F283591

General Info

Members Datasets Scaffolds Average Seq Length
185 107 371 459

Family's Representative Sequence

Representative Sequence 3300002737|JGI25162J39368_1002054|JGI25162J39368_10020548
Length 483
Sequence MQISIRSALKMLDTASQLPILYLYSTMSESIFPENFLESLAVEPGFDRQNFIEAHQNGAALTSIRINPFKKTIIKTDEQVPWCAEGFYLDTRPSFTFDPLFHAGAYYVQEASSMFMGHILNHIKENNDEQLAVLDLCAAPGGKSTLINSGIGNGDLLVSNEIIKTRVPILCDNLNRWGTANTIVSNNDPRDFGRLPGFFDIILVDAPCSGSGMFRKDAAAMNEWSAANVNLCHQRQERIMADVYPALKQDGYLIYSTCSYSHQENEDILDWLCAEFDLESIRIPIYKEWGIVETESYRFYPGKVKGEGLFAACLRKRDSSGQLPSFKAKGNQKLPMKEIDMVKGYLNAADDFYFFKVNDEWLAIDHQHKDSLDILQRNLYIKKSGVRIGKLMGSDLVPDHELALSIYINKEKVLQTELSYEQAIQYLRRENIDINSTQKGWSLMEFEGQALGWAKLLPNRVNNYFPKELRILASPPAPEGRNQ

Samples

Sample ID Description Type Environment
1 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
11 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
24 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
26 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
43 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
44 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
45 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
46 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
68 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
74 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
75 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
76 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
77 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
78 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
79 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
80 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
81 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
82 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
83 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
88 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
89 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
90 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
93 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
94 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
95 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
96 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
97 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
98 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
99 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
100 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
101 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
102 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
103 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
104 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
105 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
106 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
107 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.68
Metatranscriptomes 0
Isolates 4.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.27
Nodule 0
Rhizoplane 0.54
Rhizosphere 80.54
Stem 0
Stem Tuber 0
Unclassified 1.62

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1002054 3300002737 Bacteria 8776
2 JGI24736J21556_1004271 3300001904 Bacteria 2449
3 JGI24737J22298_10000681 3300001990 Bacteria 11981
4 JGI24735J21928_10000005 3300002067 Bacteria 356755
5 JGI25162J39368_1000682 3300002737 Bacteria 23752
6 JGI25164J39214_1000613 3300002772 Bacteria 15237
7 JGI25165J46597_1001008 3300003214 Bacteria 18669
8 rootH1_10080216 3300003316 Bacteria 3251
9 rootH1_10080216 3300003323 Unclassified 2003
10 rootH1_10100651 3300003316 Bacteria 5519
11 rootH2_10018482 3300003320 Bacteria 7697
12 rootH2_10047243 3300003320 Bacteria 9430
13 rootH2_10227711 3300003320 Bacteria 2468
14 rootH2_10233854 3300003320 Bacteria 2530
15 rootH1_10007213 3300003323 Bacteria 37505
16 rootH1_10330766 3300003323 Bacteria 2153
17 Ga0065714_10085087 3300005288 Bacteria 2152
18 Ga0070676_10007187 3300005328 Bacteria 5966
19 Ga0068868_100125764 3300005338 Bacteria 2094
20 Ga0070673_100008632 3300005364 Bacteria 6788
21 Ga0070678_100017640 3300005456 Bacteria 4604
22 Ga0070662_100002313 3300005457 Bacteria 11700
23 Ga0068867_100008159 3300005459 Bacteria 7397
24 Ga0070679_100027955 3300005530 Bacteria 5557
25 Ga0068853_100018436 3300005539 Bacteria 5776
26 Ga0070665_100000061 3300005548 Bacteria 222138
27 Ga0068855_100000831 3300005563 Bacteria 38169
28 Ga0068855_100014344 3300005563 Bacteria 9541
29 Ga0068855_100077275 3300005563 Bacteria 3862
30 Ga0068855_100175168 3300005563 Bacteria 2428
31 Ga0068855_100183879 3300005563 Bacteria 2362
32 Ga0068855_100363106 3300005563 Bacteria 1593
33 Ga0068856_100000006 3300005614 Bacteria 223827
34 Ga0068856_100143330 3300005614 Bacteria 2397
35 Ga0068852_100013694 3300005616 Bacteria 6214
36 Ga0075366_10004089 3300006195 Bacteria 7802
37 Ga0075366_10032509 3300006195 Bacteria 3071
38 Ga0097621_100003881 3300006237 Bacteria 10358
39 Ga0068871_100000622 3300006358 Bacteria 24425
40 Ga0068865_100007507 3300006881 Bacteria 6707
41 Ga0105240_10000075 3300009093 Bacteria 199596
42 Ga0105240_10108866 3300009093 Bacteria 3356
43 Ga0105240_10146673 3300009093 Bacteria 2815
44 Ga0105241_10004575 3300009174 Bacteria 10235
45 Ga0105241_10009106 3300009174 Bacteria 7305
46 Ga0105241_10235921 3300009174 Bacteria 1544
47 Ga0105242_10014527 3300009176 Bacteria 6101
48 Ga0105237_10000465 3300009545 Bacteria 57393
49 Ga0105237_10021544 3300009545 Bacteria 6626
50 Ga0105237_10023198 3300009545 Bacteria 6361
51 Ga0105237_10024810 3300009545 Bacteria 6135
52 Ga0105237_10059947 3300009545 Bacteria 3807
53 Ga0105238_10030758 3300009551 Bacteria 5465
54 Ga0105238_10084640 3300009551 Bacteria 3161
55 Ga0105239_10000026 3300010375 Bacteria 248302
56 Ga0105239_10000286 3300010375 Bacteria 74525
57 Ga0105239_10000886 3300010375 Bacteria 42475
58 Ga0105239_10002242 3300010375 Bacteria 24707
59 Ga0105239_10061479 3300010375 Bacteria 4122
60 Ga0105239_10240118 3300010375 Bacteria 2034
61 Ga0157373_10004111 3300013100 Bacteria 10972
62 Ga0157371_10000455 3300013102 Bacteria 50218
63 Ga0157371_10050979 3300013102 Bacteria 2941
64 Ga0157370_10062093 3300013104 Bacteria 3544
65 Ga0157370_10062380 3300013104 Bacteria 3535
66 Ga0157369_10098521 3300013105 Bacteria 3117
67 Ga0157374_10000125 3300013296 Bacteria 70183
68 Ga0157374_10057423 3300013296 Bacteria 3635
69 Ga0157378_10038747 3300013297 Bacteria 4225
70 Ga0163162_10000087 3300013306 Bacteria 85680
71 Ga0163162_10045336 3300013306 Bacteria 4405
72 Ga0163162_10049864 3300013306 Bacteria 4197
73 Ga0157372_10103242 3300013307 Bacteria 3257
74 Ga0157372_10296212 3300013307 Bacteria 1881
75 Ga0157375_10036705 3300013308 Bacteria 4690
76 Ga0207427_100564 3300025231 Bacteria 18732
77 Ga0209437_100230 3300025233 Bacteria 95882
78 Ga0209437_100526 3300025233 Bacteria 26615
79 Ga0209026_1001703 3300025250 Bacteria 9175
80 Ga0209026_1005441 3300025250 Bacteria 3429
81 Ga0209233_1000457 3300025261 Bacteria 26631
82 Ga0209233_1000960 3300025261 Bacteria 12457
83 Ga0209455_1002664 3300025272 Bacteria 6725
84 Ga0207647_10001219 3300025904 Bacteria 19782
85 Ga0207647_10006276 3300025904 Bacteria 8656
86 Ga0207647_10055622 3300025904 Bacteria 2431
87 Ga0207645_10013463 3300025907 Bacteria 5510
88 Ga0207705_10000317 3300025909 Bacteria 43987
89 Ga0207705_10077694 3300025909 Bacteria 2415
90 Ga0207654_10020832 3300025911 Bacteria 3482
91 Ga0207695_10000235 3300025913 Bacteria 146984
92 Ga0207695_10020240 3300025913 Bacteria 7627
93 Ga0207695_10058807 3300025913 Bacteria 3989
94 Ga0207695_10148436 3300025913 Bacteria 2286
95 Ga0207695_10150164 3300025913 Bacteria 2270
96 Ga0207671_10008704 3300025914 Bacteria 8564
97 Ga0207671_10011900 3300025914 Bacteria 7035
98 Ga0207671_10012357 3300025914 Bacteria 6869
99 Ga0207671_10014468 3300025914 Bacteria 6233
100 Ga0207671_10023453 3300025914 Bacteria 4654
101 Ga0207671_10029708 3300025914 Bacteria 4079
102 Ga0207671_10068327 3300025914 Bacteria 2647
103 Ga0207652_10038631 3300025921 Bacteria 4048
104 Ga0207706_10000009 3300025933 Bacteria 200607
105 Ga0207704_10000028 3300025938 Bacteria 122144
106 Ga0207667_10000477 3300025949 Bacteria 53347
107 Ga0207667_10006450 3300025949 Bacteria 14200
108 Ga0207667_10029037 3300025949 Bacteria 6002
109 Ga0207667_10187514 3300025949 Unclassified 2123
110 Ga0207640_10138982 3300025981 Bacteria 1768
111 Ga0207677_10003962 3300026023 Bacteria 7890
112 Ga0207639_10037757 3300026041 Bacteria 3590
113 Ga0207639_10208515 3300026041 Unclassified 1681
114 Ga0207702_10001827 3300026078 Bacteria 20950
115 Ga0207702_10040749 3300026078 Bacteria 3893
116 Ga0207702_10056311 3300026078 Bacteria 3338
117 Ga0207702_10249287 3300026078 Unclassified 1667
118 Ga0207648_10006336 3300026089 Bacteria 11766
119 Ga0207683_10006779 3300026121 Bacteria 9804
120 Ga0207698_10033528 3300026142 Bacteria 3732
121 Ga0268266_10000053 3300028379 Bacteria 295181
122 Ga0307515_10004899 3300028794 Bacteria 27348
123 Ga0307515_10013119 3300028794 Bacteria 15511
124 Ga0265327_10032132 3300031251 Bacteria 2941
125 Ga0307507_10005214 3300033179 Bacteria 21670
126 Ga0395899_0000237 3300037312 Bacteria 74249
127 Ga0395899_0002538 3300037312 Bacteria 14791
128 Ga0395900_0000431 3300037418 Bacteria 60172
129 Ga0395900_0004558 3300037418 Bacteria 14641
130 Ga0395898_0027065 3300037466 Bacteria 5761
131 Ga0395905_0001649 3300037471 Bacteria 26382
132 Ga0395905_0008807 3300037471 Bacteria 9915
133 Ga0395905_0009670 3300037471 Bacteria 9412
134 Ga0395901_0001158 3300038443 Bacteria 28004
135 Ga0395901_0001387 3300038443 Bacteria 25322
136 Ga0395901_0041273 3300038443 Bacteria 4781
137 Ga0466966_0052571 3300044684 Bacteria 2587
138 Ga0495638_0048537 3300046460 Bacteria 2657
139 Ga0495650_0001672 3300046471 Bacteria 20481
140 Ga0495585_0000359 3300046492 Bacteria 44166
141 Ga0495585_0010988 3300046492 Bacteria 5377
142 Ga0495583_0020050 3300046506 Bacteria 3474
143 Ga0495583_0065826 3300046506 Bacteria 1605
144 Ga0495606_0000074 3300046507 Bacteria 170848
145 Ga0495606_0083865 3300046507 Bacteria 1975
146 Ga0495610_0036224 3300046512 Bacteria 2523
147 Ga0495610_0064271 3300046512 Bacteria 1735
148 Ga0495616_0001269 3300046513 Bacteria 17736
149 Ga0495616_0003975 3300046513 Bacteria 9409
150 Ga0495631_0033729 3300046518 Bacteria 2298
151 Ga0495648_0032895 3300046524 Bacteria 3394
152 Ga0495609_0010656 3300046538 Bacteria 4399
153 Ga0495633_0000082 3300046558 Bacteria 125101
154 Ga0495668_0000017 3300046616 Bacteria 434025
155 Ga0495625_0000270 3300046660 Bacteria 80894
156 Ga0495625_0000783 3300046660 Bacteria 44183
157 Ga0495625_0012435 3300046660 Bacteria 6896
158 Ga0495625_0045617 3300046660 Bacteria 3167
159 Ga0495625_0051947 3300046660 Bacteria 2936
160 Ga0495625_0066676 3300046660 Bacteria 2535
161 Ga0495661_0041993 3300046665 Bacteria 2823
162 Ga0495661_0056483 3300046665 Bacteria 2348
163 Ga0495649_0000082 3300046694 Bacteria 82099
164 Ga0495660_0006117 3300046810 Bacteria 7145
165 Ga0495687_005647 3300047443 Bacteria 7903
166 Ga0495687_006209 3300047443 Bacteria 7379
167 Ga0495686_0000303 3300047472 Bacteria 84544
168 Ga0495686_0005200 3300047472 Bacteria 10358
169 Ga0495686_0044401 3300047472 Bacteria 2814
170 Ga0495678_008155 3300049459 Bacteria 5326
171 nmdc:mga0k408_4057_c1 3300050493 Bacteria 7768
172 nmdc:mga0k408_46789_c1 3300050493 Bacteria 2499
173 nmdc:mga08y16_127282_c1 3300050511 Bacteria 2649
174 Ga0500635_0004971 3300053080 Bacteria 3459
175 Ga0500608_038318 3300053122 Bacteria 2293
176 Ga0500618_000027 3300053125 Bacteria 142903
177 Ga0500622_0002235 3300053156 Bacteria 14235
178 Ga0500624_000168 3300053157 Bacteria 26458
179 2599481939 2599185184 Bacteria 6430550
180 2852626223 2852623160 Bacteria 4376875
181 2884934677 2884933994 Bacteria 4535041
182 2919439263 2919437846 Bacteria 6199444
183 2928084098 2928078545 Bacteria 6534839
184 2928152865 2928147474 Bacteria 6512076
185 2932088452 2932082852 Bacteria 6563563
186 2977235190 2977232053 Bacteria 5485925
187 JGI25162J39368_1002054
188 JGI24736J21556_1004271
189 JGI24737J22298_10000681
190 JGI24735J21928_10000005
191 JGI25162J39368_1000682
192 JGI25164J39214_1000613
193 JGI25165J46597_1001008
194 rootH1_10080216
195 rootH1_10100651
196 rootH2_10018482
197 rootH2_10047243
198 rootH2_10227711
199 rootH2_10233854
200 rootH1_10007213
201 rootH1_10330766
202 Ga0065714_10085087
203 Ga0070676_10007187
204 Ga0068868_100125764
205 Ga0070673_100008632
206 Ga0070678_100017640
207 Ga0070662_100002313
208 Ga0068867_100008159
209 Ga0070679_100027955
210 Ga0068853_100018436
211 Ga0070665_100000061
212 Ga0068855_100000831
213 Ga0068855_100014344
214 Ga0068855_100077275
215 Ga0068855_100175168
216 Ga0068855_100183879
217 Ga0068855_100363106
218 Ga0068856_100000006
219 Ga0068856_100143330
220 Ga0068852_100013694
221 Ga0075366_10004089
222 Ga0075366_10032509
223 Ga0097621_100003881
224 Ga0068871_100000622
225 Ga0068865_100007507
226 Ga0105240_10000075
227 Ga0105240_10108866
228 Ga0105240_10146673
229 Ga0105241_10004575
230 Ga0105241_10009106
231 Ga0105241_10235921
232 Ga0105242_10014527
233 Ga0105237_10000465
234 Ga0105237_10021544
235 Ga0105237_10023198
236 Ga0105237_10024810
237 Ga0105237_10059947
238 Ga0105238_10030758
239 Ga0105238_10084640
240 Ga0105239_10000026
241 Ga0105239_10000286
242 Ga0105239_10000886
243 Ga0105239_10002242
244 Ga0105239_10061479
245 Ga0105239_10240118
246 Ga0157373_10004111
247 Ga0157371_10000455
248 Ga0157371_10050979
249 Ga0157370_10062093
250 Ga0157370_10062380
251 Ga0157369_10098521
252 Ga0157374_10000125
253 Ga0157374_10057423
254 Ga0157378_10038747
255 Ga0163162_10000087
256 Ga0163162_10045336
257 Ga0163162_10049864
258 Ga0157372_10103242
259 Ga0157372_10296212
260 Ga0157375_10036705
261 Ga0207427_100564
262 Ga0209437_100230
263 Ga0209437_100526
264 Ga0209026_1001703
265 Ga0209026_1005441
266 Ga0209233_1000457
267 Ga0209233_1000960
268 Ga0209455_1002664
269 Ga0207647_10001219
270 Ga0207647_10006276
271 Ga0207647_10055622
272 Ga0207645_10013463
273 Ga0207705_10000317
274 Ga0207705_10077694
275 Ga0207654_10020832
276 Ga0207695_10000235
277 Ga0207695_10020240
278 Ga0207695_10058807
279 Ga0207695_10148436
280 Ga0207695_10150164
281 Ga0207671_10008704
282 Ga0207671_10011900
283 Ga0207671_10012357
284 Ga0207671_10014468
285 Ga0207671_10023453
286 Ga0207671_10029708
287 Ga0207671_10068327
288 Ga0207652_10038631
289 Ga0207706_10000009
290 Ga0207704_10000028
291 Ga0207667_10000477
292 Ga0207667_10006450
293 Ga0207667_10029037
294 Ga0207667_10187514
295 Ga0207640_10138982
296 Ga0207677_10003962
297 Ga0207639_10037757
298 Ga0207639_10208515
299 Ga0207702_10001827
300 Ga0207702_10040749
301 Ga0207702_10056311
302 Ga0207702_10249287
303 Ga0207648_10006336
304 Ga0207683_10006779
305 Ga0207698_10033528
306 Ga0268266_10000053
307 Ga0307515_10004899
308 Ga0307515_10013119
309 Ga0265327_10032132
310 Ga0307507_10005214
311 Ga0395899_0000237
312 Ga0395899_0002538
313 Ga0395900_0000431
314 Ga0395900_0004558
315 Ga0395898_0027065
316 Ga0395905_0001649
317 Ga0395905_0008807
318 Ga0395905_0009670
319 Ga0395901_0001158
320 Ga0395901_0001387
321 Ga0395901_0041273
322 Ga0466966_0052571
323 Ga0495638_0048537
324 Ga0495650_0001672
325 Ga0495585_0000359
326 Ga0495585_0010988
327 Ga0495583_0020050
328 Ga0495583_0065826
329 Ga0495606_0000074
330 Ga0495606_0083865
331 Ga0495610_0036224
332 Ga0495610_0064271
333 Ga0495616_0001269
334 Ga0495616_0003975
335 Ga0495631_0033729
336 Ga0495648_0032895
337 Ga0495609_0010656
338 Ga0495633_0000082
339 Ga0495668_0000017
340 Ga0495625_0000270
341 Ga0495625_0000783
342 Ga0495625_0012435
343 Ga0495625_0045617
344 Ga0495625_0051947
345 Ga0495625_0066676
346 Ga0495661_0041993
347 Ga0495661_0056483
348 Ga0495649_0000082
349 Ga0495660_0006117
350 Ga0495687_005647
351 Ga0495687_006209
352 Ga0495686_0000303
353 Ga0495686_0005200
354 Ga0495686_0044401
355 Ga0495678_008155
356 nmdc:mga0k408_4057_c1
357 nmdc:mga0k408_46789_c1
358 nmdc:mga08y16_127282_c1
359 Ga0500635_0004971
360 Ga0500608_038318
361 Ga0500618_000027
362 Ga0500622_0002235
363 Ga0500624_000168
364 2599481939
365 2852626223
366 2884934677
367 2919439263
368 2928084098
369 2928152865
370 2932088452
371 2977235190

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13636

Methyltranf_PUA

RNA-binding PUA-like domain of methyltransferase RsmF

423

471

0.98

PF17125

Methyltr_RsmF_N

N-terminal domain of 16S rRNA methyltransferase RsmF

32

111

0.92

PF01189

Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

121

315

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zvh-assembly2.cif.gz_A the crystal structure of nsun6 from pyrococcus horikoshii with sfg 0.8711 59 299
8fky-assembly1.cif.gz_SY human nucleolar pre-60s ribosomal subunit (state f) 0.8704 22 296
8esq-assembly1.cif.gz_q ytm1 associated nascent 60s ribosome state 2 0.8664 22 296
2yxl-assembly1.cif.gz_A crystal structure of ph0851 0.8631 6 296
3m6w-assembly1.cif.gz_A multi-site-specific 16s rrna methyltransferase rsmf from thermus thermophilus in space group p21212 in complex with s-adenosyl-l-methionine 0.8505 7 438
ID Description Score Start End Superfamily
af_Q8I5B4_187_375_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8805 87 297 3.40.50.150
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8797 83 296 3.40.50.150
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8757 83 296 3.40.50.150
af_Q8I5B4_187_375_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8718 87 297 3.40.50.150
af_P40991_338_614_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8548 102 296 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A7Y6XMS4-F1-model_v4 rRNA methyltransferase 0.9647 81 451 GO:0001510
GO:0003723
GO:0008173
AF-A0A7K1YBE8-F1-model_v4 RNA methyltransferase 0.9615 1 456 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A4Q3R883-F1-model_v4 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.9611 45 389 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A150XA78-F1-model_v4 SAM-dependent MTase RsmB/NOP-type domain-containing protein 0.9596 6 451 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A7V9SSA0-F1-model_v4 RNA methyltransferase 0.9576 6 454 GO:0001510
GO:0003723
GO:0006364
GO:0008173

Map