
9 Ga0068856_100003498 3300005614 Bacteria 15861
10 Ga0068856_100012237 3300005614 Bacteria 8313
11 Ga0068856_100013642 3300005614 Bacteria 7859
12 Ga0068859_100008986 3300005617 Bacteria 10092
13 Ga0068863_100135334 3300005841 Bacteria 2354
14 Ga0070717_10000030 3300006028 Bacteria 142934
15 Ga0097621_100005379 3300006237 Bacteria 9022
16 Ga0068871_100038559 3300006358 Bacteria 3817
17 Ga0097620_100008986 3300006931 Bacteria 10092
18 Ga0105240_10012729 3300009093 Bacteria 11593
19 Ga0105238_10047275 3300009551 Bacteria 4340
20 Ga0157375_10000179 3300013308 Bacteria 59348
21 Ga0207695_10018089 3300025913 Bacteria 8157
22 Ga0207689_10000837 3300025942 Bacteria 29676
23 Ga0207661_10111224 3300025944 Bacteria 2317
24 Ga0207667_10009470 3300025949 Bacteria 11469
25 Ga0207702_10007367 3300026078 Bacteria 9397
26 Ga0207702_10066985 3300026078 Bacteria 3080
27 Ga0207702_10097291 3300026078 Bacteria 2590
28 Ga0207641_10239736 3300026088 Bacteria 1689
29 Ga0207648_10003632 3300026089 Bacteria 16132
30 Ga0207674_10302849 3300026116 Bacteria 1547
31 Ga0265337_1002627 3300028556 Bacteria 8106
32 Ga0265337_1002750 3300028556 Bacteria 7891
33 Ga0265337_1008779 3300028556 Bacteria 3646
34 Ga0265337_1028558 3300028556 Bacteria 1673
35 Ga0265326_10012444 3300028558 Bacteria 2500
36 Ga0265319_1000016 3300028563 Bacteria 176245
37 Ga0265319_1000961 3300028563 Bacteria 18094
38 Ga0265319_1003359 3300028563 Bacteria 8375
39 Ga0265319_1013931 3300028563 Bacteria 3175
40 Ga0265334_10002496 3300028573 Bacteria 8600
41 Ga0265318_10000038 3300028577 Bacteria 136367
42 Ga0265318_10000126 3300028577 Bacteria 70529
43 Ga0265318_10004147 3300028577 Bacteria 7088
44 Ga0265318_10006526 3300028577 Bacteria 5360
45 Ga0265323_10000004 3300028653 Bacteria 197761
46 Ga0265323_10001138 3300028653 Bacteria 13687
47 Ga0265323_10002965 3300028653 Bacteria 7582
48 Ga0265322_10000340 3300028654 Bacteria 19723
49 Ga0265322_10002740 3300028654 Bacteria 5402
50 Ga0265322_10018758 3300028654 Bacteria 1988
51 Ga0265336_10000354 3300028666 Bacteria 29982
52 Ga0265336_10004448 3300028666 Bacteria 5295
53 Ga0265338_10000025 3300028800 Bacteria 296972
54 Ga0265338_10000505 3300028800 Bacteria 69700
55 Ga0265338_10011134 3300028800 Bacteria 10429
56 Ga0265338_10019282 3300028800 Bacteria 7251
57 Ga0265338_10050799 3300028800 Bacteria 3743
58 Ga0265338_10066848 3300028800 Bacteria 3108
59 Ga0265324_10000414 3300029957 Bacteria 30723
60 Ga0265324_10002695 3300029957 Bacteria 8859
61 Ga0265324_10026090 3300029957 Bacteria 2069
62 Ga0265324_10028711 3300029957 Bacteria 1960
63 Ga0265330_10008449 3300031235 Bacteria 4955
64 Ga0265330_10023603 3300031235 Bacteria 2792
65 Ga0265330_10072145 3300031235 Bacteria 1493
66 Ga0265328_10005515 3300031239 Bacteria 5417
67 Ga0265328_10041316 3300031239 Bacteria 1698
68 Ga0265320_10000071 3300031240 Bacteria 89794
69 Ga0265320_10000111 3300031240 Bacteria 70843
70 Ga0265320_10000963 3300031240 Bacteria 21405
71 Ga0265320_10007259 3300031240 Bacteria 6898
72 Ga0265320_10008152 3300031240 Bacteria 6434
73 Ga0265320_10008375 3300031240 Bacteria 6331
74 Ga0265320_10014951 3300031240 Bacteria 4400
75 Ga0265320_10028803 3300031240 Bacteria 2880
76 Ga0265325_10002798 3300031241 Bacteria 11645
77 Ga0265325_10012599 3300031241 Bacteria 4831
78 Ga0265325_10025355 3300031241 Bacteria 3220
79 Ga0265329_10041714 3300031242 Bacteria 1471
80 Ga0265340_10019266 3300031247 Bacteria 3513
81 Ga0265339_10043434 3300031249 Bacteria 2486
82 Ga0265339_10080673 3300031249 Bacteria 1720
83 Ga0265339_10101573 3300031249 Bacteria 1496
84 Ga0265331_10002852 3300031250 Bacteria 11444
85 Ga0265331_10017756 3300031250 Bacteria 3705
86 Ga0265331_10024610 3300031250 Bacteria 3044
87 Ga0265327_10000029 3300031251 Bacteria 352607
88 Ga0265327_10001302 3300031251 Bacteria 32638
89 Ga0265327_10028982 3300031251 Bacteria 3155
90 Ga0265316_10005800 3300031344 Bacteria 11915
91 Ga0265316_10006360 3300031344 Bacteria 11296
92 Ga0265316_10010487 3300031344 Bacteria 8438
93 Ga0265316_10013143 3300031344 Bacteria 7375
94 Ga0265316_10114461 3300031344 Bacteria 2040
95 Ga0307408_100000011 3300031548 Bacteria 414737
96 Ga0265313_10000261 3300031595 Bacteria 57577
97 Ga0265313_10000350 3300031595 Bacteria 50178
98 Ga0265313_10001180 3300031595 Bacteria 24966
99 Ga0265313_10010183 3300031595 Bacteria 5996
100 Ga0265313_10011398 3300031595 Bacteria 5531
101 Ga0265313_10020823 3300031595 Bacteria 3605
102 Ga0265313_10021120 3300031595 Bacteria 3568
103 Ga0307508_10000014 3300031616 Bacteria 226567
104 Ga0265314_10000072 3300031711 Bacteria 149041
105 Ga0265314_10002670 3300031711 Bacteria 17880
106 Ga0265314_10003700 3300031711 Bacteria 14659
107 Ga0265314_10033537 3300031711 Bacteria 3762
108 Ga0265314_10045069 3300031711 Bacteria 3120
109 Ga0265314_10079161 3300031711 Bacteria 2174
110 Ga0265314_10128350 3300031711 Bacteria 1585
111 Ga0265342_10004327 3300031712 Bacteria 11240
112 Ga0265342_10006100 3300031712 Bacteria 9030
113 Ga0265342_10015474 3300031712 Bacteria 5015
114 Ga0265342_10045974 3300031712 Bacteria 2625
115 Ga0265342_10048870 3300031712 Bacteria 2534
116 Ga0307410_10000003 3300031852 Bacteria 140139
117 Ga0307409_100000011 3300031995 Bacteria 65573
118 Ga0307416_100000062 3300032002 Bacteria 99295
119 Ga0373928_0000022 3300035084 Bacteria 27033
120 Ga0373944_0000026 3300035089 Bacteria 25249
121 Ga0373932_0000005 3300035112 Bacteria 259528
122 Ga0373962_0000094 3300035242 Bacteria 19314
123 Ga0373931_0000016 3300035691 Bacteria 217932
124 Ga0373935_0095774 3300035692 Bacteria 1950
125 Ga0373927_0014063 3300035695 Bacteria 5305
126 Ga0373925_0000371 3300037068 Bacteria 46792
127 Ga0395905_0000030 3300037471 Bacteria 289430
128 Ga0395905_0092593 3300037471 Bacteria 2835
129 Ga0451577_0000023 3300042876 Bacteria 419051
130 Ga0451577_0001850 3300042876 Bacteria 26973
131 Ga0451577_0066465 3300042876 Bacteria 3216
132 Ga0451577_0219654 3300042876 Bacteria 1718
133 Ga0451577_0262196 3300042876 Bacteria 1565
134 Ga0453684_0011886 3300044712 Bacteria 14497
135 Ga0453684_0015916 3300044712 Bacteria 11826
136 Ga0453684_0247950 3300044712 Bacteria 2046
137 Ga0451576_0000098 3300045051 Bacteria 220454
138 Ga0451576_0001249 3300045051 Bacteria 44695
139 Ga0451576_0020048 3300045051 Bacteria 7289
140 Ga0451576_0032386 3300045051 Bacteria 5567
141 Ga0451576_0154555 3300045051 Bacteria 2393
142 Ga0451576_0199694 3300045051 Bacteria 2089
143 Ga0451576_0516151 3300045051 Bacteria 1255
144 Ga0466967_0007926 3300045976 Bacteria 7725
145 Ga0495630_0040994 3300046517 Bacteria 3459
146 Ga0495667_0212145 3300046559 Bacteria 1237
147 Ga0495636_0020484 3300047318 Unclassified 2665
148 Ga0501031_0011271 3300049568 Bacteria 5825
149 Ga0501032_0000985 3300049569 Bacteria 22977
150 Ga0501032_0001775 3300049569 Bacteria 17026
151 Ga0501032_0004290 3300049569 Bacteria 10765
152 Ga0501033_0002207 3300049570 Bacteria 16779
153 Ga0501033_0002289 3300049570 Bacteria 16376
154 Ga0501034_0003241 3300049571 Bacteria 18607
155 Ga0501034_0188835 3300049571 Unclassified 2023
156 Ga0501037_0019984 3300049573 Bacteria 4943
157 Ga0501038_0009452 3300049574 Bacteria 8946
158 Ga0501039_0002631 3300049575 Bacteria 13407
159 Ga0501042_0111446 3300049578 Bacteria 1970
160 Ga0501043_0152381 3300049579 Bacteria 1809
161 Ga0501046_0001532 3300049580 Bacteria 22046
162 Ga0501046_0006326 3300049580 Bacteria 10496
163 Ga0501046_0023072 3300049580 Bacteria 5123
164 Ga0501047_0018984 3300049581 Bacteria 6595
165 Ga0501047_0120172 3300049581 Bacteria 2509
166 Ga0501047_0150183 3300049581 Bacteria 2206
167 Ga0501048_0029835 3300049582 Bacteria 3949
168 Ga0501068_0173273 3300049584 Bacteria 1362
169 Ga0501070_0014429 3300049586 Bacteria 6649
170 Ga0501243_006333 3300049675 Bacteria 1791
171 Ga0501083_0027002 3300049744 Bacteria 3964
172 Ga0501083_0153737 3300049744 Bacteria 1506
173 Ga0501035_0000460 3300049822 Bacteria 45701
174 Ga0501035_0083054 3300049822 Bacteria 2826
175 Ga0501035_0115892 3300049822 Bacteria 2345
176 Ga0501044_0000283 3300049823 Bacteria 64619
177 Ga0501044_0019375 3300049823 Bacteria 7281
178 Ga0501044_0038227 3300049823 Bacteria 5012
179 Ga0501044_0040068 3300049823 Bacteria 4884
180 Ga0500650_0129080 3300053098 Bacteria 1175
181 Ga0500568_0003282 3300053139 Bacteria 9130
182 Ga0500622_0024653 3300053156 Bacteria 3181
183 Ga0501082_0098529 3300060353 Bacteria 2528

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005436 Ga0070713_100084904 Ga0070713_1000849042 339
2 3300053098 Ga0500650_0129080 Ga0500650_0129080_127_1149 340
3 3300042876 Ga0451577_0000023 Ga0451577_0000023_250297_251415 341
4 3300049569 Ga0501032_0000985 Ga0501032_0000985_3495_4607 344
5 3300049580 Ga0501046_0006326 Ga0501046_0006326_4040_5152 344
6 3300049580 Ga0501046_0023072 Ga0501046_0023072_1864_2979 344
7 3300049581 Ga0501047_0018984 Ga0501047_0018984_4890_6002 344
8 3300049822 Ga0501035_0000460 Ga0501035_0000460_22684_23796 344
9 3300049823 Ga0501044_0000283 Ga0501044_0000283_37231_38343 344
10 3300003323 rootH1_10130718 rootH1_101307181 346
11 3300031240 Ga0265320_10008375 Ga0265320_100083758 346
12 3300037471 Ga0395905_0092593 Ga0395905_0092593_1031_2071 346
13 3300045976 Ga0466967_0007926 Ga0466967_0007926_694_1734 346
14 3300049744 Ga0501083_0027002 Ga0501083_0027002_1066_2175 351
15 3300005577 Ga0068857_100308873 Ga0068857_1003088731 352
16 3300031235 Ga0265330_10023603 Ga0265330_100236033 354
17 3300045051 Ga0451576_0020048 Ga0451576_0020048_3148_4257 354
18 3300045051 Ga0451576_0032386 Ga0451576_0032386_1693_2757 354
19 3300049568 Ga0501031_0011271 Ga0501031_0011271_395_1510 354
20 3300049569 Ga0501032_0001775 Ga0501032_0001775_14489_15604 354
21 3300049570 Ga0501033_0002289 Ga0501033_0002289_894_2009 354
22 3300049574 Ga0501038_0009452 Ga0501038_0009452_67_1182 354
23 3300049575 Ga0501039_0002631 Ga0501039_0002631_10787_11902 354
24 3300049578 Ga0501042_0111446 Ga0501042_0111446_150_1265 354
25 3300049581 Ga0501047_0120172 Ga0501047_0120172_52_1167 354
26 3300049582 Ga0501048_0029835 Ga0501048_0029835_2179_3294 354
27 3300049584 Ga0501068_0173273 Ga0501068_0173273_85_1200 354
28 3300049586 Ga0501070_0014429 Ga0501070_0014429_3783_4898 354
29 3300049744 Ga0501083_0153737 Ga0501083_0153737_202_1317 354
30 3300049822 Ga0501035_0083054 Ga0501035_0083054_840_1955 354
31 3300049823 Ga0501044_0038227 Ga0501044_0038227_3784_4899 354
32 3300031711 Ga0265314_10033537 Ga0265314_100335371 355
33 3300045051 Ga0451576_0001249 Ga0451576_0001249_37267_38379 355
34 3300028556 Ga0265337_1028558 Ga0265337_10285582 358
35 3300028577 Ga0265318_10006526 Ga0265318_100065264 358
36 3300028666 Ga0265336_10000354 Ga0265336_1000035414 358
37 3300028800 Ga0265338_10000505 Ga0265338_1000050543 358
38 3300029957 Ga0265324_10000414 Ga0265324_1000041415 358
39 3300031239 Ga0265328_10005515 Ga0265328_100055154 358
40 3300031240 Ga0265320_10000963 Ga0265320_1000096311 358
41 3300031251 Ga0265327_10001302 Ga0265327_100013022 358
42 3300031344 Ga0265316_10005800 Ga0265316_100058002 358
43 3300031711 Ga0265314_10000072 Ga0265314_1000007217 358
44 3300046559 Ga0495667_0212145 Ga0495667_0212145_133_1209 358
45 3300049581 Ga0501047_0150183 Ga0501047_0150183_14_1096 359
46 3300026116 Ga0207674_10302849 Ga0207674_103028491 363
47 3300028556 Ga0265337_1002750 Ga0265337_10027507 365
48 3300031240 Ga0265320_10000071 Ga0265320_1000007145 365
49 3300031242 Ga0265329_10041714 Ga0265329_100417142 365
50 3300031250 Ga0265331_10002852 Ga0265331_1000285212 365
51 3300031595 Ga0265313_10000350 Ga0265313_1000035017 365
52 3300031595 Ga0265313_10011398 Ga0265313_100113984 365
53 3300042876 Ga0451577_0066465 Ga0451577_0066465_760_1857 365
54 3300013308 Ga0157375_10000179 Ga0157375_1000017921 366
55 3300028653 Ga0265323_10000004 Ga0265323_10000004129 366
56 3300028654 Ga0265322_10002740 Ga0265322_100027406 366
57 3300031249 Ga0265339_10043434 Ga0265339_100434342 366
58 3300031344 Ga0265316_10010487 Ga0265316_100104877 366
59 3300031712 Ga0265342_10006100 Ga0265342_100061009 366
60 3300031712 Ga0265342_10048870 Ga0265342_100488703 366
61 iso_pu_bacteria 2786546940 2788433682 366
62 3300003320 rootH2_10057855 rootH2_1005785518 367
63 3300005614 Ga0068856_100003498 Ga0068856_1000034987 367
64 3300005614 Ga0068856_100012237 Ga0068856_1000122377 367
65 3300009093 Ga0105240_10012729 Ga0105240_100127291 367
66 3300025913 Ga0207695_10018089 Ga0207695_100180895 367
67 3300025949 Ga0207667_10009470 Ga0207667_100094705 367
68 3300026078 Ga0207702_10007367 Ga0207702_100073678 367
69 3300026078 Ga0207702_10097291 Ga0207702_100972912 367
70 3300028653 Ga0265323_10001138 Ga0265323_100011384 367
71 3300028654 Ga0265322_10000340 Ga0265322_1000034016 367
72 3300028666 Ga0265336_10004448 Ga0265336_100044484 367
73 3300028800 Ga0265338_10011134 Ga0265338_100111342 367
74 3300028800 Ga0265338_10050799 Ga0265338_100507992 367
75 3300028800 Ga0265338_10066848 Ga0265338_100668482 367
76 3300029957 Ga0265324_10026090 Ga0265324_100260902 367
77 3300029957 Ga0265324_10028711 Ga0265324_100287112 367
78 3300031235 Ga0265330_10072145 Ga0265330_100721452 367
79 3300031241 Ga0265325_10012599 Ga0265325_100125992 367
80 3300031249 Ga0265339_10101573 Ga0265339_101015732 367
81 3300031712 Ga0265342_10015474 Ga0265342_100154743 367
82 3300035084 Ga0373928_0000022 Ga0373928_0000022_20109_21338 367
83 3300035089 Ga0373944_0000026 Ga0373944_0000026_8357_9586 367
84 3300035112 Ga0373932_0000005 Ga0373932_0000005_138052_139281 367
85 3300035242 Ga0373962_0000094 Ga0373962_0000094_151_1380 367
86 3300035691 Ga0373931_0000016 Ga0373931_0000016_120248_121477 367
87 3300035692 Ga0373935_0095774 Ga0373935_0095774_104_1333 367
88 3300035695 Ga0373927_0014063 Ga0373927_0014063_2730_3959 367
89 3300037068 Ga0373925_0000371 Ga0373925_0000371_39319_40548 367
90 3300042876 Ga0451577_0001850 Ga0451577_0001850_6080_7183 367
91 3300005617 Ga0068859_100008986 Ga0068859_1000089863 368
92 3300005841 Ga0068863_100135334 Ga0068863_1001353344 368
93 3300006931 Ga0097620_100008986 Ga0097620_1000089863 368
94 3300026088 Ga0207641_10239736 Ga0207641_102397362 368
95 3300028558 Ga0265326_10012444 Ga0265326_100124442 368
96 3300028563 Ga0265319_1000016 Ga0265319_100001662 368
97 3300028653 Ga0265323_10002965 Ga0265323_100029656 368
98 3300028800 Ga0265338_10000025 Ga0265338_10000025257 368
99 3300031235 Ga0265330_10008449 Ga0265330_100084494 368
100 3300031239 Ga0265328_10041316 Ga0265328_100413161 368
101 3300031240 Ga0265320_10028803 Ga0265320_100288032 368
102 3300031249 Ga0265339_10080673 Ga0265339_100806731 368
103 3300031251 Ga0265327_10028982 Ga0265327_100289822 368
104 3300031344 Ga0265316_10006360 Ga0265316_100063603 368
105 3300031344 Ga0265316_10114461 Ga0265316_101144612 368
106 3300031595 Ga0265313_10021120 Ga0265313_100211202 368
107 3300044712 Ga0453684_0011886 Ga0453684_0011886_3910_5016 368
108 3300045051 Ga0451576_0516151 Ga0451576_0516151_40_1146 368
109 3300049823 Ga0501044_0019375 Ga0501044_0019375_3019_4125 368
110 3300005334 Ga0068869_100000222 Ga0068869_10000022222 369
111 3300006237 Ga0097621_100005379 Ga0097621_1000053793 369
112 3300006358 Ga0068871_100038559 Ga0068871_1000385594 369
113 3300009551 Ga0105238_10047275 Ga0105238_100472753 369
114 3300025942 Ga0207689_10000837 Ga0207689_1000083722 369
115 3300026089 Ga0207648_10003632 Ga0207648_1000363213 369
116 3300028556 Ga0265337_1002627 Ga0265337_10026279 369
117 3300028563 Ga0265319_1013931 Ga0265319_10139312 369
118 3300028800 Ga0265338_10019282 Ga0265338_100192825 369
119 3300031548 Ga0307408_100000011 Ga0307408_100000011271 369
120 3300031852 Ga0307410_10000003 Ga0307410_1000000376 369
121 3300031995 Ga0307409_100000011 Ga0307409_10000001133 369
122 3300032002 Ga0307416_100000062 Ga0307416_10000006256 369
123 3300037471 Ga0395905_0000030 Ga0395905_0000030_148270_149379 369
124 3300042876 Ga0451577_0219654 Ga0451577_0219654_101_1210 369
125 3300042876 Ga0451577_0262196 Ga0451577_0262196_91_1200 369
126 3300044712 Ga0453684_0015916 Ga0453684_0015916_7763_8872 369
127 3300046517 Ga0495630_0040994 Ga0495630_0040994_2158_3267 369
128 3300049675 Ga0501243_006333 Ga0501243_006333_144_1253 369
129 3300003320 rootH2_10007358 rootH2_100073584 370
130 3300003322 rootL2_10170112 rootL2_101701124 370
131 3300005329 Ga0070683_100051089 Ga0070683_1000510894 370
132 3300005614 Ga0068856_100013642 Ga0068856_1000136421 370
133 3300006028 Ga0070717_10000030 Ga0070717_1000003081 370
134 3300025944 Ga0207661_10111224 Ga0207661_101112242 370
135 3300026078 Ga0207702_10066985 Ga0207702_100669851 370
136 3300028556 Ga0265337_1008779 Ga0265337_10087792 370
137 3300028563 Ga0265319_1000961 Ga0265319_100096118 370
138 3300028563 Ga0265319_1003359 Ga0265319_10033596 370
139 3300028573 Ga0265334_10002496 Ga0265334_100024965 370
140 3300028577 Ga0265318_10000038 Ga0265318_10000038111 370
141 3300028577 Ga0265318_10000126 Ga0265318_100001268 370
142 3300028577 Ga0265318_10004147 Ga0265318_100041475 370
143 3300028654 Ga0265322_10018758 Ga0265322_100187582 370
144 3300029957 Ga0265324_10002695 Ga0265324_100026957 370
145 3300031240 Ga0265320_10000111 Ga0265320_100001117 370
146 3300031240 Ga0265320_10007259 Ga0265320_100072593 370
147 3300031240 Ga0265320_10008152 Ga0265320_100081522 370
148 3300031240 Ga0265320_10014951 Ga0265320_100149515 370
149 3300031241 Ga0265325_10002798 Ga0265325_100027986 370
150 3300031241 Ga0265325_10025355 Ga0265325_100253553 370
151 3300031247 Ga0265340_10019266 Ga0265340_100192662 370
152 3300031250 Ga0265331_10017756 Ga0265331_100177563 370
153 3300031250 Ga0265331_10024610 Ga0265331_100246102 370
154 3300031251 Ga0265327_10000029 Ga0265327_10000029147 370
155 3300031344 Ga0265316_10013143 Ga0265316_100131432 370
156 3300031595 Ga0265313_10000261 Ga0265313_1000026127 370
157 3300031595 Ga0265313_10001180 Ga0265313_100011806 370
158 3300031595 Ga0265313_10010183 Ga0265313_100101831 370
159 3300031595 Ga0265313_10020823 Ga0265313_100208234 370
160 3300031616 Ga0307508_10000014 Ga0307508_1000001432 370
161 3300031711 Ga0265314_10002670 Ga0265314_100026707 370
162 3300031711 Ga0265314_10003700 Ga0265314_1000370015 370
163 3300031711 Ga0265314_10045069 Ga0265314_100450692 370
164 3300031711 Ga0265314_10079161 Ga0265314_100791612 370
165 3300031711 Ga0265314_10128350 Ga0265314_101283501 370
166 3300031712 Ga0265342_10004327 Ga0265342_100043273 370
167 3300031712 Ga0265342_10045974 Ga0265342_100459742 370
168 3300044712 Ga0453684_0247950 Ga0453684_0247950_138_1250 370
169 3300045051 Ga0451576_0000098 Ga0451576_0000098_148484_149596 370
170 3300045051 Ga0451576_0154555 Ga0451576_0154555_601_1713 370
171 3300045051 Ga0451576_0199694 Ga0451576_0199694_727_1839 370
172 3300047318 Ga0495636_0020484 Ga0495636_0020484_544_1674 370
173 3300049569 Ga0501032_0004290 Ga0501032_0004290_9420_10532 370
174 3300049570 Ga0501033_0002207 Ga0501033_0002207_6300_7412 370
175 3300049571 Ga0501034_0003241 Ga0501034_0003241_16891_18003 370
176 3300049571 Ga0501034_0188835 Ga0501034_0188835_552_1697 370
177 3300049573 Ga0501037_0019984 Ga0501037_0019984_213_1325 370
178 3300049579 Ga0501043_0152381 Ga0501043_0152381_514_1626 370
179 3300049580 Ga0501046_0001532 Ga0501046_0001532_14287_15399 370
180 3300049822 Ga0501035_0115892 Ga0501035_0115892_310_1422 370
181 3300049823 Ga0501044_0040068 Ga0501044_0040068_1580_2692 370
182 3300053139 Ga0500568_0003282 Ga0500568_0003282_1991_3103 370
183 3300053156 Ga0500622_0024653 Ga0500622_0024653_457_1569 370
184 3300060353 Ga0501082_0098529 Ga0501082_0098529_521_1636 370

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01207

Dus

Dihydrouridine synthase (Dus)

67

375

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.9314 1 318
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.9291 12 318
1vhn-assembly1.cif.gz_A crystal structure of a putative flavin oxidoreductase with flavin 0.9059 12 318
6ei9-assembly2.cif.gz_B crystal structure of e. coli trna-dihydrouridine synthase b (dusb) 0.9023 1 318
2hne-assembly1.cif.gz_A crystal structure of l-fuconate dehydratase from xanthomonas campestris pv. campestris str. atcc 33913 0.8294 74 225
ID Description Score Start End Superfamily
af_Q9VIS4_253_495_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9367 6 241 3.20.20.70
af_P0ABT5_6_247_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9342 6 249 3.20.20.70
af_P9WNS7_19_267_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9328 7 239 3.20.20.70
af_P0ABT5_6_247_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9305 6 249 3.20.20.70
af_Q54ES7_56_285_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9304 13 237 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A2V5TT64-F1-model_v4 tRNA dihydrouridine synthase DusB 0.971 1 350 GO:0000049
GO:0017150
GO:0050660
AF-A0A354DK95-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9674 154 290 GO:0003723
GO:0017150
AF-A0A2V5TT64-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9656 1 350 GO:0000049
GO:0017150
GO:0050660
AF-A0A7V6BD64-F1-model_v4 tRNA dihydrouridine synthase DusB 0.9634 1 249 GO:0003723
GO:0017150
GO:0050660
AF-A0A6I7PJF4-F1-model_v4 tRNA-dihydrouridine synthase (EC 1.3.1.-) 0.9615 1 321 GO:0000049
GO:0017150
GO:0050660

Feature Viewer

pLDDT pTM Quality
87.18 0.85 High
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Predicted Structure (AlphaFold2)

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