F284170

General Info

Members Datasets Scaffolds Average Seq Length
185 147 370 703

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100030442|Ga0075431_1000304423
Length 755
Sequence MGPATAPAQPRSRGQTPPPRFARTEEPSREELLAAPLRWPRPGSLERPLTVLPGVGPKLAASAAEAGIETIGDLLLRVPHSYRDRSEVRPLGELKLGEQATILAEVRKATLKRPRRRGLTIVEATVADDSGSAKAVWFNQPWLKDRLLAGTTLLLNGVLDRRGFRVAEHEFLPAAGGAGLGDHPSVSEGGGTDPVTGPAARVAPGIHTTGLVPVHPATERLKAGRIREWVWQALPRADDALEPLPAELRTRRALCGAAEALRTVHFPVSEEDAEEARRRLAFEELLLYQAVLAMRREGRRTALPGPRLAGAGELAGRWLGSLPFEPTADQRRAFADLDRDLASAEPMQRLLMGEVGSGKTVVALYAMLSALEAGYQAALMAPTETLAEQHAATLDRLLAAEPVPFALLTGATPASRRREALGRLSSGELPIVVGTHALIEPDVRFARLAVCVVDEQHRFGVRQRAALDAKGPDGMAPHVLHMTATPIPRTLSLTAYGDLDVTELRELPAGRRPVRTWLVDEDSRAGAYEFVRERLREGRQAFVVCPLVSESEKLQARAATAEALELAEGELRGFAVDVLHGQMTSAAKQEAMAGFAAGRTDVLVATTVIEVGIDVPNATVMLVEGAERYGVSQLHQLRGRIGRGEHESQCLLFAEEAGELARRRLEAVAAERDGFRLAEVDLALRGEGEILGTRQHGLPRFAVAELPDDTTSLLAARQEMLSLIGRHGSLAAPELALLREAARRRFGGEAMPIPA

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
19 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
25 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
26 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
27 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
41 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
64 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
65 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
66 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
67 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
77 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
78 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
79 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
80 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
81 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
82 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
83 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
84 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
87 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
88 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
89 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
90 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
91 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
92 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
93 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
96 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
97 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
98 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
106 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
111 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
121 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
122 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
125 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
126 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
127 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
128 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
129 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
130 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
131 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
132 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
133 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
134 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
137 2671180694 Paenibacillus sp. A3 Isolate Unclassified
138 2857472729 Cohnella sp. R-74144 Isolate Unclassified
139 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
140 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
141 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
142 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
143 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
144 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
145 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
146 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
147 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.05
Metatranscriptomes 0
Isolates 5.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.27
Nodule 0
Rhizoplane 9.73
Rhizosphere 74.05
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100030442 3300006847 Bacteria 5560
2 JGI24746J21847_1002570 3300001977 Bacteria 2884
3 Ga0070683_100006476 3300005329 Bacteria 9831
4 Ga0070682_100000017 3300005337 Bacteria 235228
5 Ga0070682_100002033 3300005337 Bacteria 11305
6 Ga0070692_10019133 3300005345 Bacteria 3303
7 Ga0070674_100000005 3300005356 Bacteria 168443
8 Ga0070674_100000009 3300005356 Bacteria 143336
9 Ga0070673_100011307 3300005364 Bacteria 6087
10 Ga0070659_100001330 3300005366 Bacteria 17814
11 Ga0070713_100008021 3300005436 Bacteria 7464
12 Ga0070711_100022726 3300005439 Bacteria 4069
13 Ga0070681_10011180 3300005458 Bacteria 8883
14 Ga0068867_100000955 3300005459 Bacteria 19672
15 Ga0070685_10020487 3300005466 Bacteria 3578
16 Ga0070685_10038403 3300005466 Bacteria 2715
17 Ga0070686_100037455 3300005544 Bacteria 3008
18 Ga0070665_100000040 3300005548 Bacteria 305480
19 Ga0070664_100023248 3300005564 Bacteria 5118
20 Ga0068857_100007978 3300005577 Bacteria 9139
21 Ga0068864_100000031 3300005618 Bacteria 215331
22 Ga0068864_100061400 3300005618 Bacteria 3255
23 Ga0068866_10000003 3300005718 Bacteria 281675
24 Ga0068866_10000340 3300005718 Bacteria 22024
25 Ga0068858_100001002 3300005842 Bacteria 29191
26 Ga0068858_100014603 3300005842 Bacteria 7398
27 Ga0068858_100087314 3300005842 Bacteria 2901
28 Ga0081538_10000103 3300005981 Bacteria 83685
29 Ga0075365_10000910 3300006038 Bacteria 12432
30 Ga0075365_10016218 3300006038 Bacteria 4525
31 Ga0075365_10019620 3300006038 Bacteria 4177
32 Ga0075363_100030754 3300006048 Bacteria 2781
33 Ga0075364_10034576 3300006051 Bacteria 3262
34 Ga0070715_10000001 3300006163 Bacteria 693690
35 Ga0075362_10000356 3300006177 Bacteria 13118
36 Ga0075369_10000108 3300006186 Bacteria 22404
37 Ga0075366_10000001 3300006195 Bacteria 569172
38 Ga0097621_100000003 3300006237 Bacteria 164830
39 Ga0097621_100005675 3300006237 Bacteria 8810
40 Ga0068871_100000013 3300006358 Bacteria 102533
41 Ga0075431_100000832 3300006847 Bacteria 26974
42 Ga0075434_100026261 3300006871 Bacteria 5703
43 Ga0111539_10002660 3300009094 Bacteria 23683
44 Ga0105245_10000336 3300009098 Bacteria 44275
45 Ga0105245_10002503 3300009098 Bacteria 16564
46 Ga0105245_10003226 3300009098 Bacteria 14610
47 Ga0105245_10006775 3300009098 Bacteria 10043
48 Ga0105245_10007884 3300009098 Bacteria 9315
49 Ga0114129_10088160 3300009147 Bacteria 4303
50 Ga0105242_10049625 3300009176 Bacteria 3415
51 Ga0105238_10000009 3300009551 Bacteria 288729
52 Ga0157375_10012290 3300013308 Bacteria 7592
53 Ga0157377_10010832 3300014745 Bacteria 4527
54 Ga0157379_10007721 3300014968 Bacteria 9312
55 Ga0157376_10020129 3300014969 Bacteria 5156
56 Ga0209566_100568 3300025225 Bacteria 24100
57 Ga0207642_10000002 3300025899 Bacteria 658166
58 Ga0207642_10007170 3300025899 Bacteria 3750
59 Ga0207685_10000005 3300025905 Bacteria 289944
60 Ga0207693_10008317 3300025915 Bacteria 8491
61 Ga0207663_10040718 3300025916 Bacteria 2826
62 Ga0207657_10001043 3300025919 Bacteria 29329
63 Ga0207694_10000004 3300025924 Bacteria 967075
64 Ga0207687_10000013 3300025927 Bacteria 299826
65 Ga0207700_10002728 3300025928 Bacteria 10181
66 Ga0207690_10008945 3300025932 Bacteria 5943
67 Ga0207686_10025377 3300025934 Bacteria 3447
68 Ga0207669_10000001 3300025937 Bacteria 377747
69 Ga0207669_10000006 3300025937 Bacteria 176348
70 Ga0207669_10018545 3300025937 Bacteria 3601
71 Ga0207669_10062795 3300025937 Bacteria 2290
72 Ga0207691_10050811 3300025940 Bacteria 3793
73 Ga0207651_10014904 3300025960 Bacteria 4502
74 Ga0207703_10000078 3300026035 Bacteria 115634
75 Ga0207703_10040315 3300026035 Bacteria 3737
76 Ga0207708_10002776 3300026075 Bacteria 12866
77 Ga0207702_10097017 3300026078 Bacteria 2594
78 Ga0207648_10010326 3300026089 Bacteria 8856
79 Ga0207648_10016437 3300026089 Bacteria 6759
80 Ga0207676_10000031 3300026095 Bacteria 215877
81 Ga0207674_10019585 3300026116 Bacteria 7328
82 Ga0207683_10014023 3300026121 Bacteria 6833
83 Ga0268266_10000045 3300028379 Bacteria 312955
84 Ga0268266_10093685 3300028379 Bacteria 2636
85 Ga0265337_1000006 3300028556 Bacteria 99562
86 Ga0265326_10000072 3300028558 Bacteria 57044
87 Ga0265322_10000001 3300028654 Bacteria 543854
88 Ga0265332_10018361 3300031238 Bacteria 3086
89 Ga0265320_10000002 3300031240 Bacteria 542875
90 Ga0265331_10000921 3300031250 Bacteria 23544
91 Ga0265327_10000011 3300031251 Bacteria 543807
92 Ga0265314_10000487 3300031711 Bacteria 51708
93 Ga0307416_100117665 3300032002 Bacteria 2360
94 Ga0395900_0009858 3300037418 Bacteria 9784
95 Ga0395900_0194816 3300037418 Bacteria 2054
96 Ga0395898_0002458 3300037466 Bacteria 21853
97 Ga0395905_0011500 3300037471 Bacteria 8552
98 Ga0395901_0009854 3300038443 Bacteria 9684
99 Ga0395901_0063002 3300038443 Bacteria 3859
100 Ga0436365_0751596 3300039437 Bacteria 18860
101 Ga0436361_0312326 3300039447 Bacteria 3337
102 Ga0436361_0382231 3300039447 Bacteria 2806
103 Ga0436363_1557839 3300039450 Bacteria 2714
104 Ga0439464_0003729 3300042439 Bacteria 3866
105 Ga0495603_0013109 3300046455 Bacteria 5010
106 Ga0495629_0066791 3300046459 Bacteria 2510
107 Ga0495641_0000050 3300046461 Bacteria 73259
108 Ga0495653_0071966 3300046463 Bacteria 2583
109 Ga0495608_0000288 3300046511 Bacteria 35332
110 Ga0495652_0045251 3300046529 Bacteria 3786
111 Ga0495587_0008986 3300046536 Bacteria 6413
112 Ga0495622_0000082 3300046557 Bacteria 85266
113 Ga0495667_0000047 3300046559 Bacteria 117718
114 Ga0495634_0001463 3300046642 Bacteria 20931
115 Ga0495658_0009320 3300046683 Bacteria 4889
116 Ga0495624_0010354 3300046690 Bacteria 6424
117 Ga0495660_0011390 3300046810 Bacteria 5164
118 Ga0495676_0000127 3300047321 Bacteria 57750
119 Ga0495680_0000569 3300047322 Bacteria 41472
120 Ga0495680_0015389 3300047322 Bacteria 6601
121 Ga0495680_0033536 3300047322 Bacteria 4155
122 Ga0495680_0047419 3300047322 Bacteria 3380
123 Ga0495675_0051308 3300047444 Bacteria 2620
124 Ga0495679_003327 3300047446 Bacteria 7769
125 Ga0496100_0009456 3300048903 Bacteria 5480
126 Ga0496101_0018691 3300048904 Bacteria 4716
127 Ga0496102_0006319 3300048905 Bacteria 10101
128 Ga0496104_0022252 3300048907 Bacteria 5822
129 Ga0496105_0024621 3300048908 Bacteria 4891
130 Ga0496108_0000001 3300048911 Bacteria 919044
131 Ga0496108_0011667 3300048911 Bacteria 7150
132 Ga0496108_0020233 3300048911 Bacteria 5469
133 Ga0496108_0030911 3300048911 Bacteria 4438
134 Ga0496109_0000004 3300048912 Bacteria 404818
135 Ga0496109_0010805 3300048912 Bacteria 7816
136 Ga0496110_0040146 3300048913 Bacteria 4078
137 Ga0496112_0004408 3300048915 Bacteria 11912
138 Ga0496113_0019804 3300048916 Bacteria 4716
139 Ga0496114_0003369 3300048917 Bacteria 12277
140 Ga0496115_0000010 3300048918 Bacteria 227112
141 Ga0496115_0001513 3300048918 Bacteria 16703
142 Ga0496115_0017935 3300048918 Bacteria 5422
143 Ga0496116_0015712 3300048919 Bacteria 5969
144 Ga0496122_0050229 3300048925 Bacteria 3183
145 Ga0496125_0000497 3300048928 Bacteria 68483
146 Ga0496125_0012189 3300048928 Bacteria 8554
147 Ga0501039_0041313 3300049575 Bacteria 3561
148 Ga0501040_0016999 3300049576 Bacteria 4824
149 Ga0501041_0033508 3300049577 Bacteria 3108
150 Ga0501046_0031552 3300049580 Bacteria 4294
151 Ga0501070_0054638 3300049586 Bacteria 3311
152 Ga0501071_0045046 3300049587 Bacteria 3166
153 Ga0501072_0016840 3300049588 Bacteria 5616
154 Ga0501076_0034310 3300049592 Bacteria 3965
155 nmdc:mga03683_360_c1 3300050489 Bacteria 13117
156 nmdc:mga00v17_13786_c1 3300050491 Bacteria 4494
157 nmdc:mga0k408_1_c1 3300050493 Bacteria 1089059
158 nmdc:mga06r32_1573_c1 3300050510 Bacteria 20560
159 nmdc:mga0a205_8569_c1 3300050515 Bacteria 9303
160 nmdc:mga0sz30_8_c2 3300050516 Bacteria 48225
161 Ga0495601_0001717 3300053077 Bacteria 12112
162 Ga0495601_0003080 3300053077 Bacteria 9512
163 Ga0495601_0035229 3300053077 Bacteria 3123
164 Ga0495612_0000955 3300053078 Bacteria 11867
165 Ga0495619_0000077 3300053085 Bacteria 73017
166 Ga0495619_0000373 3300053085 Bacteria 30829
167 Ga0500651_0000027 3300053093 Bacteria 116666
168 Ga0500566_0000001 3300053094 Bacteria 1101031
169 Ga0500555_000001 3300053103 Bacteria 1353713
170 Ga0500562_000001 3300053108 Bacteria 1178987
171 Ga0500614_001503 3300053123 Bacteria 5557
172 Ga0500616_0000017 3300053153 Bacteria 622969
173 Ga0501084_0024820 3300054114 Bacteria 5003
174 Ga0530510_0026225 3300061734 Bacteria 4169
175 2673819607 2671180694 Bacteria 7506943
176 2857473074 2857472729 Bacteria 6568124
177 2865000077 2864997549 Bacteria 5139696
178 2865004237 2865002811 Bacteria 6333767
179 2889296341 2889295896 Bacteria 4704906
180 2919427343 2919425241 Bacteria 8055701
181 2980125600 2980125574 Bacteria 5567337
182 2981288084 2981284811 Bacteria 4641497
183 2981292200 2981289755 Bacteria 4641509
184 2981983703 2981980479 Bacteria 4641628
185 2981988257 2981985349 Bacteria 4641497
186 Ga0075431_100030442
187 JGI24746J21847_1002570
188 Ga0070683_100006476
189 Ga0070682_100000017
190 Ga0070682_100002033
191 Ga0070692_10019133
192 Ga0070674_100000005
193 Ga0070674_100000009
194 Ga0070673_100011307
195 Ga0070659_100001330
196 Ga0070713_100008021
197 Ga0070711_100022726
198 Ga0070681_10011180
199 Ga0068867_100000955
200 Ga0070685_10020487
201 Ga0070685_10038403
202 Ga0070686_100037455
203 Ga0070665_100000040
204 Ga0070664_100023248
205 Ga0068857_100007978
206 Ga0068864_100000031
207 Ga0068864_100061400
208 Ga0068866_10000003
209 Ga0068866_10000340
210 Ga0068858_100001002
211 Ga0068858_100014603
212 Ga0068858_100087314
213 Ga0081538_10000103
214 Ga0075365_10000910
215 Ga0075365_10016218
216 Ga0075365_10019620
217 Ga0075363_100030754
218 Ga0075364_10034576
219 Ga0070715_10000001
220 Ga0075362_10000356
221 Ga0075369_10000108
222 Ga0075366_10000001
223 Ga0097621_100000003
224 Ga0097621_100005675
225 Ga0068871_100000013
226 Ga0075431_100000832
227 Ga0075434_100026261
228 Ga0111539_10002660
229 Ga0105245_10000336
230 Ga0105245_10002503
231 Ga0105245_10003226
232 Ga0105245_10006775
233 Ga0105245_10007884
234 Ga0114129_10088160
235 Ga0105242_10049625
236 Ga0105238_10000009
237 Ga0157375_10012290
238 Ga0157377_10010832
239 Ga0157379_10007721
240 Ga0157376_10020129
241 Ga0209566_100568
242 Ga0207642_10000002
243 Ga0207642_10007170
244 Ga0207685_10000005
245 Ga0207693_10008317
246 Ga0207663_10040718
247 Ga0207657_10001043
248 Ga0207694_10000004
249 Ga0207687_10000013
250 Ga0207700_10002728
251 Ga0207690_10008945
252 Ga0207686_10025377
253 Ga0207669_10000001
254 Ga0207669_10000006
255 Ga0207669_10018545
256 Ga0207669_10062795
257 Ga0207691_10050811
258 Ga0207651_10014904
259 Ga0207703_10000078
260 Ga0207703_10040315
261 Ga0207708_10002776
262 Ga0207702_10097017
263 Ga0207648_10010326
264 Ga0207648_10016437
265 Ga0207676_10000031
266 Ga0207674_10019585
267 Ga0207683_10014023
268 Ga0268266_10000045
269 Ga0268266_10093685
270 Ga0265337_1000006
271 Ga0265326_10000072
272 Ga0265322_10000001
273 Ga0265332_10018361
274 Ga0265320_10000002
275 Ga0265331_10000921
276 Ga0265327_10000011
277 Ga0265314_10000487
278 Ga0307416_100117665
279 Ga0395900_0009858
280 Ga0395900_0194816
281 Ga0395898_0002458
282 Ga0395905_0011500
283 Ga0395901_0009854
284 Ga0395901_0063002
285 Ga0436365_0751596
286 Ga0436361_0312326
287 Ga0436361_0382231
288 Ga0436363_1557839
289 Ga0439464_0003729
290 Ga0495603_0013109
291 Ga0495629_0066791
292 Ga0495641_0000050
293 Ga0495653_0071966
294 Ga0495608_0000288
295 Ga0495652_0045251
296 Ga0495587_0008986
297 Ga0495622_0000082
298 Ga0495667_0000047
299 Ga0495634_0001463
300 Ga0495658_0009320
301 Ga0495624_0010354
302 Ga0495660_0011390
303 Ga0495676_0000127
304 Ga0495680_0000569
305 Ga0495680_0015389
306 Ga0495680_0033536
307 Ga0495680_0047419
308 Ga0495675_0051308
309 Ga0495679_003327
310 Ga0496100_0009456
311 Ga0496101_0018691
312 Ga0496102_0006319
313 Ga0496104_0022252
314 Ga0496105_0024621
315 Ga0496108_0000001
316 Ga0496108_0011667
317 Ga0496108_0020233
318 Ga0496108_0030911
319 Ga0496109_0000004
320 Ga0496109_0010805
321 Ga0496110_0040146
322 Ga0496112_0004408
323 Ga0496113_0019804
324 Ga0496114_0003369
325 Ga0496115_0000010
326 Ga0496115_0001513
327 Ga0496115_0017935
328 Ga0496116_0015712
329 Ga0496122_0050229
330 Ga0496125_0000497
331 Ga0496125_0012189
332 Ga0501039_0041313
333 Ga0501040_0016999
334 Ga0501041_0033508
335 Ga0501046_0031552
336 Ga0501070_0054638
337 Ga0501071_0045046
338 Ga0501072_0016840
339 Ga0501076_0034310
340 nmdc:mga03683_360_c1
341 nmdc:mga00v17_13786_c1
342 nmdc:mga0k408_1_c1
343 nmdc:mga06r32_1573_c1
344 nmdc:mga0a205_8569_c1
345 nmdc:mga0sz30_8_c2
346 Ga0495601_0001717
347 Ga0495601_0003080
348 Ga0495601_0035229
349 Ga0495612_0000955
350 Ga0495619_0000077
351 Ga0495619_0000373
352 Ga0500651_0000027
353 Ga0500566_0000001
354 Ga0500555_000001
355 Ga0500562_000001
356 Ga0500614_001503
357 Ga0500616_0000017
358 Ga0501084_0024820
359 Ga0530510_0026225
360 2673819607
361 2857473074
362 2865000077
363 2865004237
364 2889296341
365 2919427343
366 2980125600
367 2981288084
368 2981292200
369 2981983703
370 2981988257

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19833

RecG_dom3_C

ATP-dependent DNA helicase RecG, domain 3, C-terminal

671

746

0.93

PF17191

RecG_wedge

RecG wedge domain

48

171

0.91

PF00271

Helicase_C

Helicase conserved C-terminal domain

526

645

0.85

PF00270

DEAD

DEAD/DEAH box helicase

327

494

0.79

PF04851

ResIII

Type III restriction enzyme, res subunit

323

488

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
3e0e-assembly1.cif.gz_A crystal structure of a domain of replication protein a from methanococcus maripaludis. northeast structural genomics targe mrr110b 0.9061 43 128
3k5m-assembly1.cif.gz_A crystal structure of e.coli pol ii-abasic dna-ddgtp lt(-2, 2) ternary complex 0.8525 54 92
3k58-assembly1.cif.gz_A crystal structure of e.coli pol ii-normal dna-dttp ternary complex 0.8515 54 92
3k59-assembly1.cif.gz_A crystal structure of e.coli pol ii-normal dna-dctp ternary complex 0.8509 54 92
3e0e-assembly1.cif.gz_A crystal structure of a domain of replication protein a from methanococcus maripaludis. northeast structural genomics targe mrr110b 0.8499 43 128
ID Description Score Start End Superfamily
af_A0A1D6HHW2_464_714_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9339 264 456 3.40.50.300
af_P24230_457_630_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9221 465 637 3.40.50.300
af_O50581_207_441_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9163 220 458 3.40.50.300
af_O50581_207_441_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9126 220 458 3.40.50.300
af_P24230_457_630_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9121 465 637 3.40.50.300
ID Description Score Start End GO Terms
AF-X0V5J7-F1-model_v4 Helicase ATP-binding domain-containing protein 0.9579 267 389 GO:0003677
GO:0003678
GO:0005524
GO:0006281
GO:0016787
AF-J4SJG1-F1-model_v4 deleted 0.9511 289 397
AF-X0V5J7-F1-model_v4 Helicase ATP-binding domain-containing protein 0.9431 267 389 GO:0003677
GO:0003678
GO:0005524
GO:0006281
GO:0016787
AF-A0A7C7G1T6-F1-model_v4 deleted 0.9404 249 398
AF-A0A536CBE8-F1-model_v4 DEAD/DEAH box helicase 0.9369 254 415 GO:0003677
GO:0003678
GO:0005524
GO:0006281
GO:0016787

Map