F283387

General Info

Members Datasets Scaffolds Average Seq Length
184 111 368 476

Family's Representative Sequence

Representative Sequence 3300053153|Ga0500616_0005989|Ga0500616_0005989_3211_4710
Length 499
Sequence MTLRFHNTLTKKVDDFHPISEGKVTLYTCGPTVYDHLHVGNWAAYIYWDTLVRTLIANGLDVDRVMNLTDVGHLTGENEGDADTGEDKLEKGARREGKTAWDIAEFYAEDFLAGIEKLGLIMPEHVVRATDFIPQQLDLIRTLKEKGFTYQIDDGIYFDTSKFPSYADFAGLDLEAQKAGARVAYNEEKRNPSDFALWKFTPKGEKRDMEWETPSDLLEASSFEKNDREDSQKIMGFPGWHLECSAMAMSILGKTIDIHTGGIDHIPVHHTNEIAQSEAASNQVFAHYWLHNNHLKVDGTKISKSLGNGFTLDDLKNRGYSPLDYRMFILQGHYKNEGNFTFENLSGARNRLHHWRNVAALRHQAHDTLAQNMSKETDPSLAVGGLLKEALSDDLNTPEALRIIDEAFSHIESHGIDRIDVHALNDLLATIDELLGLQLLSTTPDIDDEAKQLIVKRERARDEKNWQVSDEIRDQIKQKGIIIRDTPDGSVWEYAEQNA

Samples

Sample ID Description Type Environment
1 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
2 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
6 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
72 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
74 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
75 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
76 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
83 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
84 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
85 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
86 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
87 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
88 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
89 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
90 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
91 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
92 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
93 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
100 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
101 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
102 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
103 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
104 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
105 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
106 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
107 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
108 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
109 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
110 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
111 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.37
Nodule 0
Rhizoplane 0.54
Rhizosphere 73.37
Stem 0
Stem Tuber 0
Unclassified 4.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500616_0005989 3300053153 Bacteria 8099
2 JGI24741J21665_1000389 3300001915 Bacteria 13204
3 JGI24740J21852_10009698 3300001979 Bacteria 3753
4 JGI24739J22299_10000170 3300001989 Bacteria 21576
5 JGI24737J22298_10000194 3300001990 Bacteria 19704
6 JGI24735J21928_10000514 3300002067 Bacteria 13699
7 rootH1_10010401 3300003316 Bacteria 137135
8 rootH2_10000244 3300003320 Bacteria 697651
9 Ga0070658_10000012 3300005327 Bacteria 277871
10 Ga0070658_10000063 3300005327 Bacteria 107300
11 Ga0070683_100085069 3300005329 Unclassified 2964
12 Ga0070660_100002208 3300005339 Bacteria 13410
13 Ga0070660_100015116 3300005339 Bacteria 5569
14 Ga0070661_100005196 3300005344 Bacteria 8961
15 Ga0070659_100007884 3300005366 Bacteria 7753
16 Ga0070659_100011109 3300005366 Bacteria 6652
17 Ga0070678_100000678 3300005456 Bacteria 16767
18 Ga0070662_100001398 3300005457 Bacteria 14877
19 Ga0070685_10004029 3300005466 Bacteria 7415
20 Ga0070684_100095247 3300005535 Bacteria 2652
21 Ga0068853_100025126 3300005539 Bacteria 4998
22 Ga0070672_100097729 3300005543 Bacteria 2377
23 Ga0068855_100000002 3300005563 Bacteria 616881
24 Ga0068855_100000107 3300005563 Bacteria 103580
25 Ga0068855_100038194 3300005563 Bacteria 5705
26 Ga0070664_100000051 3300005564 Bacteria 70646
27 Ga0068857_100001972 3300005577 Bacteria 16590
28 Ga0068857_100008810 3300005577 Bacteria 8737
29 Ga0068854_100004675 3300005578 Bacteria 8631
30 Ga0068856_100000018 3300005614 Bacteria 151165
31 Ga0068856_100000707 3300005614 Bacteria 36271
32 Ga0068852_100000089 3300005616 Bacteria 64388
33 Ga0075365_10001052 3300006038 Bacteria 11926
34 Ga0075368_10000001 3300006042 Bacteria 62048
35 Ga0075368_10002599 3300006042 Bacteria 5918
36 Ga0075363_100000433 3300006048 Bacteria 13049
37 Ga0075363_100003562 3300006048 Bacteria 6654
38 Ga0075364_10000046 3300006051 Bacteria 43174
39 Ga0075364_10000708 3300006051 Bacteria 17495
40 Ga0075364_10013118 3300006051 Bacteria 5085
41 Ga0075367_10000096 3300006178 Bacteria 24367
42 Ga0075367_10000944 3300006178 Bacteria 11821
43 Ga0075366_10000005 3300006195 Bacteria 107438
44 Ga0075366_10000136 3300006195 Bacteria 30742
45 Ga0075366_10000229 3300006195 Bacteria 24965
46 Ga0097621_100000003 3300006237 Bacteria 164830
47 Ga0097621_100057086 3300006237 Bacteria 3191
48 Ga0075370_10004696 3300006353 Bacteria 6669
49 Ga0068871_100000017 3300006358 Bacteria 91144
50 Ga0068871_100019183 3300006358 Bacteria 5219
51 Ga0068865_100014423 3300006881 Bacteria 5020
52 Ga0105240_10000004 3300009093 Bacteria 708156
53 Ga0105240_10011284 3300009093 Bacteria 12453
54 Ga0105241_10008105 3300009174 Bacteria 7732
55 Ga0105237_10000001 3300009545 Bacteria 1009213
56 Ga0105238_10038874 3300009551 Bacteria 4831
57 Ga0105032_100001 3300009979 Bacteria 472394
58 Ga0105032_101273 3300009979 Bacteria 2324
59 Ga0105239_10000583 3300010375 Bacteria 52203
60 Ga0105246_10004317 3300011119 Bacteria 8648
61 Ga0157373_10019368 3300013100 Bacteria 4954
62 Ga0157373_10055272 3300013100 Unclassified 2820
63 Ga0157371_10001166 3300013102 Bacteria 28219
64 Ga0157371_10001551 3300013102 Bacteria 23621
65 Ga0157371_10003144 3300013102 Bacteria 15220
66 Ga0157371_10119876 3300013102 Unclassified 1870
67 Ga0157370_10000169 3300013104 Bacteria 80632
68 Ga0157370_10001485 3300013104 Bacteria 29028
69 Ga0157370_10012523 3300013104 Bacteria 8793
70 Ga0157370_10079401 3300013104 Unclassified 3090
71 Ga0157370_10175004 3300013104 Unclassified 1995
72 Ga0157369_10000009 3300013105 Bacteria 303674
73 Ga0157369_10000466 3300013105 Bacteria 53695
74 Ga0157369_10000752 3300013105 Bacteria 41774
75 Ga0157369_10003471 3300013105 Bacteria 18696
76 Ga0157374_10121847 3300013296 Bacteria 2517
77 Ga0157374_10219833 3300013296 Bacteria 1864
78 Ga0157372_10000002 3300013307 Bacteria 687862
79 Ga0157372_10003915 3300013307 Bacteria 15996
80 Ga0157372_10104950 3300013307 Bacteria 3232
81 Ga0157377_10002257 3300014745 Bacteria 8475
82 Ga0157377_10002880 3300014745 Bacteria 7688
83 Ga0157377_10009425 3300014745 Bacteria 4791
84 Ga0157376_10000035 3300014969 Bacteria 151993
85 Ga0157376_10015392 3300014969 Bacteria 5777
86 Ga0207647_10001479 3300025904 Bacteria 18046
87 Ga0207647_10001910 3300025904 Bacteria 15962
88 Ga0207705_10000038 3300025909 Bacteria 193812
89 Ga0207705_10000093 3300025909 Bacteria 107314
90 Ga0207705_10008837 3300025909 Bacteria 7342
91 Ga0207705_10014594 3300025909 Bacteria 5653
92 Ga0207654_10006539 3300025911 Bacteria 5864
93 Ga0207654_10078400 3300025911 Bacteria 1982
94 Ga0207695_10000009 3300025913 Bacteria 1034276
95 Ga0207695_10008923 3300025913 Bacteria 12481
96 Ga0207671_10000003 3300025914 Bacteria 1065461
97 Ga0207657_10000293 3300025919 Bacteria 53320
98 Ga0207657_10005596 3300025919 Bacteria 13123
99 Ga0207657_10024268 3300025919 Bacteria 5622
100 Ga0207694_10036532 3300025924 Bacteria 3771
101 Ga0207690_10039708 3300025932 Bacteria 3072
102 Ga0207706_10000209 3300025933 Bacteria 64890
103 Ga0207704_10009464 3300025938 Bacteria 4702
104 Ga0207691_10115895 3300025940 Bacteria 2378
105 Ga0207661_10012829 3300025944 Bacteria 6106
106 Ga0207679_10000061 3300025945 Bacteria 98709
107 Ga0207679_10125397 3300025945 Bacteria 2051
108 Ga0207667_10000005 3300025949 Bacteria 715503
109 Ga0207667_10000128 3300025949 Bacteria 116173
110 Ga0207667_10000660 3300025949 Bacteria 44705
111 Ga0207640_10003331 3300025981 Bacteria 8655
112 Ga0207639_10026190 3300026041 Bacteria 4237
113 Ga0207702_10000179 3300026078 Bacteria 76263
114 Ga0207702_10000902 3300026078 Bacteria 30852
115 Ga0207674_10001262 3300026116 Bacteria 33049
116 Ga0207674_10014379 3300026116 Bacteria 8744
117 Ga0207683_10020901 3300026121 Bacteria 5602
118 Ga0207698_10000122 3300026142 Bacteria 48775
119 Ga0209813_10000006 3300027866 Bacteria 113121
120 Ga0209813_10001758 3300027866 Bacteria 4876
121 Ga0209974_10001099 3300027876 Bacteria 9578
122 Ga0265319_1015115 3300028563 Bacteria 3003
123 Ga0265319_1018318 3300028563 Bacteria 2638
124 Ga0265338_10006726 3300028800 Bacteria 14516
125 Ga0265338_10021194 3300028800 Bacteria 6788
126 Ga0307509_10025405 3300031507 Bacteria 6614
127 Ga0265342_10019809 3300031712 Bacteria 4328
128 Ga0307516_10000021 3300031730 Bacteria 192678
129 Ga0395900_0000001 3300037418 Bacteria 931146
130 Ga0395900_0002080 3300037418 Bacteria 22449
131 Ga0395900_0070426 3300037418 Unclassified 3595
132 Ga0395900_0133893 3300037418 Bacteria 2539
133 Ga0395898_0000002 3300037466 Bacteria 931013
134 Ga0395898_0002976 3300037466 Bacteria 19261
135 Ga0395905_0007126 3300037471 Bacteria 11176
136 Ga0395901_0000072 3300038443 Bacteria 140394
137 Ga0395901_0071906 3300038443 Unclassified 3605
138 Ga0439461_0001123 3300041410 Bacteria 4058
139 Ga0439463_019109 3300042016 Unclassified 1706
140 Ga0439464_0000076 3300042439 Bacteria 13949
141 Ga0453683_0021536 3300044673 Bacteria 4115
142 Ga0453683_0104333 3300044673 Bacteria 1781
143 Ga0466965_0000112 3300044683 Bacteria 23154
144 Ga0453684_0000681 3300044712 Bacteria 121111
145 Ga0453684_0150161 3300044712 Bacteria 2770
146 Ga0453684_0170972 3300044712 Bacteria 2561
147 Ga0451576_0000051 3300045051 Bacteria 313453
148 Ga0451576_0010842 3300045051 Bacteria 10430
149 Ga0495638_0000189 3300046460 Bacteria 93205
150 Ga0495658_0130493 3300046683 Unclassified 1529
151 Ga0495672_0000016 3300047320 Bacteria 500601
152 Ga0495672_0034619 3300047320 Bacteria 3118
153 Ga0496113_0032323 3300048916 Bacteria 3804
154 Ga0496118_0053553 3300048921 Bacteria 3066
155 Ga0501034_0000090 3300049571 Bacteria 165117
156 Ga0501034_0150426 3300049571 Bacteria 2304
157 Ga0501037_0000001 3300049573 Bacteria 753276
158 Ga0501038_0019811 3300049574 Bacteria 6056
159 nmdc:mga03n38_18_c1 3300050490 Bacteria 41421
160 nmdc:mga00v17_14989_c1 3300050491 Bacteria 4342
161 nmdc:mga00v17_1734_c2 3300050491 Bacteria 7313
162 nmdc:mga00v17_2367_c1 3300050491 Bacteria 9649
163 nmdc:mga00v17_30_c1 3300050491 Bacteria 88199
164 nmdc:mga0yw44_6_c1 3300050492 Bacteria 272478
165 nmdc:mga0yw44_915_c1 3300050492 Bacteria 11164
166 nmdc:mga0k408_2444_c1 3300050493 Bacteria 6979
167 nmdc:mga0k408_34_c2 3300050493 Bacteria 12796
168 nmdc:mga0k408_36_c1 3300050493 Bacteria 72881
169 nmdc:mga0k408_42_c2 3300050493 Bacteria 47551
170 nmdc:mga06z11_1124_c1 3300050494 Bacteria 9737
171 nmdc:mga06z11_1_c1 3300050494 Bacteria 196297
172 nmdc:mga04h51_689_c1 3300050495 Bacteria 7867
173 nmdc:mga04h51_6_c1 3300050495 Bacteria 126812
174 nmdc:mga07m45_48411_c1 3300050496 Bacteria 2391
175 nmdc:mga0sz30_33004_c1 3300050516 Bacteria 2150
176 Ga0500651_0000001 3300053093 Bacteria 529808
177 Ga0500651_0000032 3300053093 Bacteria 110364
178 Ga0500562_000009 3300053108 Bacteria 187538
179 Ga0500569_000013 3300053109 Bacteria 50700
180 Ga0500593_042363 3300053117 Bacteria 2033
181 Ga0500594_0000004 3300053118 Bacteria 174508
182 Ga0500577_0000331 3300053142 Bacteria 12256
183 Ga0500577_0006049 3300053142 Bacteria 3306
184 Ga0500588_0000033 3300053146 Bacteria 27588
185 Ga0500616_0005989
186 JGI24741J21665_1000389
187 JGI24740J21852_10009698
188 JGI24739J22299_10000170
189 JGI24737J22298_10000194
190 JGI24735J21928_10000514
191 rootH1_10010401
192 rootH2_10000244
193 Ga0070658_10000012
194 Ga0070658_10000063
195 Ga0070683_100085069
196 Ga0070660_100002208
197 Ga0070660_100015116
198 Ga0070661_100005196
199 Ga0070659_100007884
200 Ga0070659_100011109
201 Ga0070678_100000678
202 Ga0070662_100001398
203 Ga0070685_10004029
204 Ga0070684_100095247
205 Ga0068853_100025126
206 Ga0070672_100097729
207 Ga0068855_100000002
208 Ga0068855_100000107
209 Ga0068855_100038194
210 Ga0070664_100000051
211 Ga0068857_100001972
212 Ga0068857_100008810
213 Ga0068854_100004675
214 Ga0068856_100000018
215 Ga0068856_100000707
216 Ga0068852_100000089
217 Ga0075365_10001052
218 Ga0075368_10000001
219 Ga0075368_10002599
220 Ga0075363_100000433
221 Ga0075363_100003562
222 Ga0075364_10000046
223 Ga0075364_10000708
224 Ga0075364_10013118
225 Ga0075367_10000096
226 Ga0075367_10000944
227 Ga0075366_10000005
228 Ga0075366_10000136
229 Ga0075366_10000229
230 Ga0097621_100000003
231 Ga0097621_100057086
232 Ga0075370_10004696
233 Ga0068871_100000017
234 Ga0068871_100019183
235 Ga0068865_100014423
236 Ga0105240_10000004
237 Ga0105240_10011284
238 Ga0105241_10008105
239 Ga0105237_10000001
240 Ga0105238_10038874
241 Ga0105032_100001
242 Ga0105032_101273
243 Ga0105239_10000583
244 Ga0105246_10004317
245 Ga0157373_10019368
246 Ga0157373_10055272
247 Ga0157371_10001166
248 Ga0157371_10001551
249 Ga0157371_10003144
250 Ga0157371_10119876
251 Ga0157370_10000169
252 Ga0157370_10001485
253 Ga0157370_10012523
254 Ga0157370_10079401
255 Ga0157370_10175004
256 Ga0157369_10000009
257 Ga0157369_10000466
258 Ga0157369_10000752
259 Ga0157369_10003471
260 Ga0157374_10121847
261 Ga0157374_10219833
262 Ga0157372_10000002
263 Ga0157372_10003915
264 Ga0157372_10104950
265 Ga0157377_10002257
266 Ga0157377_10002880
267 Ga0157377_10009425
268 Ga0157376_10000035
269 Ga0157376_10015392
270 Ga0207647_10001479
271 Ga0207647_10001910
272 Ga0207705_10000038
273 Ga0207705_10000093
274 Ga0207705_10008837
275 Ga0207705_10014594
276 Ga0207654_10006539
277 Ga0207654_10078400
278 Ga0207695_10000009
279 Ga0207695_10008923
280 Ga0207671_10000003
281 Ga0207657_10000293
282 Ga0207657_10005596
283 Ga0207657_10024268
284 Ga0207694_10036532
285 Ga0207690_10039708
286 Ga0207706_10000209
287 Ga0207704_10009464
288 Ga0207691_10115895
289 Ga0207661_10012829
290 Ga0207679_10000061
291 Ga0207679_10125397
292 Ga0207667_10000005
293 Ga0207667_10000128
294 Ga0207667_10000660
295 Ga0207640_10003331
296 Ga0207639_10026190
297 Ga0207702_10000179
298 Ga0207702_10000902
299 Ga0207674_10001262
300 Ga0207674_10014379
301 Ga0207683_10020901
302 Ga0207698_10000122
303 Ga0209813_10000006
304 Ga0209813_10001758
305 Ga0209974_10001099
306 Ga0265319_1015115
307 Ga0265319_1018318
308 Ga0265338_10006726
309 Ga0265338_10021194
310 Ga0307509_10025405
311 Ga0265342_10019809
312 Ga0307516_10000021
313 Ga0395900_0000001
314 Ga0395900_0002080
315 Ga0395900_0070426
316 Ga0395900_0133893
317 Ga0395898_0000002
318 Ga0395898_0002976
319 Ga0395905_0007126
320 Ga0395901_0000072
321 Ga0395901_0071906
322 Ga0439461_0001123
323 Ga0439463_019109
324 Ga0439464_0000076
325 Ga0453683_0021536
326 Ga0453683_0104333
327 Ga0466965_0000112
328 Ga0453684_0000681
329 Ga0453684_0150161
330 Ga0453684_0170972
331 Ga0451576_0000051
332 Ga0451576_0010842
333 Ga0495638_0000189
334 Ga0495658_0130493
335 Ga0495672_0000016
336 Ga0495672_0034619
337 Ga0496113_0032323
338 Ga0496118_0053553
339 Ga0501034_0000090
340 Ga0501034_0150426
341 Ga0501037_0000001
342 Ga0501038_0019811
343 nmdc:mga03n38_18_c1
344 nmdc:mga00v17_14989_c1
345 nmdc:mga00v17_1734_c2
346 nmdc:mga00v17_2367_c1
347 nmdc:mga00v17_30_c1
348 nmdc:mga0yw44_6_c1
349 nmdc:mga0yw44_915_c1
350 nmdc:mga0k408_2444_c1
351 nmdc:mga0k408_34_c2
352 nmdc:mga0k408_36_c1
353 nmdc:mga0k408_42_c2
354 nmdc:mga06z11_1124_c1
355 nmdc:mga06z11_1_c1
356 nmdc:mga04h51_689_c1
357 nmdc:mga04h51_6_c1
358 nmdc:mga07m45_48411_c1
359 nmdc:mga0sz30_33004_c1
360 Ga0500651_0000001
361 Ga0500651_0000032
362 Ga0500562_000009
363 Ga0500569_000013
364 Ga0500593_042363
365 Ga0500594_0000004
366 Ga0500577_0000331
367 Ga0500577_0006049
368 Ga0500588_0000033

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF23493

443

492

0.95

PF01406

tRNA-synt_1e

tRNA synthetases class I (C) catalytic domain

15

350

0.92

PF09190

DALR_2

DALR domain

387

440

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1li7-assembly1.cif.gz_A crystal structure of cysteinyl-trna synthetase with cysteine substrate bound 0.9046 1 408
8hfo-assembly1.cif.gz_A crystal structure of mycobacterium smegmatis mshc in complex with compound 7d 0.8945 1 409
3tqo-assembly1.cif.gz_A structure of the cysteinyl-trna synthetase (cyss) from coxiella burnetii. 0.8907 2 413
8qhp-assembly1.cif.gz_B cysteine trna ligase homodimer 0.89 1 408
1li5-assembly2.cif.gz_B crystal structure of cysteinyl-trna synthetase 0.8893 1 406
ID Description Score Start End Superfamily
3sp1A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9463 1 317 3.40.50.620
1li7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9395 16 317 3.40.50.620
1li7A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9362 16 317 3.40.50.620
3sp1A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.936 1 317 3.40.50.620
af_Q2G2M6_1_304_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9343 1 317 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A0G1E833-F1-model_v4 Cysteine-tRNA ligase 0.9724 223 334 GO:0004817
GO:0005524
GO:0005829
GO:0006423
AF-A0A5C7J8Y2-F1-model_v4 Uncharacterized protein 0.9595 278 467 GO:0004817
GO:0005524
GO:0005737
GO:0006423
AF-A0A7X4ASJ4-F1-model_v4 Cysteine--tRNA ligase (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS) 0.9576 1 466 GO:0004817
GO:0005524
GO:0005829
GO:0006423
GO:0008270
AF-A0A7X4ASJ4-F1-model_v4 Cysteine--tRNA ligase (EC 6.1.1.16) (Cysteinyl-tRNA synthetase) (CysRS) 0.9536 1 466 GO:0004817
GO:0005524
GO:0005829
GO:0006423
GO:0008270
AF-A0A3D5H8V3-F1-model_v4 Cysteine--tRNA ligase 0.9521 1 161 GO:0004817
GO:0005524
GO:0005829
GO:0006423

Map