F285192

General Info

Members Datasets Scaffolds Average Seq Length
185 126 370 326

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2966921586|2966923098
Length 356
Sequence SDYPGEVIATLSQYSVLCLSSAMGVYALAFIFFAVDLARRASVADGESIEVIQEAERVASAAAADRAANGRATVATVGSGRTATLSRLGSRVEDEVYAAPARSTAMRVGFSLTLLAFVLHLAATVLRGIAAGRVPWANMYEFSMTGTLIIIGVFLAVQVRWDLRFLGAFVTGLVLVLLGVAIVNYYVAVVPLPPALQSYWLVIHVLVAILGTAFFALGFALSVTQLLQARREVSGDSPRSVLRFLRTLPGSLTLENLAYRVTIIGFILWTFTLIAGAVWAEKAWGRYWGWDTKEVWTFIIWTIYAGYIHARATRGWRGTPSAWLAIVGFAAVMFNFGVVNVFFKGLHAYSGLDTGM

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
9 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
10 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
11 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
12 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
13 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
19 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
22 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
23 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
24 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
30 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
31 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
35 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
41 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
42 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
43 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
44 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
45 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
46 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
47 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
48 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
49 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
50 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
51 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
52 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
53 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
54 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
55 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
58 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
59 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
60 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
61 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
62 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
63 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
64 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
65 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
66 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
67 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
68 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
69 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
70 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
71 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
72 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
88 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
89 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
92 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
93 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
94 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
95 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
96 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
97 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
98 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
99 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
100 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
101 2643221549 Agromyces sp. Root1464 Isolate Unclassified
102 2643221616 Leifsonia sp. Root227 Isolate Unclassified
103 2643221619 Agromyces sp. Root81 Isolate Unclassified
104 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
105 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
106 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
107 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
108 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
109 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
110 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
111 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
112 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
113 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
114 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
115 2928153084 Leifsonia sp. 563 Isolate Unclassified
116 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
117 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
118 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
119 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
120 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
121 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
122 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
123 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
124 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
125 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
126 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.32
Metatranscriptomes 1.08
Isolates 14.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.46
Nodule 0
Rhizoplane 4.32
Rhizosphere 63.24
Stem 0
Stem Tuber 0.54
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10015492 3300001979 Bacteria 2783
2 JGI24739J22299_10005973 3300001989 Bacteria 4606
3 JGI24737J22298_10004652 3300001990 Bacteria 4772
4 JGI24735J21928_10011321 3300002067 Bacteria 2831
5 JGI25164J39214_1001076 3300002772 Bacteria 8055
6 JGI25165J46597_1000005 3300003214 Bacteria 623702
7 Ga0006562J51391_1012772 3300003578 Bacteria 30815
8 Ga0055533_1000002 3300003756 Bacteria 1196393
9 Ga0055532_1004322 3300003758 Bacteria 2175
10 Ga0055525_1000142 3300003759 Bacteria 100877
11 Ga0055527_1000004 3300003760 Bacteria 570634
12 Ga0055542_1000307 3300003762 Bacteria 53734
13 Ga0055529_1000008 3300003763 Bacteria 394786
14 Ga0070668_100026869 3300005347 Bacteria 4370
15 Ga0068867_100261117 3300005459 Bacteria 1412
16 Ga0068856_100247025 3300005614 Bacteria 1800
17 Ga0105238_10317425 3300009551 Bacteria 1544
18 Ga0157369_10002153 3300013105 Bacteria 23748
19 Ga0157369_10002366 3300013105 Bacteria 22674
20 Ga0157369_10032701 3300013105 Bacteria 5717
21 Ga0157369_10082518 3300013105 Bacteria 3439
22 Ga0157369_10320377 3300013105 Bacteria 1612
23 Ga0163162_10537300 3300013306 Bacteria 1298
24 Ga0157372_10166528 3300013307 Bacteria 2549
25 Ga0157372_10607543 3300013307 Bacteria 1275
26 Ga0157375_10320631 3300013308 Bacteria 1714
27 Ga0157380_10015582 3300014326 Bacteria 5589
28 Ga0206353_10025853 3300020082 Bacteria 1358
29 Ga0209566_100013 3300025225 Bacteria 474033
30 Ga0209674_100001 3300025226 Bacteria 4013750
31 Ga0209672_100011 3300025228 Bacteria 856297
32 Ga0209147_100238 3300025229 Bacteria 54120
33 Ga0209563_100001 3300025230 Bacteria 4013775
34 Ga0209563_100348 3300025230 Bacteria 17586
35 Ga0207427_101123 3300025231 Bacteria 10698
36 Ga0209437_101149 3300025233 Bacteria 7903
37 Ga0209258_103985 3300025242 Bacteria 2953
38 Ga0209677_100001 3300025253 Bacteria 4013787
39 Ga0209677_100659 3300025253 Bacteria 18101
40 Ga0209148_1000023 3300025254 Bacteria 680511
41 Ga0209233_1000001 3300025261 Bacteria 2992747
42 Ga0209455_1000023 3300025272 Bacteria 680449
43 Ga0209455_1002992 3300025272 Bacteria 6209
44 Ga0207688_10034187 3300025901 Bacteria 2814
45 Ga0207647_10017446 3300025904 Bacteria 4879
46 Ga0207647_10047976 3300025904 Bacteria 2654
47 Ga0207668_10067542 3300025972 Bacteria 2539
48 Ga0207683_10136500 3300026121 Bacteria 2208
49 Ga0307513_10141671 3300031456 Bacteria 2329
50 Ga0307514_10001836 3300031649 Bacteria 23541
51 Ga0307409_100457595 3300031995 Bacteria 1233
52 Ga0395900_0001084 3300037418 Bacteria 34636
53 Ga0395900_0064861 3300037418 Bacteria 3752
54 Ga0395900_0095527 3300037418 Bacteria 3054
55 Ga0395898_0000270 3300037466 Bacteria 127152
56 Ga0395901_0151483 3300038443 Bacteria 2437
57 Ga0466972_0034597 3300044658 Bacteria 2474
58 Ga0466972_0095583 3300044658 Bacteria 1408
59 Ga0466965_0010875 3300044683 Bacteria 4257
60 Ga0466965_0157395 3300044683 Bacteria 1190
61 Ga0466966_0028287 3300044684 Bacteria 3652
62 Ga0466966_0076454 3300044684 Bacteria 2091
63 Ga0466961_0096096 3300044693 Bacteria 1868
64 Ga0466963_0088425 3300044694 Bacteria 2108
65 Ga0466970_0032967 3300044765 Bacteria 2737
66 Ga0466970_0062035 3300044765 Bacteria 2003
67 Ga0466957_0324389 3300044842 Bacteria 1040
68 Ga0466960_0014589 3300044901 Bacteria 3369
69 Ga0466960_0096671 3300044901 Bacteria 1514
70 Ga0466959_0018002 3300045049 Bacteria 5183
71 Ga0466958_0078618 3300045836 Bacteria 2027
72 Ga0466967_0098281 3300045976 Bacteria 2673
73 Ga0495590_0000142 3300046457 Bacteria 43345
74 Ga0495686_0036705 3300047472 Bacteria 3145
75 Ga0496100_0013443 3300048903 Bacteria 4721
76 Ga0496102_0041310 3300048905 Bacteria 4175
77 Ga0496102_0284032 3300048905 Bacteria 1560
78 Ga0496102_0299135 3300048905 Bacteria 1516
79 Ga0496107_0076406 3300048910 Bacteria 2439
80 Ga0496113_0138918 3300048916 Bacteria 1911
81 Ga0496114_0099971 3300048917 Bacteria 2474
82 Ga0496115_0032909 3300048918 Bacteria 4092
83 Ga0496117_0000034 3300048920 Bacteria 328334
84 Ga0496117_0011299 3300048920 Bacteria 8007
85 Ga0496118_0004617 3300048921 Bacteria 16177
86 Ga0496119_0046923 3300048922 Bacteria 2692
87 Ga0496121_0048482 3300048924 Bacteria 3613
88 Ga0496121_0182674 3300048924 Bacteria 1512
89 Ga0496121_0319938 3300048924 Bacteria 1045
90 Ga0496122_0001782 3300048925 Bacteria 33003
91 Ga0496122_0002771 3300048925 Bacteria 24152
92 Ga0496123_0010789 3300048926 Bacteria 8018
93 Ga0496126_0001593 3300048929 Bacteria 34557
94 Ga0496126_0029607 3300048929 Bacteria 5200
95 Ga0501031_0006453 3300049568 Bacteria 7649
96 Ga0501031_0103555 3300049568 Bacteria 1857
97 Ga0501033_0000262 3300049570 Bacteria 50390
98 Ga0501033_0067864 3300049570 Bacteria 2622
99 Ga0501034_0002595 3300049571 Bacteria 21477
100 Ga0501034_0004069 3300049571 Bacteria 16416
101 Ga0501034_0010190 3300049571 Bacteria 9806
102 Ga0501034_0024714 3300049571 Bacteria 6111
103 Ga0501034_0046090 3300049571 Bacteria 4405
104 Ga0501034_0276350 3300049571 Bacteria 1619
105 Ga0501036_0004332 3300049572 Bacteria 11455
106 Ga0501036_0231120 3300049572 Bacteria 1552
107 Ga0501037_0002799 3300049573 Bacteria 12640
108 Ga0501037_0003591 3300049573 Bacteria 11259
109 Ga0501037_0059704 3300049573 Bacteria 2781
110 Ga0501038_0006758 3300049574 Bacteria 10595
111 Ga0501038_0017383 3300049574 Bacteria 6500
112 Ga0501038_0020618 3300049574 Bacteria 5924
113 Ga0501039_0025160 3300049575 Bacteria 4573
114 Ga0501039_0116117 3300049575 Bacteria 2095
115 Ga0501041_0153873 3300049577 Bacteria 1437
116 Ga0501042_0091750 3300049578 Bacteria 2180
117 Ga0501043_0007879 3300049579 Bacteria 8424
118 Ga0501043_0011960 3300049579 Bacteria 6790
119 Ga0501043_0244869 3300049579 Bacteria 1382
120 Ga0501046_0000410 3300049580 Bacteria 42702
121 Ga0501046_0001444 3300049580 Bacteria 22852
122 Ga0501047_0000344 3300049581 Bacteria 52888
123 Ga0501047_0032889 3300049581 Bacteria 5007
124 Ga0501047_0135725 3300049581 Bacteria 2340
125 Ga0501047_0160322 3300049581 Bacteria 2121
126 Ga0501047_0274183 3300049581 Bacteria 1532
127 Ga0501047_0391364 3300049581 Bacteria 1223
128 Ga0501048_0009737 3300049582 Bacteria 7207
129 Ga0501048_0011654 3300049582 Bacteria 6557
130 Ga0501048_0041766 3300049582 Bacteria 3285
131 Ga0501068_0052440 3300049584 Bacteria 2468
132 Ga0501070_0000098 3300049586 Bacteria 75579
133 Ga0501070_0025648 3300049586 Bacteria 4944
134 Ga0501073_0004347 3300049589 Bacteria 10641
135 Ga0501080_0353535 3300049742 Bacteria 1326
136 Ga0501035_0002127 3300049822 Bacteria 19704
137 Ga0501035_0024160 3300049822 Bacteria 5576
138 Ga0501035_0036857 3300049822 Bacteria 4430
139 Ga0501044_0000317 3300049823 Bacteria 60978
140 Ga0501044_0002444 3300049823 Bacteria 21189
141 Ga0501044_0058575 3300049823 Bacteria 3949
142 Ga0501044_0076806 3300049823 Bacteria 3388
143 Ga0501044_0122762 3300049823 Bacteria 2596
144 Ga0501045_0003703 3300049824 Bacteria 10515
145 Ga0501045_0051292 3300049824 Bacteria 3011
146 Ga0500635_0000038 3300053080 Bacteria 93707
147 Ga0500650_0021532 3300053098 Bacteria 2842
148 Ga0500556_0000041 3300053104 Bacteria 134317
149 Ga0500559_0000108 3300053136 Bacteria 65474
150 Ga0500559_0039861 3300053136 Bacteria 2044
151 Ga0500568_0000003 3300053139 Bacteria 863587
152 Ga0500573_0000011 3300053140 Bacteria 209484
153 Ga0500573_0005294 3300053140 Bacteria 6897
154 Ga0500573_0010830 3300053140 Bacteria 5094
155 Ga0500573_0163607 3300053140 Bacteria 1209
156 Ga0500573_0203426 3300053140 Bacteria 1049
157 Ga0500616_0000152 3300053153 Bacteria 116194
158 Ga0500645_003576 3300053730 Bacteria 6242
159 2966923098 2966921586 Bacteria 3092803
160 2643766760 2643221549 Bacteria 4042819
161 2644097173 2643221616 Bacteria 4066575
162 2644113330 2643221619 Bacteria 4158469
163 2644181378 2643221632 Bacteria 3406696
164 2723640389 2721755702 Bacteria 4373124
165 2844844493 2844841374 Bacteria 3917147
166 2844854053 2844852863 Bacteria 3849151
167 2852677439 2852677369 Bacteria 3768884
168 2870625002 2870622029 Bacteria 3643329
169 2884763631 2884763398 Bacteria 4091164
170 2897562015 2897561785 Bacteria 3256946
171 2919056450 2919055335 Bacteria 3875751
172 2919444273 2919443155 Bacteria 4072969
173 2919526444 2919523602 Bacteria 3788128
174 2928155258 2928153084 Bacteria 4020257
175 2935409927 2935409751 Bacteria 4179611
176 2939659757 2939657138 Bacteria 3740283
177 2939664298 2939660829 Bacteria 3784848
178 2964327639 2964326757 Bacteria 3290868
179 2995726676 2995726249 Bacteria 3470435
180 8002813479 8002811521 Bacteria 2942897
181 8046354971 8046352972 Bacteria 3613806
182 8055037187 8055034563 Bacteria 3562128
183 8055039403 8055037949 Bacteria 3337834
184 8056040128 8056037122 Bacteria 3854319
185 8057347110 8057345674 Bacteria 4160394
186 JGI24740J21852_10015492
187 JGI24739J22299_10005973
188 JGI24737J22298_10004652
189 JGI24735J21928_10011321
190 JGI25164J39214_1001076
191 JGI25165J46597_1000005
192 Ga0006562J51391_1012772
193 Ga0055533_1000002
194 Ga0055532_1004322
195 Ga0055525_1000142
196 Ga0055527_1000004
197 Ga0055542_1000307
198 Ga0055529_1000008
199 Ga0070668_100026869
200 Ga0068867_100261117
201 Ga0068856_100247025
202 Ga0105238_10317425
203 Ga0157369_10002153
204 Ga0157369_10002366
205 Ga0157369_10032701
206 Ga0157369_10082518
207 Ga0157369_10320377
208 Ga0163162_10537300
209 Ga0157372_10166528
210 Ga0157372_10607543
211 Ga0157375_10320631
212 Ga0157380_10015582
213 Ga0206353_10025853
214 Ga0209566_100013
215 Ga0209674_100001
216 Ga0209672_100011
217 Ga0209147_100238
218 Ga0209563_100001
219 Ga0209563_100348
220 Ga0207427_101123
221 Ga0209437_101149
222 Ga0209258_103985
223 Ga0209677_100001
224 Ga0209677_100659
225 Ga0209148_1000023
226 Ga0209233_1000001
227 Ga0209455_1000023
228 Ga0209455_1002992
229 Ga0207688_10034187
230 Ga0207647_10017446
231 Ga0207647_10047976
232 Ga0207668_10067542
233 Ga0207683_10136500
234 Ga0307513_10141671
235 Ga0307514_10001836
236 Ga0307409_100457595
237 Ga0395900_0001084
238 Ga0395900_0064861
239 Ga0395900_0095527
240 Ga0395898_0000270
241 Ga0395901_0151483
242 Ga0466972_0034597
243 Ga0466972_0095583
244 Ga0466965_0010875
245 Ga0466965_0157395
246 Ga0466966_0028287
247 Ga0466966_0076454
248 Ga0466961_0096096
249 Ga0466963_0088425
250 Ga0466970_0032967
251 Ga0466970_0062035
252 Ga0466957_0324389
253 Ga0466960_0014589
254 Ga0466960_0096671
255 Ga0466959_0018002
256 Ga0466958_0078618
257 Ga0466967_0098281
258 Ga0495590_0000142
259 Ga0495686_0036705
260 Ga0496100_0013443
261 Ga0496102_0041310
262 Ga0496102_0284032
263 Ga0496102_0299135
264 Ga0496107_0076406
265 Ga0496113_0138918
266 Ga0496114_0099971
267 Ga0496115_0032909
268 Ga0496117_0000034
269 Ga0496117_0011299
270 Ga0496118_0004617
271 Ga0496119_0046923
272 Ga0496121_0048482
273 Ga0496121_0182674
274 Ga0496121_0319938
275 Ga0496122_0001782
276 Ga0496122_0002771
277 Ga0496123_0010789
278 Ga0496126_0001593
279 Ga0496126_0029607
280 Ga0501031_0006453
281 Ga0501031_0103555
282 Ga0501033_0000262
283 Ga0501033_0067864
284 Ga0501034_0002595
285 Ga0501034_0004069
286 Ga0501034_0010190
287 Ga0501034_0024714
288 Ga0501034_0046090
289 Ga0501034_0276350
290 Ga0501036_0004332
291 Ga0501036_0231120
292 Ga0501037_0002799
293 Ga0501037_0003591
294 Ga0501037_0059704
295 Ga0501038_0006758
296 Ga0501038_0017383
297 Ga0501038_0020618
298 Ga0501039_0025160
299 Ga0501039_0116117
300 Ga0501041_0153873
301 Ga0501042_0091750
302 Ga0501043_0007879
303 Ga0501043_0011960
304 Ga0501043_0244869
305 Ga0501046_0000410
306 Ga0501046_0001444
307 Ga0501047_0000344
308 Ga0501047_0032889
309 Ga0501047_0135725
310 Ga0501047_0160322
311 Ga0501047_0274183
312 Ga0501047_0391364
313 Ga0501048_0009737
314 Ga0501048_0011654
315 Ga0501048_0041766
316 Ga0501068_0052440
317 Ga0501070_0000098
318 Ga0501070_0025648
319 Ga0501073_0004347
320 Ga0501080_0353535
321 Ga0501035_0002127
322 Ga0501035_0024160
323 Ga0501035_0036857
324 Ga0501044_0000317
325 Ga0501044_0002444
326 Ga0501044_0058575
327 Ga0501044_0076806
328 Ga0501044_0122762
329 Ga0501045_0003703
330 Ga0501045_0051292
331 Ga0500635_0000038
332 Ga0500650_0021532
333 Ga0500556_0000041
334 Ga0500559_0000108
335 Ga0500559_0039861
336 Ga0500568_0000003
337 Ga0500573_0000011
338 Ga0500573_0005294
339 Ga0500573_0010830
340 Ga0500573_0163607
341 Ga0500573_0203426
342 Ga0500616_0000152
343 Ga0500645_003576
344 2966923098
345 2643766760
346 2644097173
347 2644113330
348 2644181378
349 2723640389
350 2844844493
351 2844854053
352 2852677439
353 2870625002
354 2884763631
355 2897562015
356 2919056450
357 2919444273
358 2919526444
359 2928155258
360 2935409927
361 2939659757
362 2939664298
363 2964327639
364 2995726676
365 8002813479
366 8046354971
367 8055037187
368 8055039403
369 8056040128
370 8057347110

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01578

Cytochrom_C_asm

Cytochrome C assembly protein

136

347

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.8418 72 310
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.691 5 322
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.6306 5 322
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.6132 72 310
7s9z-assembly1.cif.gz_A helicobacter hepaticus ccsba closed conformation 0.5391 76 314
ID Description Score Start End Superfamily
af_A0A1D6NFR3_201_388_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.5624 177 319 1.20.120.1770
5ek0C01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5608 184 307 1.20.120.350
5ek0B01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5469 189 312 1.20.120.350
5ek0D01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5357 170 308 1.20.120.350
1oedE00 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Neurotransmitter-gated ion-channel transmembrane domain 0.5324 168 321 1.20.58.390
ID Description Score Start End GO Terms
AF-A0A0K8QFF8-F1-model_v4 Cytochrome c biogenesis protein CcsA 0.9673 79 323 GO:0005886
GO:0017004
GO:0020037
AF-A0A6H9WVA5-F1-model_v4 C-type cytochrome biogenesis protein CcsB 0.9668 72 323 GO:0005886
GO:0017004
GO:0020037
AF-A0A1R4IAS0-F1-model_v4 deleted 0.9573 72 323
AF-A0A1M3ATV6-F1-model_v4 deleted 0.9561 72 323
AF-A0A3S0TNT0-F1-model_v4 deleted 0.9552 88 323

Map