F283445

General Info

Members Datasets Scaffolds Average Seq Length
184 159 134 654

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2738543034|2739364179
Length 714
Sequence IEMTKSIDTVLIANRGEIAVRVIRTLRRLGIRSVAVYSDADVDALHVREADVAVRIGPAAARESYLVIDKVIAAATATGAQGIHPGYGFLSENADFAAACSAAGIAFLGPPVKAIEVMGDKITAKNAVSAFGVPVVPGIARPGLTDEQLIAAAPDIGYPILVKPSAGGGGKGMRLVEQESELASALASARREAASSFGDDTLFLERFVLTPRHIEVQILADEHGNIVHLGERECSLQRRHQKVIEEAPSLLLDPATRARIGEAACNTARSVDYTGAGTVEFIVSADSPDEFFFMEMNTRLQVEHPVTEMVTGLDLVEWQIRVASGEKLAFEQEDITLTGHAIEARVYAEDPGRGFLPTGGEVLGLGEPVGEGIRVDSGLAVGTVVGSNYDPMLSKVIACAEDRPAALRKLDRALAATSVQGVGTNIEFVRFLLADDDVVAGNLDTGLLDRRVESFEAAPAPESVLIAAAAALWVSAWPAGSADPWDVPTGWRVGADVPTVMRLSSGSGAGSGASHVAITGSPASATVSVDGAVSVDGAVSVGGAASRSLAVTEAGSRLAVILDGVRSTFSVAQTPNTGTVWISGAEGTWPITRIQEASTKGDDADDGDTDITSPMPGAVIAIGPTAGQQVSAGEMVVVVEAMKMEHALTAPYDGTVELSVAVGDQVRVDQLLARVARASVDSVGNTGSLEYTAVLENTAVLENTEAPENGDAPS

Samples

Sample ID Description Type Environment
1 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
2 2558860280 Kutzneria sp. 744 Isolate Unclassified
3 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
4 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
5 2643221557 Ensifer sp. Root558 Isolate Unclassified
6 2643221610 Ensifer sp. Root74 Isolate Unclassified
7 2643221618 Ensifer sp. Root231 Isolate Unclassified
8 2643221626 Ensifer sp. Root31 Isolate Unclassified
9 2643221655 Ensifer sp. Root1252 Isolate Unclassified
10 2643221659 Ensifer sp. Root127 Isolate Unclassified
11 2643221668 Ensifer sp. Root423 Isolate Unclassified
12 2643221675 Ensifer sp. Root1298 Isolate Unclassified
13 2643221680 Ensifer sp. Root1312 Isolate Unclassified
14 2643221692 Nocardia sp. Root136 Isolate Unclassified
15 2643221698 Ensifer sp. Root142 Isolate Unclassified
16 2643221712 Ensifer sp. Root258 Isolate Unclassified
17 2643221723 Ensifer sp. Root278 Isolate Unclassified
18 2643221726 Ensifer sp. Root954 Isolate Unclassified
19 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
20 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
21 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
22 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
23 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
24 2773857759 Microbacterium sp. 1294 Isolate Unclassified
25 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
26 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
27 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
28 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
29 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
30 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
31 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
32 2891326441 Actinokineospora pegani TRM65233 Isolate Unclassified
33 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
34 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
35 2904765812 Rhodococcus fascians 1590 Isolate Rhizosphere
36 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
37 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
38 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
39 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
40 2922554459 Rhodococcus sp. 66b Isolate Unclassified
41 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
42 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
43 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
44 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
45 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
46 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
47 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere
48 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
49 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
50 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
51 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
52 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
53 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
54 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
55 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
56 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
57 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
58 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
59 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
60 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
61 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
62 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
63 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
64 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
65 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
66 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
67 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
68 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
69 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
70 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
71 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
72 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
73 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
74 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
80 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
81 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
95 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
96 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
97 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
98 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
99 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
100 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
101 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
102 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
103 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
104 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
105 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
106 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
110 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
111 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
112 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
113 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
114 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
115 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
116 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
117 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
118 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
119 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
120 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
121 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
122 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
123 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
124 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
125 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
126 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
127 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
128 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
129 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
130 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
131 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
132 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
133 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
134 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
135 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
136 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
137 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
138 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
139 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
140 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
141 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
142 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
143 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
147 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
148 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
149 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
150 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
151 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
152 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
153 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
154 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
155 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
156 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
157 8002775197 Frankia nepalensis CN7 Isolate Nodule
158 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
159 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.83
Metatranscriptomes 0
Isolates 27.17

Biome Distribution

Category Percentage (%)
Aerial Root 0.54
Bulb 0
Endosphere 18.48
Nodule 0.54
Rhizoplane 7.07
Rhizosphere 41.3
Stem 0
Stem Tuber 0
Unclassified 32.07

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000075 3300002987 Bacteria 47795
2 JGI25160J50197_1000073 3300003354 Bacteria 104247
3 JGI25161J50226_1003297 3300003374 Bacteria 3744
4 Ga0055536_1000700 3300003781 Bacteria 22454
5 Ga0055531_10008024 3300003794 Bacteria 5644
6 Ga0055543_1000629 3300004625 Bacteria 18923
7 Ga0065165_1000198 3300005262 Bacteria 104285
8 Ga0070714_100095102 3300005435 Bacteria 2616
9 Ga0070685_10027448 3300005466 Bacteria 3146
10 Ga0070706_100045018 3300005467 Bacteria 4076
11 Ga0070665_100024235 3300005548 Bacteria 6110
12 Ga0068863_100000396 3300005841 Bacteria 44275
13 Ga0068858_100011731 3300005842 Bacteria 8264
14 Ga0068858_100028193 3300005842 Bacteria 5217
15 Ga0075365_10006730 3300006038 Bacteria 6357
16 Ga0075363_100000564 3300006048 Bacteria 12114
17 Ga0075363_100001950 3300006048 Bacteria 8184
18 Ga0075364_10002903 3300006051 Bacteria 9666
19 Ga0075364_10005037 3300006051 Bacteria 7661
20 Ga0075364_10005353 3300006051 Bacteria 7453
21 Ga0070715_10005150 3300006163 Bacteria 4343
22 Ga0070712_100006017 3300006175 Bacteria 7507
23 Ga0070712_100102323 3300006175 Bacteria 2121
24 Ga0075370_10008080 3300006353 Bacteria 5398
25 Ga0068865_100019901 3300006881 Bacteria 4348
26 Ga0105247_10000043 3300009101 Bacteria 157839
27 Ga0105243_10000624 3300009148 Bacteria 35279
28 Ga0105243_10027128 3300009148 Bacteria 4387
29 Ga0171463_1002 3300013249 Bacteria 1274851
30 Ga0157376_10032778 3300014969 Bacteria 4175
31 Ga0213876_10005956 3300021384 Bacteria 6661
32 Ga0213875_10001125 3300021388 Bacteria 18443
33 Ga0213875_10014361 3300021388 Bacteria 3864
34 Ga0209130_1000153 3300025284 Bacteria 104299
35 Ga0209676_1000666 3300025292 Bacteria 49043
36 Ga0209025_1000333 3300025294 Bacteria 104266
37 Ga0209564_1000280 3300025295 Bacteria 104429
38 Ga0209050_1000852 3300025298 Bacteria 41567
39 Ga0209256_1000064 3300025299 Bacteria 250853
40 Ga0209256_1001123 3300025299 Bacteria 30560
41 Ga0207426_1000280 3300025302 Bacteria 104299
42 Ga0209257_1002180 3300025304 Bacteria 20273
43 Ga0207655_1016635 3300025728 Bacteria 4011
44 Ga0207710_10000064 3300025900 Bacteria 162498
45 Ga0207688_10006359 3300025901 Bacteria 6433
46 Ga0207647_10043248 3300025904 Bacteria 2819
47 Ga0207705_10003025 3300025909 Bacteria 12817
48 Ga0207693_10113670 3300025915 Bacteria 2124
49 Ga0207709_10000373 3300025935 Bacteria 45160
50 Ga0207665_10009493 3300025939 Bacteria 6388
51 Ga0207712_10028078 3300025961 Bacteria 3762
52 Ga0207641_10001578 3300026088 Bacteria 22254
53 Ga0207648_10027835 3300026089 Bacteria 5015
54 Ga0207683_10045354 3300026121 Bacteria 3845
55 Ga0265338_10097281 3300028800 Bacteria 2412
56 Ga0307511_10000843 3300030521 Bacteria 32647
57 Ga0307512_10036312 3300030522 Bacteria 4182
58 Ga0265340_10001654 3300031247 Bacteria 12802
59 Ga0307406_10000057 3300031901 Bacteria 61661
60 Ga0307407_10029032 3300031903 Bacteria 2965
61 Ga0436364_0733475 3300037853 Bacteria 18458
62 Ga0436364_1319844 3300037853 Bacteria 8112
63 Ga0436365_1345306 3300039437 Bacteria 22437
64 Ga0436365_1628168 3300039437 Bacteria 17975
65 Ga0436365_1889369 3300039437 Bacteria 169293
66 Ga0466965_0006872 3300044683 Bacteria 5201
67 Ga0466966_0001665 3300044684 Bacteria 14331
68 Ga0466966_0005901 3300044684 Bacteria 8080
69 Ga0466966_0010807 3300044684 Bacteria 6066
70 Ga0466961_0023835 3300044693 Bacteria 3938
71 Ga0466963_0065828 3300044694 Bacteria 2430
72 Ga0466968_0001573 3300044735 Bacteria 8235
73 Ga0466970_0002220 3300044765 Bacteria 9375
74 Ga0466957_0012710 3300044842 Bacteria 4878
75 Ga0495592_0053179 3300046454 Bacteria 3004
76 Ga0495651_0001142 3300046462 Bacteria 20534
77 Ga0495653_0068073 3300046463 Bacteria 2671
78 Ga0495628_0060184 3300046516 Bacteria 2980
79 Ga0495652_0059913 3300046529 Bacteria 3219
80 Ga0495665_0017845 3300046531 Bacteria 3815
81 Ga0495587_0001995 3300046536 Bacteria 13605
82 Ga0495645_0055130 3300046543 Bacteria 2886
83 Ga0495668_0001641 3300046616 Bacteria 20856
84 Ga0495646_0039692 3300046680 Bacteria 2901
85 Ga0495604_0008614 3300047317 Bacteria 8063
86 Ga0495680_0015143 3300047322 Bacteria 6660
87 Ga0495673_0006080 3300047469 Bacteria 7168
88 Ga0495684_0002093 3300047471 Bacteria 16016
89 Ga0495602_0032307 3300048088 Bacteria 4929
90 Ga0496100_0000295 3300048903 Bacteria 24832
91 Ga0496101_0000024 3300048904 Bacteria 205570
92 Ga0496101_0000177 3300048904 Bacteria 51019
93 Ga0496102_0000001 3300048905 Bacteria 873433
94 Ga0496102_0046662 3300048905 Bacteria 3935
95 Ga0496103_0000003 3300048906 Bacteria 603967
96 Ga0496106_0001476 3300048909 Bacteria 17681
97 Ga0496108_0000788 3300048911 Bacteria 24747
98 Ga0496109_0005186 3300048912 Bacteria 10879
99 Ga0496112_0001680 3300048915 Bacteria 17227
100 Ga0496114_0002249 3300048917 Bacteria 14706
101 Ga0496115_0011094 3300048918 Bacteria 6752
102 Ga0496116_0000013 3300048919 Bacteria 603993
103 Ga0496116_0000165 3300048919 Bacteria 133688
104 Ga0496117_0000013 3300048920 Bacteria 603995
105 Ga0496117_0029528 3300048920 Bacteria 4225
106 Ga0496118_0000011 3300048921 Bacteria 603995
107 Ga0496118_0002891 3300048921 Bacteria 22356
108 Ga0496118_0058718 3300048921 Bacteria 2872
109 Ga0496119_0000215 3300048922 Bacteria 82231
110 Ga0496119_0000726 3300048922 Bacteria 44385
111 Ga0496119_0002802 3300048922 Bacteria 18691
112 Ga0496120_0000264 3300048923 Bacteria 87474
113 Ga0496120_0000802 3300048923 Bacteria 45201
114 Ga0496121_0010660 3300048924 Bacteria 10317
115 Ga0496123_0006945 3300048926 Bacteria 10812
116 Ga0496125_0045132 3300048928 Bacteria 3714
117 Ga0496126_0094506 3300048929 Bacteria 2623
118 Ga0501032_0038220 3300049569 Bacteria 3270
119 Ga0501036_0079898 3300049572 Bacteria 2765
120 Ga0501038_0006508 3300049574 Bacteria 10811
121 Ga0501047_0000084 3300049581 Bacteria 121007
122 nmdc:mga03n38_1840_c1 3300050490 Bacteria 6322
123 nmdc:mga03n38_4591_c1 3300050490 Bacteria 4596
124 nmdc:mga00v17_4403_c1 3300050491 Bacteria 7324
125 nmdc:mga0yw44_10389_c1 3300050492 Bacteria 4754
126 nmdc:mga06z11_850_c1 3300050494 Bacteria 11183
127 nmdc:mga07m45_328_c1 3300050496 Bacteria 19287
128 nmdc:mga0sz30_15127_c1 3300050516 Bacteria 3047
129 Ga0495601_0034662 3300053077 Bacteria 3149
130 Ga0495619_0059021 3300053085 Bacteria 2548
131 Ga0500616_0000268 3300053153 Bacteria 77866
132 Ga0500616_0000613 3300053153 Bacteria 43249
133 Ga0500616_0006425 3300053153 Bacteria 7698
134 Ga0500645_000007 3300053730 Bacteria 233700

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046543 Ga0495645_0055130 Ga0495645_0055130_27_1790 477
2 3300044842 Ga0466957_0012710 Ga0466957_0012710_14_1657 510
3 3300049574 Ga0501038_0006508 Ga0501038_0006508_7624_9765 544
4 3300009148 Ga0105243_10027128 Ga0105243_100271281 565
5 3300025728 Ga0207655_1016635 Ga0207655_10166352 565
6 3300049572 Ga0501036_0079898 Ga0501036_0079898_12_2219 575
7 3300005467 Ga0070706_100045018 Ga0070706_1000450182 579
8 3300046454 Ga0495592_0053179 Ga0495592_0053179_60_2141 582
9 3300046462 Ga0495651_0001142 Ga0495651_0001142_18437_20518 582
10 3300046516 Ga0495628_0060184 Ga0495628_0060184_30_2111 582
11 3300046529 Ga0495652_0059913 Ga0495652_0059913_16_2097 582
12 3300046536 Ga0495587_0001995 Ga0495587_0001995_11002_13083 582
13 3300046680 Ga0495646_0039692 Ga0495646_0039692_306_2387 582
14 3300047317 Ga0495604_0008614 Ga0495604_0008614_953_3034 582
15 3300047322 Ga0495680_0015143 Ga0495680_0015143_3181_5262 582
16 3300047471 Ga0495684_0002093 Ga0495684_0002093_8139_10220 582
17 3300048088 Ga0495602_0032307 Ga0495602_0032307_2566_4647 582
18 3300053077 Ga0495601_0034662 Ga0495601_0034662_891_2972 582
19 3300046463 Ga0495653_0068073 Ga0495653_0068073_309_2390 583
20 3300053085 Ga0495619_0059021 Ga0495619_0059021_376_2457 583
21 3300048919 Ga0496116_0000165 Ga0496116_0000165_35834_37972 590
22 3300048920 Ga0496117_0029528 Ga0496117_0029528_1155_3293 590
23 3300048921 Ga0496118_0002891 Ga0496118_0002891_11255_13393 590
24 3300048922 Ga0496119_0002802 Ga0496119_0002802_15681_17819 590
25 3300049569 Ga0501032_0038220 Ga0501032_0038220_101_2353 591
26 3300025909 Ga0207705_10003025 Ga0207705_100030257 597
27 3300028800 Ga0265338_10097281 Ga0265338_100972811 598
28 3300053153 Ga0500616_0000268 Ga0500616_0000268_60105_62078 604
29 3300031901 Ga0307406_10000057 Ga0307406_1000005754 608
30 3300025961 Ga0207712_10028078 Ga0207712_100280783 609
31 3300030521 Ga0307511_10000843 Ga0307511_1000084320 611
32 3300044684 Ga0466966_0010807 Ga0466966_0010807_3183_5138 611
33 3300044765 Ga0466970_0002220 Ga0466970_0002220_2533_4488 611
34 iso_pu_bacteria 2558860280 2559429200 611
35 3300044684 Ga0466966_0001665 Ga0466966_0001665_5359_7356 612
36 3300044693 Ga0466961_0023835 Ga0466961_0023835_1157_3154 612
37 3300006048 Ga0075363_100001950 Ga0075363_1000019502 613
38 3300006051 Ga0075364_10005353 Ga0075364_100053532 613
39 3300006175 Ga0070712_100102323 Ga0070712_1001023231 613
40 3300025915 Ga0207693_10113670 Ga0207693_101136701 613
41 3300050490 nmdc:mga03n38_4591_c1 nmdc:mga03n38_4591_c1_2474_4468 613
42 iso_pu_bacteria 2977251589 2977252981 613
43 3300013249 Ga0171463_1002 Ga0171463_10027 614
44 3300030522 Ga0307512_10036312 Ga0307512_100363122 614
45 3300039437 Ga0436365_1628168 Ga0436365_1628168_2738_4720 614
46 3300053730 Ga0500645_000007 Ga0500645_000007_134962_136938 614
47 iso_pu_bacteria 2773857759 2774382792 614
48 3300044684 Ga0466966_0005901 Ga0466966_0005901_456_2411 615
49 iso_pu_bacteria 8053945823 8053947568 617
50 3300048904 Ga0496101_0000024 Ga0496101_0000024_148076_150070 618
51 3300048905 Ga0496102_0000001 Ga0496102_0000001_731999_733993 618
52 3300048906 Ga0496103_0000003 Ga0496103_0000003_463061_465055 618
53 3300048919 Ga0496116_0000013 Ga0496116_0000013_138939_140933 618
54 3300048920 Ga0496117_0000013 Ga0496117_0000013_463061_465055 618
55 3300048921 Ga0496118_0000011 Ga0496118_0000011_138941_140935 618
56 3300048922 Ga0496119_0000726 Ga0496119_0000726_11810_13804 618
57 3300048923 Ga0496120_0000802 Ga0496120_0000802_42299_44293 618
58 3300048924 Ga0496121_0010660 Ga0496121_0010660_232_2226 618
59 iso_pu_bacteria 2738541274 2738705840 618
60 iso_pu_bacteria 2738543028 2739330329 618
61 iso_pu_bacteria 2902799365 2902800201 618
62 iso_pu_bacteria 2956939328 2956940521 618
63 iso_pu_bacteria 3001119090 3001121171 618
64 iso_pu_bacteria 2866552031 2866555787 619
65 iso_pu_bacteria 2784746768 2785372977 620
66 iso_pu_bacteria 2795385470 2795785885 620
67 iso_pu_bacteria 2811994872 2812323717 620
68 iso_pu_bacteria 2891326441 2891330127 620
69 3300021388 Ga0213875_10001125 Ga0213875_100011258 621
70 3300037853 Ga0436364_0733475 Ga0436364_0733475_10540_12522 621
71 3300005435 Ga0070714_100095102 Ga0070714_1000951022 622
72 3300044683 Ga0466965_0006872 Ga0466965_0006872_2337_4328 622
73 3300044735 Ga0466968_0001573 Ga0466968_0001573_812_2803 622
74 3300048926 Ga0496123_0006945 Ga0496123_0006945_6608_8626 622
75 3300048929 Ga0496126_0094506 Ga0496126_0094506_459_2435 622
76 iso_pu_bacteria 2738543011 2739236832 622
77 iso_pu_bacteria 2784132109 2784471351 622
78 iso_pu_bacteria 2889300758 2889305725 622
79 iso_pu_bacteria 2939743619 2939743860 622
80 iso_pu_bacteria 2974315732 2974320090 622
81 iso_pu_bacteria 2984523437 2984523972 622
82 3300021384 Ga0213876_10005956 Ga0213876_100059565 623
83 3300021388 Ga0213875_10014361 Ga0213875_100143613 623
84 3300037853 Ga0436364_1319844 Ga0436364_1319844_2516_4501 623
85 3300039437 Ga0436365_1345306 Ga0436365_1345306_18539_20530 623
86 3300039437 Ga0436365_1889369 Ga0436365_1889369_128568_130553 623
87 3300046616 Ga0495668_0001641 Ga0495668_0001641_15224_17263 623
88 3300048928 Ga0496125_0045132 Ga0496125_0045132_861_2900 623
89 iso_pu_bacteria 2565956761 2566993639 623
90 iso_pu_bacteria 2738541308 2738887482 623
91 iso_pu_bacteria 2904535858 2904541659 623
92 iso_pu_bacteria 2904765812 2904768279 623
93 iso_pu_bacteria 2904770941 2904775399 623
94 iso_pu_bacteria 2908811453 2908815588 623
95 iso_pu_bacteria 2922554459 2922559964 623
96 3300005466 Ga0070685_10027448 Ga0070685_100274482 624
97 3300005548 Ga0070665_100024235 Ga0070665_1000242352 624
98 3300005842 Ga0068858_100028193 Ga0068858_1000281934 624
99 3300006038 Ga0075365_10006730 Ga0075365_100067305 624
100 3300006048 Ga0075363_100000564 Ga0075363_1000005646 624
101 3300006051 Ga0075364_10002903 Ga0075364_100029036 624
102 3300006051 Ga0075364_10005037 Ga0075364_100050375 624
103 3300006163 Ga0070715_10005150 Ga0070715_100051502 624
104 3300006175 Ga0070712_100006017 Ga0070712_1000060177 624
105 3300006353 Ga0075370_10008080 Ga0075370_100080802 624
106 3300006881 Ga0068865_100019901 Ga0068865_1000199012 624
107 3300009148 Ga0105243_10000624 Ga0105243_1000062421 624
108 3300014969 Ga0157376_10032778 Ga0157376_100327782 624
109 3300025901 Ga0207688_10006359 Ga0207688_100063592 624
110 3300025904 Ga0207647_10043248 Ga0207647_100432482 624
111 3300025935 Ga0207709_10000373 Ga0207709_1000037329 624
112 3300025939 Ga0207665_10009493 Ga0207665_100094936 624
113 3300026089 Ga0207648_10027835 Ga0207648_100278352 624
114 3300026121 Ga0207683_10045354 Ga0207683_100453542 624
115 3300031903 Ga0307407_10029032 Ga0307407_100290322 624
116 3300044694 Ga0466963_0065828 Ga0466963_0065828_236_2248 624
117 3300046531 Ga0495665_0017845 Ga0495665_0017845_921_2930 624
118 3300047469 Ga0495673_0006080 Ga0495673_0006080_812_2842 624
119 3300048903 Ga0496100_0000295 Ga0496100_0000295_9304_11355 624
120 3300048904 Ga0496101_0000177 Ga0496101_0000177_41794_43845 624
121 3300048905 Ga0496102_0046662 Ga0496102_0046662_349_2355 624
122 3300048909 Ga0496106_0001476 Ga0496106_0001476_7262_9313 624
123 3300048911 Ga0496108_0000788 Ga0496108_0000788_9105_11135 624
124 3300048912 Ga0496109_0005186 Ga0496109_0005186_2315_4345 624
125 3300048915 Ga0496112_0001680 Ga0496112_0001680_14071_16101 624
126 3300048917 Ga0496114_0002249 Ga0496114_0002249_10144_12195 624
127 3300048918 Ga0496115_0011094 Ga0496115_0011094_3511_5562 624
128 3300049581 Ga0501047_0000084 Ga0501047_0000084_116093_118096 624
129 3300050490 nmdc:mga03n38_1840_c1 nmdc:mga03n38_1840_c1_1585_3582 624
130 3300050491 nmdc:mga00v17_4403_c1 nmdc:mga00v17_4403_c1_3512_5509 624
131 3300050492 nmdc:mga0yw44_10389_c1 nmdc:mga0yw44_10389_c1_1585_3582 624
132 3300050494 nmdc:mga06z11_850_c1 nmdc:mga06z11_850_c1_2954_4951 624
133 3300050496 nmdc:mga07m45_328_c1 nmdc:mga07m45_328_c1_10761_12758 624
134 3300050516 nmdc:mga0sz30_15127_c1 nmdc:mga0sz30_15127_c1_492_2468 624
135 iso_pu_bacteria 2551306166 2552110813 624
136 iso_pu_bacteria 2643221692 2644514018 624
137 iso_pu_bacteria 2863067949 2863070114 624
138 iso_pu_bacteria 2919713450 2919717069 624
139 iso_pu_bacteria 8056207758 8056211061 624
140 3300005841 Ga0068863_100000396 Ga0068863_1000003967 625
141 3300005842 Ga0068858_100011731 Ga0068858_1000117315 625
142 3300009101 Ga0105247_10000043 Ga0105247_1000004392 625
143 3300025900 Ga0207710_10000064 Ga0207710_10000064100 625
144 3300026088 Ga0207641_10001578 Ga0207641_1000157824 625
145 3300048921 Ga0496118_0058718 Ga0496118_0058718_664_2712 625
146 3300048922 Ga0496119_0000215 Ga0496119_0000215_49528_51630 625
147 3300048923 Ga0496120_0000264 Ga0496120_0000264_32878_34980 625
148 iso_pu_bacteria 2738543034 2739364179 625
149 iso_pu_bacteria 8002775197 8002781671 625
150 3300031247 Ga0265340_10001654 Ga0265340_1000165410 626
151 3300053153 Ga0500616_0000613 Ga0500616_0000613_1689_3791 626
152 3300053153 Ga0500616_0006425 Ga0500616_0006425_1414_3450 626
153 iso_pu_bacteria 2599185352 2600197253 627
154 iso_pu_bacteria 2643221557 2643804851 627
155 iso_pu_bacteria 2643221610 2644065695 627
156 iso_pu_bacteria 2643221668 2644376801 627
157 iso_pu_bacteria 2643221675 2644417587 627
158 iso_pu_bacteria 2643221680 2644453691 627
159 iso_pu_bacteria 2643221723 2644677767 627
160 iso_pu_bacteria 2643221726 2644688326 627
161 iso_pu_bacteria 2920822456 2920826791 627
162 iso_pu_bacteria 2643221618 2644104285 629
163 iso_pu_bacteria 2643221626 2644148898 629
164 iso_pu_bacteria 2643221655 2644313278 629
165 iso_pu_bacteria 2643221659 2644334147 629
166 iso_pu_bacteria 2643221698 2644547201 629
167 iso_pu_bacteria 2643221712 2644612903 629
168 iso_pu_bacteria 2941499720 2941504321 629
169 3300002987 JGI25159J45721_1000075 JGI25159J45721_100007541 631
170 3300003354 JGI25160J50197_1000073 JGI25160J50197_10000737 631
171 3300003374 JGI25161J50226_1003297 JGI25161J50226_10032973 631
172 3300003781 Ga0055536_1000700 Ga0055536_10007009 631
173 3300003794 Ga0055531_10008024 Ga0055531_100080243 631
174 3300004625 Ga0055543_1000629 Ga0055543_100062917 631
175 3300005262 Ga0065165_1000198 Ga0065165_10001987 631
176 3300025284 Ga0209130_1000153 Ga0209130_10001537 631
177 3300025292 Ga0209676_1000666 Ga0209676_100066620 631
178 3300025294 Ga0209025_1000333 Ga0209025_10003337 631
179 3300025295 Ga0209564_1000280 Ga0209564_10002807 631
180 3300025298 Ga0209050_1000852 Ga0209050_100085233 631
181 3300025299 Ga0209256_1000064 Ga0209256_10000647 631
182 3300025299 Ga0209256_1001123 Ga0209256_10011237 631
183 3300025302 Ga0207426_1000280 Ga0207426_10002807 631
184 3300025304 Ga0209257_1002180 Ga0209257_10021807 631

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02785

Biotin_carb_C

Biotin carboxylase C-terminal domain

343

450

0.99

PF00289

Biotin_carb_N

Biotin carboxylase, N-terminal domain

6

115

0.98

PF02786

CPSase_L_D2

Carbamoyl-phosphate synthase L chain, ATP binding domain

120

331

0.98

PF00364

Biotin_lipoyl

Biotin-requiring enzyme

609

675

0.95

PF07478

Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

128

300

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9748 1 448
3g8d-assembly1.cif.gz_A crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli 0.9697 1 448
2j9g-assembly1.cif.gz_A crystal structure of biotin carboxylase from e. coli in complex with amppnp and adp 0.9687 1 449
5mlk-assembly1.cif.gz_B biotin dependent carboxylase acca3 dimer from mycobacterium tuberculosis (rv3285) 0.9682 2 441
4mv7-assembly1.cif.gz_A crystal structure of biotin carboxylase form haemophilus influenzae in complex with phosphonoformate 0.966 1 448
ID Description Score Start End Superfamily
af_A0A2R8PV58_38_157_3.40.50.20 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9873 13 131 3.40.50.20
af_P9WPQ3_1_451_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9831 1 451 3.30.470.20
af_Q54KE6_162_230_3.30.1490.20 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;ATP-grasp fold, A domain 0.981 134 202 3.30.1490.20
af_P9WPQ3_1_451_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9766 1 451 3.30.470.20
2vqdA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9744 1 84 3.40.50.20
ID Description Score Start End GO Terms
AF-A0A7J9W0A8-F1-model_v4 biotin carboxylase (EC 6.3.4.14) 1.006 1 71 GO:0005524
GO:0016874
AF-A0A519SWJ0-F1-model_v4 Acetyl-CoA carboxylase biotin carboxylase subunit (EC 6.4.1.2) 1.001 1 72 GO:0003989
GO:0004658
GO:0005524
AF-A0A659YRP8-F1-model_v4 deleted 1 1 66
AF-A0A323V7T1-F1-model_v4 biotin carboxylase (EC 6.3.4.14) 1 2 78 GO:0005524
GO:0016874
AF-A0A3M1P1Z5-F1-model_v4 Acetyl-CoA carboxylase biotin carboxylase subunit (EC 6.4.1.2) 0.9998 3 74 GO:0003989
GO:0005524

Feature Viewer

pLDDT pTM Quality
85.36 0.84 High
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Predicted Structure (AlphaFold2)

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