F283476

General Info

Members Datasets Scaffolds Average Seq Length
184 107 362 445

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2904424332|2904430470
Length 517
Sequence INSNISSLNSQRNLTTSQASLSTSLQRLSSGLRINSAKDDAAGLAISERFTSQIRGNQQAARNANDGISLAQTAEGGLSTAGDLLQRVRELAVQSANGTNSDSDRKSIQNEVSALSQELDRVANTTQFNGQNVLDGSLTAAQFQVGANANQTINVGVQSAKATDLGNNTTSSANATGSISQARTAGTQTEDITTTPPTYPQNGVAAQKLTISSRAGTQTDVTVKAGDSAKAIAASVNGLSGKSGVTATAATQATLSGIVDGAVEFTLRGANSIPNNVNSQPVTISAKVVGGDLSSLAQAVNAQTGTTGITASIKLTATGTKELQLNNSTGDDIQIKSTTASTGLTGATLRGADLTPAVGNTPAVPDPGIALAQNSVTLVGGHVDYSSDAGFSIASDDGANTLMASGSEGSSLQSIAKLDVSTVEGSNKALKTIDAALNQINSNRADLGAIQNRFKSTIDNLNTTTENLSASRSRIQDTDFAAETANLTRGQILQQAGTAMLAQANSLPNGVLSLLRG

Samples

Sample ID Description Type Environment
1 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
2 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
3 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
4 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
8 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
9 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
10 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
11 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
12 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
13 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
14 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
15 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
16 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
17 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
18 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
19 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
20 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
21 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
22 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
23 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
24 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
25 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
26 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
27 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
28 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
29 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
30 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
31 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
32 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
33 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
34 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
35 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
36 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
37 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
38 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
39 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
40 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
41 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
42 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
43 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
44 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
45 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
46 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
47 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
48 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
49 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
50 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
51 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
52 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
53 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
54 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
55 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
56 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
57 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
58 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
59 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
60 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
61 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
62 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
63 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
64 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
65 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
66 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
67 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
68 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
69 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
70 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
71 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
72 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
73 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
74 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
75 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300049128 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
77 3300049130 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
78 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
80 3300049545 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_B_4_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
81 3300049553 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_A_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
85 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
86 3300059627 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 154R_AW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
87 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
88 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
89 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
90 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
91 3300059649 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 68R_SW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
92 3300060344 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
93 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
95 2904424332 Duganella sp. 1411 Isolate Rhizosphere
96 2600255292 Janthinobacterium lividum NFR18 Isolate Rhizoplane
97 2643221645 Massilia sp. Root351 Isolate Unclassified
98 2643221664 Massilia sp. Root418 Isolate Unclassified
99 2738541280 Massilia sp. GV090 Isolate Unclassified
100 2738541300 Massilia sp. GV016 Isolate Unclassified
101 2738543018 Massilia sp. GV045 Isolate Unclassified
102 2738543030 Massilia sp. GV097 Isolate Unclassified
103 2857558681 Duganella sp. R-74565 Isolate Unclassified
104 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere
105 2932410948 Janthinobacterium lividum 2829 Isolate Rhizosphere
106 2932416698 Janthinobacterium lividum 2830 Isolate Rhizosphere
107 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.7
Metatranscriptomes 9.24
Isolates 7.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.43
Nodule 0
Rhizoplane 1.09
Rhizosphere 85.87
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1003476 3300002738 Bacteria 3284
2 JGI25159J45721_1002565 3300002987 Bacteria 6817
3 Ga0055526_1002381 3300003771 Bacteria 12740
4 Ga0055543_1011044 3300004625 Bacteria 1866
5 Ga0065165_1000094 3300005262 Bacteria 146099
6 Ga0065165_1018433 3300005262 Bacteria 2526
7 Ga0070682_100045231 3300005337 Bacteria 2728
8 Ga0105244_10010602 3300009036 Bacteria 5575
9 Ga0182006_1000075 3300015261 Bacteria 130239
10 Ga0207425_1001176 3300025245 Bacteria 11658
11 Ga0209646_1000028 3300025246 Bacteria 387986
12 Ga0209130_1000455 3300025284 Bacteria 43009
13 Ga0209025_1004272 3300025294 Bacteria 12550
14 Ga0209564_1000045 3300025295 Bacteria 376549
15 Ga0209758_1000149 3300025297 Bacteria 163504
16 Ga0207655_1007224 3300025728 Bacteria 7239
17 Ga0265316_10047806 3300031344 Bacteria 3382
18 Ga0395899_0133665 3300037312 Bacteria 1770
19 Ga0395900_0215725 3300037418 Bacteria 1936
20 Ga0395905_0006251 3300037471 Bacteria 12025
21 Ga0395905_0044275 3300037471 Bacteria 4177
22 Ga0395901_0333229 3300038443 Bacteria 1568
23 Ga0466969_0005987 3300044656 Bacteria 6473
24 Ga0466965_0025807 3300044683 Bacteria 2846
25 Ga0466966_0001482 3300044684 Bacteria 15080
26 Ga0466966_0107979 3300044684 Bacteria 1717
27 Ga0466957_0001847 3300044842 Bacteria 11178
28 Ga0466957_0010217 3300044842 Bacteria 5376
29 Ga0466959_0002111 3300045049 Bacteria 12573
30 Ga0466959_0015440 3300045049 Bacteria 5563
31 Ga0495617_001046 3300046452 Bacteria 12653
32 Ga0495627_000005 3300046453 Bacteria 630805
33 Ga0495603_0014339 3300046455 Bacteria 4792
34 Ga0495590_0000003 3300046457 Bacteria 478593
35 Ga0495590_0010107 3300046457 Bacteria 3562
36 Ga0495629_0026539 3300046459 Bacteria 4114
37 Ga0495638_0000118 3300046460 Bacteria 127657
38 Ga0495650_0000258 3300046471 Bacteria 102564
39 Ga0495650_0003130 3300046471 Bacteria 12388
40 Ga0495650_0030309 3300046471 Bacteria 2452
41 Ga0495605_0004971 3300046474 Bacteria 7767
42 Ga0495605_0027047 3300046474 Bacteria 2975
43 Ga0495605_0052084 3300046474 Bacteria 1990
44 Ga0495584_0000342 3300046491 Bacteria 32246
45 Ga0495584_0005557 3300046491 Bacteria 6672
46 Ga0495584_0019579 3300046491 Bacteria 3438
47 Ga0495585_0000602 3300046492 Bacteria 33597
48 Ga0495585_0006227 3300046492 Bacteria 7434
49 Ga0495585_0030278 3300046492 Bacteria 3078
50 Ga0495596_0000987 3300046500 Bacteria 16902
51 Ga0495596_0003891 3300046500 Bacteria 7402
52 Ga0495596_0039410 3300046500 Bacteria 1866
53 Ga0495596_0045043 3300046500 Bacteria 1735
54 Ga0495607_0001072 3300046501 Bacteria 24976
55 Ga0495607_0005679 3300046501 Bacteria 8887
56 Ga0495607_0007180 3300046501 Bacteria 7738
57 Ga0495583_0000079 3300046506 Bacteria 169681
58 Ga0495583_0000466 3300046506 Bacteria 59826
59 Ga0495606_0003057 3300046507 Bacteria 18243
60 Ga0495606_0003570 3300046507 Bacteria 16401
61 Ga0495606_0009861 3300046507 Bacteria 8010
62 Ga0495606_0109265 3300046507 Bacteria 1670
63 Ga0495616_0012199 3300046513 Bacteria 4888
64 Ga0495616_0023107 3300046513 Bacteria 3349
65 Ga0495616_0023756 3300046513 Bacteria 3294
66 Ga0495631_0049734 3300046518 Bacteria 1834
67 Ga0495632_0000499 3300046519 Bacteria 36966
68 Ga0495632_0003014 3300046519 Bacteria 12289
69 Ga0495637_0006008 3300046520 Bacteria 6134
70 Ga0495643_0000505 3300046522 Bacteria 48848
71 Ga0495643_0000641 3300046522 Bacteria 41474
72 Ga0495643_0002740 3300046522 Bacteria 13553
73 Ga0495644_0000736 3300046523 Bacteria 13533
74 Ga0495648_0000070 3300046524 Bacteria 136680
75 Ga0495648_0001870 3300046524 Bacteria 20129
76 Ga0495648_0003812 3300046524 Bacteria 13095
77 Ga0495648_0017565 3300046524 Bacteria 5109
78 Ga0495648_0020365 3300046524 Bacteria 4627
79 Ga0495642_0000733 3300046528 Bacteria 16294
80 Ga0495642_0011313 3300046528 Bacteria 3426
81 Ga0495642_0012721 3300046528 Bacteria 3248
82 Ga0495609_0000002 3300046538 Bacteria 739816
83 Ga0495609_0000587 3300046538 Bacteria 28562
84 Ga0495597_0000031 3300046542 Bacteria 133296
85 Ga0495597_0000206 3300046542 Bacteria 53783
86 Ga0495597_0002683 3300046542 Bacteria 11002
87 Ga0495597_0037944 3300046542 Bacteria 2161
88 Ga0495622_0000004 3300046557 Bacteria 258984
89 Ga0495622_0000256 3300046557 Bacteria 40845
90 Ga0495622_0030194 3300046557 Bacteria 2532
91 Ga0495633_0001442 3300046558 Bacteria 18481
92 Ga0495633_0002584 3300046558 Bacteria 12672
93 Ga0495633_0006621 3300046558 Bacteria 6836
94 Ga0495633_0007913 3300046558 Bacteria 6062
95 Ga0495668_0000168 3300046616 Bacteria 97230
96 Ga0495668_0000683 3300046616 Bacteria 40836
97 Ga0495668_0018086 3300046616 Bacteria 4078
98 Ga0495611_0002890 3300046648 Bacteria 7670
99 Ga0495625_0005449 3300046660 Bacteria 11603
100 Ga0495625_0006487 3300046660 Bacteria 10399
101 Ga0495625_0007109 3300046660 Bacteria 9831
102 Ga0495625_0008241 3300046660 Bacteria 8914
103 Ga0495661_0001011 3300046665 Bacteria 25188
104 Ga0495661_0005298 3300046665 Bacteria 9169
105 Ga0495661_0010183 3300046665 Bacteria 6426
106 Ga0495661_0029356 3300046665 Bacteria 3510
107 Ga0495588_0000067 3300046674 Bacteria 238958
108 Ga0495669_0015286 3300046684 Bacteria 3286
109 Ga0495670_0003952 3300046691 Bacteria 7279
110 Ga0495649_0012568 3300046694 Bacteria 4917
111 Ga0495589_0000009 3300046794 Bacteria 256265
112 Ga0495589_0002355 3300046794 Bacteria 10602
113 Ga0495589_0003082 3300046794 Bacteria 9136
114 Ga0495660_0000777 3300046810 Bacteria 23916
115 Ga0495660_0000981 3300046810 Bacteria 20849
116 Ga0495660_0001658 3300046810 Bacteria 14919
117 Ga0495660_0001897 3300046810 Bacteria 13688
118 Ga0495660_0003511 3300046810 Bacteria 9675
119 Ga0495660_0021554 3300046810 Bacteria 3690
120 Ga0495660_0054982 3300046810 Bacteria 2156
121 Ga0495660_0058394 3300046810 Bacteria 2078
122 Ga0495581_0009334 3300047315 Bacteria 5677
123 Ga0495672_0000580 3300047320 Bacteria 41398
124 Ga0495672_0002049 3300047320 Bacteria 18937
125 Ga0495672_0076924 3300047320 Bacteria 1872
126 Ga0495683_0002540 3300047323 Bacteria 10964
127 Ga0495683_0003251 3300047323 Bacteria 9498
128 Ga0495687_000013 3300047443 Bacteria 371058
129 Ga0495687_000064 3300047443 Bacteria 163468
130 Ga0495687_000162 3300047443 Bacteria 100599
131 Ga0495687_001054 3300047443 Bacteria 27272
132 Ga0495677_0000142 3300047445 Bacteria 34317
133 Ga0495681_0005977 3300047470 Bacteria 8070
134 Ga0495681_0022891 3300047470 Bacteria 3332
135 Ga0495614_0007832 3300048089 Bacteria 4750
136 Ga0495626_0002221 3300048091 Bacteria 13917
137 Ga0495626_0004362 3300048091 Bacteria 8714
138 Ga0496103_0004535 3300048906 Bacteria 8410
139 Ga0496121_0077091 3300048924 Bacteria 2655
140 Ga0496122_0001150 3300048925 Bacteria 45372
141 Ga0496123_0003204 3300048926 Bacteria 18664
142 Ga0496124_0005620 3300048927 Bacteria 14025
143 Ga0501306_004394 3300049127 Bacteria 1576
144 Ga0501308_001250 3300049128 Bacteria 1980
145 Ga0501308_002663 3300049128 Bacteria 1586
146 Ga0501310_002132 3300049130 Bacteria 1859
147 Ga0501305_003855 3300049161 Bacteria 1729
148 Ga0495678_000016 3300049459 Bacteria 303426
149 Ga0495678_001126 3300049459 Bacteria 22215
150 Ga0495678_001780 3300049459 Bacteria 15921
151 Ga0495678_003398 3300049459 Bacteria 9897
152 Ga0495678_013671 3300049459 Bacteria 3800
153 Ga0495678_017739 3300049459 Bacteria 3216
154 Ga0501329_00140 3300049545 Bacteria 1948
155 Ga0501337_000942 3300049553 Bacteria 1578
156 Ga0501269_000896 3300049766 Bacteria 4395
157 Ga0501035_0002078 3300049822 Bacteria 19930
158 Ga0587084_003147 3300059477 Bacteria 1788
159 Ga0587092_003426 3300059512 Bacteria 1801
160 Ga0587117_002179 3300059627 Bacteria 1790
161 Ga0587062_002171 3300059639 Bacteria 1830
162 Ga0587067_002650 3300059640 Bacteria 2148
163 Ga0587068_005135 3300059641 Bacteria 1769
164 Ga0587079_004906 3300059647 Bacteria 1855
165 Ga0587102_001075 3300059649 Bacteria 1809
166 Ga0587071_007133 3300060344 Bacteria 1771
167 Ga0587111_0006999 3300060346 Bacteria 1814
168 Ga0466962_0047052 3300061719 Bacteria 2061
169 2904430470 2904424332 Bacteria 7633521
170 2601670860 2600255292 Bacteria 6300551
171 2644253968 2643221645 Bacteria 7207331
172 2644356739 2643221664 Bacteria 7272945
173 2738742072 2738541280 Bacteria 6630198
174 2738844525 2738541300 Bacteria 6675882
175 2739276035 2738543018 Bacteria 6718814
176 2739345441 2738543030 Bacteria 6719714
177 2857563902 2857558681 Bacteria 6617694
178 2885082241 2885080285 Bacteria 6355622
179 2932412244 2932410948 Bacteria 6312192
180 2932419759 2932416698 Bacteria 6315112
181 8001523356 8001522603 Bacteria 4726425
182 JGI25154J39366_1003476
183 JGI25159J45721_1002565
184 Ga0055526_1002381
185 Ga0055543_1011044
186 Ga0065165_1000094
187 Ga0065165_1018433
188 Ga0070682_100045231
189 Ga0105244_10010602
190 Ga0182006_1000075
191 Ga0207425_1001176
192 Ga0209646_1000028
193 Ga0209130_1000455
194 Ga0209025_1004272
195 Ga0209564_1000045
196 Ga0209758_1000149
197 Ga0207655_1007224
198 Ga0265316_10047806
199 Ga0395899_0133665
200 Ga0395900_0215725
201 Ga0395905_0006251
202 Ga0395905_0044275
203 Ga0395901_0333229
204 Ga0466969_0005987
205 Ga0466965_0025807
206 Ga0466966_0001482
207 Ga0466966_0107979
208 Ga0466957_0001847
209 Ga0466957_0010217
210 Ga0466959_0002111
211 Ga0466959_0015440
212 Ga0495617_001046
213 Ga0495627_000005
214 Ga0495603_0014339
215 Ga0495590_0000003
216 Ga0495590_0010107
217 Ga0495629_0026539
218 Ga0495638_0000118
219 Ga0495650_0000258
220 Ga0495650_0003130
221 Ga0495650_0030309
222 Ga0495605_0004971
223 Ga0495605_0027047
224 Ga0495605_0052084
225 Ga0495584_0000342
226 Ga0495584_0005557
227 Ga0495584_0019579
228 Ga0495585_0000602
229 Ga0495585_0006227
230 Ga0495585_0030278
231 Ga0495596_0000987
232 Ga0495596_0003891
233 Ga0495596_0039410
234 Ga0495596_0045043
235 Ga0495607_0001072
236 Ga0495607_0005679
237 Ga0495607_0007180
238 Ga0495583_0000079
239 Ga0495583_0000466
240 Ga0495606_0003057
241 Ga0495606_0003570
242 Ga0495606_0009861
243 Ga0495606_0109265
244 Ga0495616_0012199
245 Ga0495616_0023107
246 Ga0495616_0023756
247 Ga0495631_0049734
248 Ga0495632_0000499
249 Ga0495632_0003014
250 Ga0495637_0006008
251 Ga0495643_0000505
252 Ga0495643_0000641
253 Ga0495643_0002740
254 Ga0495644_0000736
255 Ga0495648_0000070
256 Ga0495648_0001870
257 Ga0495648_0003812
258 Ga0495648_0017565
259 Ga0495648_0020365
260 Ga0495642_0000733
261 Ga0495642_0011313
262 Ga0495642_0012721
263 Ga0495609_0000002
264 Ga0495609_0000587
265 Ga0495597_0000031
266 Ga0495597_0000206
267 Ga0495597_0002683
268 Ga0495597_0037944
269 Ga0495622_0000004
270 Ga0495622_0000256
271 Ga0495622_0030194
272 Ga0495633_0001442
273 Ga0495633_0002584
274 Ga0495633_0006621
275 Ga0495633_0007913
276 Ga0495668_0000168
277 Ga0495668_0000683
278 Ga0495668_0018086
279 Ga0495611_0002890
280 Ga0495625_0005449
281 Ga0495625_0006487
282 Ga0495625_0007109
283 Ga0495625_0008241
284 Ga0495661_0001011
285 Ga0495661_0005298
286 Ga0495661_0010183
287 Ga0495661_0029356
288 Ga0495588_0000067
289 Ga0495669_0015286
290 Ga0495670_0003952
291 Ga0495649_0012568
292 Ga0495589_0000009
293 Ga0495589_0002355
294 Ga0495589_0003082
295 Ga0495660_0000777
296 Ga0495660_0000981
297 Ga0495660_0001658
298 Ga0495660_0001897
299 Ga0495660_0003511
300 Ga0495660_0021554
301 Ga0495660_0054982
302 Ga0495660_0058394
303 Ga0495581_0009334
304 Ga0495672_0000580
305 Ga0495672_0002049
306 Ga0495672_0076924
307 Ga0495683_0002540
308 Ga0495683_0003251
309 Ga0495687_000013
310 Ga0495687_000064
311 Ga0495687_000162
312 Ga0495687_001054
313 Ga0495677_0000142
314 Ga0495681_0005977
315 Ga0495681_0022891
316 Ga0495614_0007832
317 Ga0495626_0002221
318 Ga0495626_0004362
319 Ga0496103_0004535
320 Ga0496121_0077091
321 Ga0496122_0001150
322 Ga0496123_0003204
323 Ga0496124_0005620
324 Ga0501306_004394
325 Ga0501308_001250
326 Ga0501308_002663
327 Ga0501310_002132
328 Ga0501305_003855
329 Ga0495678_000016
330 Ga0495678_001126
331 Ga0495678_001780
332 Ga0495678_003398
333 Ga0495678_013671
334 Ga0495678_017739
335 Ga0501329_00140
336 Ga0501337_000942
337 Ga0501269_000896
338 Ga0501035_0002078
339 Ga0587084_003147
340 Ga0587092_003426
341 Ga0587117_002179
342 Ga0587062_002171
343 Ga0587067_002650
344 Ga0587068_005135
345 Ga0587079_004906
346 Ga0587102_001075
347 Ga0587071_007133
348 Ga0587111_0006999
349 Ga0466962_0047052
350 2904430470
351 2601670860
352 2644253968
353 2644356739
354 2738742072
355 2738844525
356 2739276035
357 2739345441
358 2857563902
359 2885082241
360 2932412244
361 2932419759
362 8001523356

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00669

Flagellin_N

Bacterial flagellin N-terminal helical region

1

139

0.99

PF00700

Flagellin_C

Bacterial flagellin C-terminal helical region

430

515

0.99

PF07196

Flagellin_IN

Flagellin hook IN motif

208

259

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
5gy2-assembly2.cif.gz_D crystal structure of a complex between bacillus subtilis flagellin and zebrafish toll-like receptor 5 0.9639 38 148
5z7q-assembly1.cif.gz_A crystal structure of bacillus cereus flagellin 0.8908 46 144
6pwb-assembly1.cif.gz_AG rigid body fitting of flagellin flab, and flagellar coiling proteins, fcpa and fcpb, into a 10 angstrom structure of the asymmetric flagellar filament purified from leptospira biflexa patoc wt cells resolved via subtomogram averaging 0.8107 22 429
5ziy-assembly3.cif.gz_A crystal structure of bacillus cereus flgl 0.7934 26 122
2d4x-assembly1.cif.gz_A crystal structure of a 26k fragment of hap3 (flgl) 0.7929 42 150
ID Description Score Start End Superfamily
4nx9A01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9767 41 386 1.20.1330.10
5gy2D00 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9639 38 148 1.20.1330.10
4nx9A01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.958 41 386 1.20.1330.10
3v47D01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.9579 44 143 1.20.1330.10
4cfiA01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.934 52 151 1.20.1330.10
ID Description Score Start End GO Terms
AF-A0A354ZJS0-F1-model_v4 Flagellin 0.9866 38 147 GO:0005198
GO:0009288
AF-A0A3A0DUD9-F1-model_v4 Flagellin 0.9601 23 151 GO:0005198
GO:0005576
GO:0009288
AF-A0A4P5VYP6-F1-model_v4 Flagellin N-terminal domain-containing protein 0.9586 42 148 GO:0005198
AF-A0A2N5RHX0-F1-model_v4 Flagellin 0.9556 27 143 GO:0005198
GO:0009288
AF-A0A845JU17-F1-model_v4 Flagellin N-terminal domain-containing protein 0.9544 35 139 GO:0005198

Map