F286749

General Info

Members Datasets Scaffolds Average Seq Length
186 155 372 437

Family's Representative Sequence

Representative Sequence 3300050493|nmdc:mga0k408_109382_c1|nmdc:mga0k408_109382_c1_92_1504
Length 470
Sequence MTWDDDREIVEATSNTIKKLSWIHCCMAQARYKQLVDALAAQIRAGSLPPGTRLPTHRKLAAREGLALVTASRVYAELEAMGLVSGETGRGTFVRESTLPRSLGIDQHVVASGMVDLNFNYPSLPGQAELLRAGLRQLAASSDLEALLRYQPHGGRPHERATMARHLAARGLAVSADQVMIVSGAQHGLATTAMALLQPGDVVAVDALTYPGFKVLAEAHRLELAPIPAAGHGPDLDALERLCRSRRVRAVYVMPTLHNPLGWVMSASRRRQLVSIARRHGLLLIEDAAYAFLAEDPPAPLAALAPESTVYVSGLSKSVATGLRVGFVAAPAEWVPRIERAIRATTWNTPGVMTAIACGWLEDGTVARLESEKRRDAAARQAMAGEVLAGLRCVRHPASYFVWLPLAEEVRADRLATALMRDRISVSTAEPFATSPQVPHAIRLALGSVELDALRDALEKVRRAIDGQAC

Samples

Sample ID Description Type Environment
1 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
4 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
10 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
11 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
12 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
15 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
16 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
17 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
20 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
21 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
24 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
27 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
28 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
29 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
30 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
31 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
32 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
35 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
36 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
38 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
39 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
47 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
56 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
57 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
58 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
61 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
62 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
63 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
71 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
72 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
73 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
74 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
75 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
76 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
79 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
80 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
81 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
82 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
83 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
84 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
85 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
88 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
89 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
90 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
91 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
92 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
93 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
97 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
98 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
99 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
102 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
103 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
104 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
105 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
106 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
107 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
108 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
109 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
110 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
111 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
112 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
113 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
119 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
120 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
121 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
122 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
123 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
124 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
125 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
126 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
127 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
128 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
129 2513020051 Variovorax sp. CF313 Isolate Rhizosphere
130 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
131 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
132 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
133 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
134 2643221658 Variovorax sp. Root411 Isolate Unclassified
135 2818991446 Variovorax sp. 1180 Isolate Unclassified
136 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
137 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
138 2842324504 Paraburkholderia fungorum SEMIA 4007 Isolate Nodule
139 2842348783 Paraburkholderia fungorum SEMIA 4013 Isolate Nodule
140 2842454564 Paraburkholderia fungorum SEMIA 4056 Isolate Nodule
141 2885198086 Variovorax sp. 679 Isolate Unclassified
142 2885211737 Variovorax sp. 553 Isolate Unclassified
143 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
144 2899924645 Variovorax sp. 369 Isolate Unclassified
145 2928037797 Variovorax sp. 1126 Isolate Unclassified
146 2928044640 Variovorax sp. 1128 Isolate Unclassified
147 2928051484 Variovorax sp. 1133 Isolate Unclassified
148 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
149 2928070936 Variovorax gossypii 1167 Isolate Unclassified
150 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
151 2932406140 Serratia sp. 2723 Isolate Rhizosphere
152 2939577877 Serratia sp. 509 Isolate Rhizosphere
153 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
154 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
155 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 84.95
Metatranscriptomes 0
Isolates 15.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.27
Nodule 3.76
Rhizoplane 9.68
Rhizosphere 37.1
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0k408_109382_c1 3300050493 Bacteria 1633
2 JGI24735J21928_10017865 3300002067 Bacteria 2191
3 JGI25155J39150_1000147 3300002704 Bacteria 32525
4 JGI25156J39149_1000864 3300002705 Bacteria 15097
5 JGI25154J39366_1000101 3300002738 Bacteria 76597
6 JGI25151J46595_10000933 3300003187 Bacteria 22635
7 rootL2_10001457 3300003322 Bacteria 117785
8 rootH1_10020269 3300003323 Bacteria 14185
9 Ga0055535_1000348 3300003761 Bacteria 45946
10 Ga0055542_1000021 3300003762 Bacteria 331499
11 Ga0055526_1005840 3300003771 Bacteria 6914
12 Ga0055536_1001188 3300003781 Bacteria 16194
13 Ga0055530_10001418 3300003791 Bacteria 17594
14 Ga0055540_1001053 3300003792 Bacteria 17582
15 Ga0055531_10001437 3300003794 Bacteria 17582
16 Ga0055531_10002129 3300003794 Bacteria 13580
17 Ga0065165_1009026 3300005262 Bacteria 4546
18 Ga0070669_100011344 3300005353 Bacteria 6325
19 Ga0068862_100043449 3300005844 Bacteria 3832
20 Ga0068862_100059201 3300005844 Bacteria 3289
21 Ga0075366_10020295 3300006195 Bacteria 3854
22 Ga0075370_10007698 3300006353 Bacteria 5500
23 Ga0099823_1000176 3300006944 Bacteria 35142
24 Ga0105240_10240742 3300009093 Bacteria 2097
25 Ga0105243_10031740 3300009148 Bacteria 4074
26 Ga0105237_10007864 3300009545 Bacteria 11623
27 Ga0105239_10007379 3300010375 Bacteria 12629
28 Ga0157319_1000003 3300012497 Bacteria 397199
29 Ga0157326_1001937 3300012513 Bacteria 2246
30 Ga0157379_10009921 3300014968 Bacteria 8294
31 Ga0157376_10159839 3300014969 Bacteria 2041
32 Ga0163161_10000060 3300017792 Bacteria 112916
33 Ga0209435_100069 3300025206 Bacteria 64808
34 Ga0209147_101460 3300025229 Bacteria 8495
35 Ga0209258_100058 3300025242 Bacteria 331567
36 Ga0207425_1000825 3300025245 Bacteria 15478
37 Ga0207425_1001039 3300025245 Bacteria 12899
38 Ga0209646_1000108 3300025246 Bacteria 158853
39 Ga0209148_1000071 3300025254 Bacteria 331551
40 Ga0209759_1000173 3300025256 Bacteria 107724
41 Ga0209129_1003677 3300025258 Bacteria 6520
42 Ga0209129_1004452 3300025258 Bacteria 5455
43 Ga0209565_1000423 3300025263 Bacteria 34316
44 Ga0209675_1002450 3300025291 Bacteria 9532
45 Ga0209676_1000205 3300025292 Bacteria 132469
46 Ga0209025_1000518 3300025294 Bacteria 73450
47 Ga0209025_1009785 3300025294 Bacteria 6617
48 Ga0209025_1011469 3300025294 Bacteria 5832
49 Ga0209564_1000463 3300025295 Bacteria 68043
50 Ga0209050_1000007 3300025298 Bacteria 1187891
51 Ga0209256_1000150 3300025299 Bacteria 146086
52 Ga0209256_1000344 3300025299 Bacteria 75635
53 Ga0207426_1002069 3300025302 Bacteria 13937
54 Ga0209051_1000103 3300025303 Bacteria 162029
55 Ga0209051_1000386 3300025303 Bacteria 62211
56 Ga0209257_1000011 3300025304 Bacteria 1112630
57 Ga0209257_1000318 3300025304 Bacteria 101186
58 Ga0209257_1000399 3300025304 Bacteria 85231
59 Ga0207656_10032698 3300025321 Bacteria 2162
60 Ga0207713_1015344 3300025735 Bacteria 3938
61 Ga0207671_10007666 3300025914 Bacteria 9324
62 Ga0207681_10004452 3300025923 Bacteria 8624
63 Ga0207709_10055256 3300025935 Bacteria 2452
64 Ga0268265_10016514 3300028380 Bacteria 5074
65 Ga0268265_10094848 3300028380 Bacteria 2394
66 Ga0307515_10000041 3300028794 Bacteria 319110
67 Ga0307515_10000391 3300028794 Bacteria 106353
68 Ga0307515_10147371 3300028794 Bacteria 2484
69 Ga0268256_1011645 3300030500 Bacteria 2769
70 Ga0307513_10020075 3300031456 Bacteria 7935
71 Ga0307509_10000494 3300031507 Bacteria 66714
72 Ga0307509_10004958 3300031507 Bacteria 18839
73 Ga0307408_100021097 3300031548 Bacteria 4404
74 Ga0307508_10001552 3300031616 Bacteria 25714
75 Ga0307514_10000619 3300031649 Bacteria 65719
76 Ga0307516_10000164 3300031730 Bacteria 83388
77 Ga0307516_10015942 3300031730 Bacteria 7882
78 Ga0307510_10016593 3300033180 Bacteria 8691
79 Ga0395899_0001096 3300037312 Bacteria 24291
80 Ga0395899_0018928 3300037312 Bacteria 5232
81 Ga0395900_0003214 3300037418 Bacteria 17689
82 Ga0395898_0014446 3300037466 Bacteria 8109
83 Ga0395905_0006695 3300037471 Bacteria 11544
84 Ga0395901_0001226 3300038443 Bacteria 27345
85 Ga0436361_0063616 3300039447 Bacteria 2780
86 Ga0436361_0336038 3300039447 Bacteria 1685
87 Ga0466972_0034982 3300044658 Bacteria 2459
88 Ga0466966_0006666 3300044684 Bacteria 7646
89 Ga0466961_0027736 3300044693 Bacteria 3643
90 Ga0495603_0007015 3300046455 Bacteria 6762
91 Ga0495590_0026675 3300046457 Bacteria 2027
92 Ga0495629_0002547 3300046459 Bacteria 13971
93 Ga0495650_0000768 3300046471 Bacteria 39676
94 Ga0495606_0036483 3300046507 Bacteria 3347
95 Ga0495606_0050450 3300046507 Bacteria 2722
96 Ga0495630_0030625 3300046517 Bacteria 4004
97 Ga0495632_0011146 3300046519 Bacteria 5266
98 Ga0495637_0010311 3300046520 Bacteria 4526
99 Ga0495642_0002766 3300046528 Bacteria 7034
100 Ga0495654_0002204 3300046530 Bacteria 12634
101 Ga0495645_0000847 3300046543 Bacteria 20820
102 Ga0495622_0042159 3300046557 Bacteria 2122
103 Ga0495667_0081872 3300046559 Bacteria 2098
104 Ga0495625_0089053 3300046660 Bacteria 2137
105 Ga0495588_0041785 3300046674 Bacteria 2342
106 Ga0495671_0028139 3300046692 Bacteria 2898
107 Ga0495649_0026960 3300046694 Bacteria 3190
108 Ga0495683_0001589 3300047323 Bacteria 14641
109 Ga0495683_0088831 3300047323 Bacteria 1500
110 Ga0495687_009263 3300047443 Bacteria 5528
111 Ga0495686_0002086 3300047472 Bacteria 19656
112 Ga0495626_0019215 3300048091 Bacteria 3418
113 Ga0496101_0000011 3300048904 Bacteria 272153
114 Ga0496101_0004569 3300048904 Bacteria 8739
115 Ga0496102_0001784 3300048905 Bacteria 18672
116 Ga0496102_0115147 3300048905 Bacteria 2509
117 Ga0496103_0011707 3300048906 Bacteria 5203
118 Ga0496105_0043578 3300048908 Bacteria 3701
119 Ga0496106_0000211 3300048909 Bacteria 40794
120 Ga0496106_0008040 3300048909 Bacteria 7791
121 Ga0496106_0030786 3300048909 Bacteria 3999
122 Ga0496107_0012917 3300048910 Bacteria 5836
123 Ga0496107_0129500 3300048910 Bacteria 1862
124 Ga0496110_0011498 3300048913 Bacteria 7246
125 Ga0496111_0001717 3300048914 Bacteria 12808
126 Ga0496113_0069253 3300048916 Bacteria 2679
127 Ga0496115_0166776 3300048918 Bacteria 1821
128 Ga0496117_0004587 3300048920 Bacteria 15111
129 Ga0496117_0025186 3300048920 Bacteria 4683
130 Ga0496118_0008433 3300048921 Bacteria 10656
131 Ga0496118_0097802 3300048921 Bacteria 1995
132 Ga0496119_0000181 3300048922 Bacteria 88025
133 Ga0496119_0028588 3300048922 Bacteria 3800
134 Ga0496119_0063800 3300048922 Bacteria 2190
135 Ga0496120_0000121 3300048923 Bacteria 131612
136 Ga0496121_0000250 3300048924 Bacteria 114145
137 Ga0496121_0042661 3300048924 Bacteria 3941
138 Ga0496122_0025917 3300048925 Bacteria 5075
139 Ga0496124_0024757 3300048927 Bacteria 5450
140 Ga0496125_0031724 3300048928 Bacteria 4704
141 Ga0496126_0000038 3300048929 Bacteria 347738
142 Ga0496126_0000065 3300048929 Bacteria 252549
143 Ga0496126_0000317 3300048929 Bacteria 102866
144 Ga0501043_0000059 3300049579 Bacteria 101444
145 Ga0501046_0000082 3300049580 Bacteria 101313
146 Ga0501047_0000050 3300049581 Bacteria 155628
147 Ga0501048_0000880 3300049582 Bacteria 22175
148 Ga0501044_0160398 3300049823 Bacteria 2226
149 nmdc:mga06z11_100010_c1 3300050494 Bacteria 1589
150 Ga0500610_0000288 3300053079 Bacteria 15151
151 Ga0500643_008015 3300053087 Bacteria 4189
152 Ga0500562_004939 3300053108 Bacteria 3362
153 Ga0500593_018043 3300053117 Bacteria 3072
154 Ga0500607_038064 3300053121 Bacteria 2618
155 Ga0500586_041713 3300053145 Bacteria 1559
156 Ga0500627_0007664 3300053158 Bacteria 3779
157 Ga0500634_0025342 3300053161 Bacteria 3229
158 Ga0500645_010036 3300053730 Bacteria 3154
159 2511244271 2511231002 Bacteria 5042903
160 2513228624 2513020051 Bacteria 6053213
161 2599627132 2599185214 Bacteria 8209958
162 2599677426 2599185226 Bacteria 8233575
163 2599684565 2599185227 Bacteria 8246414
164 2599696789 2599185229 Bacteria 8216126
165 2644327759 2643221658 Bacteria 6064537
166 2819597384 2818991446 Bacteria 7757362
167 2831266480 2831265667 Bacteria 7184833
168 2838057398 2838054893 Bacteria 7451788
169 2842327244 2842324504 Bacteria 9364110
170 2842352149 2842348783 Bacteria 9002918
171 2842458388 2842454564 Bacteria 8730687
172 2885204647 2885198086 Bacteria 7212419
173 2885218300 2885211737 Bacteria 7212420
174 2894024667 2894023352 Bacteria 5167372
175 2899924892 2899924645 Bacteria 7487985
176 2928038984 2928037797 Bacteria 7273642
177 2928045411 2928044640 Bacteria 7271509
178 2928058308 2928051484 Bacteria 7773759
179 2928064111 2928064002 Bacteria 7419480
180 2928071511 2928070936 Bacteria 8062541
181 2928084511 2928084124 Bacteria 7159212
182 2932407985 2932406140 Bacteria 5134491
183 2939578442 2939577877 Bacteria 5132791
184 2945912800 2945909444 Bacteria 7065066
185 2945984933 2945984333 Bacteria 7358892
186 8055307039 8055301274 Bacteria 8587385
187 nmdc:mga0k408_109382_c1
188 JGI24735J21928_10017865
189 JGI25155J39150_1000147
190 JGI25156J39149_1000864
191 JGI25154J39366_1000101
192 JGI25151J46595_10000933
193 rootL2_10001457
194 rootH1_10020269
195 Ga0055535_1000348
196 Ga0055542_1000021
197 Ga0055526_1005840
198 Ga0055536_1001188
199 Ga0055530_10001418
200 Ga0055540_1001053
201 Ga0055531_10001437
202 Ga0055531_10002129
203 Ga0065165_1009026
204 Ga0070669_100011344
205 Ga0068862_100043449
206 Ga0068862_100059201
207 Ga0075366_10020295
208 Ga0075370_10007698
209 Ga0099823_1000176
210 Ga0105240_10240742
211 Ga0105243_10031740
212 Ga0105237_10007864
213 Ga0105239_10007379
214 Ga0157319_1000003
215 Ga0157326_1001937
216 Ga0157379_10009921
217 Ga0157376_10159839
218 Ga0163161_10000060
219 Ga0209435_100069
220 Ga0209147_101460
221 Ga0209258_100058
222 Ga0207425_1000825
223 Ga0207425_1001039
224 Ga0209646_1000108
225 Ga0209148_1000071
226 Ga0209759_1000173
227 Ga0209129_1003677
228 Ga0209129_1004452
229 Ga0209565_1000423
230 Ga0209675_1002450
231 Ga0209676_1000205
232 Ga0209025_1000518
233 Ga0209025_1009785
234 Ga0209025_1011469
235 Ga0209564_1000463
236 Ga0209050_1000007
237 Ga0209256_1000150
238 Ga0209256_1000344
239 Ga0207426_1002069
240 Ga0209051_1000103
241 Ga0209051_1000386
242 Ga0209257_1000011
243 Ga0209257_1000318
244 Ga0209257_1000399
245 Ga0207656_10032698
246 Ga0207713_1015344
247 Ga0207671_10007666
248 Ga0207681_10004452
249 Ga0207709_10055256
250 Ga0268265_10016514
251 Ga0268265_10094848
252 Ga0307515_10000041
253 Ga0307515_10000391
254 Ga0307515_10147371
255 Ga0268256_1011645
256 Ga0307513_10020075
257 Ga0307509_10000494
258 Ga0307509_10004958
259 Ga0307408_100021097
260 Ga0307508_10001552
261 Ga0307514_10000619
262 Ga0307516_10000164
263 Ga0307516_10015942
264 Ga0307510_10016593
265 Ga0395899_0001096
266 Ga0395899_0018928
267 Ga0395900_0003214
268 Ga0395898_0014446
269 Ga0395905_0006695
270 Ga0395901_0001226
271 Ga0436361_0063616
272 Ga0436361_0336038
273 Ga0466972_0034982
274 Ga0466966_0006666
275 Ga0466961_0027736
276 Ga0495603_0007015
277 Ga0495590_0026675
278 Ga0495629_0002547
279 Ga0495650_0000768
280 Ga0495606_0036483
281 Ga0495606_0050450
282 Ga0495630_0030625
283 Ga0495632_0011146
284 Ga0495637_0010311
285 Ga0495642_0002766
286 Ga0495654_0002204
287 Ga0495645_0000847
288 Ga0495622_0042159
289 Ga0495667_0081872
290 Ga0495625_0089053
291 Ga0495588_0041785
292 Ga0495671_0028139
293 Ga0495649_0026960
294 Ga0495683_0001589
295 Ga0495683_0088831
296 Ga0495687_009263
297 Ga0495686_0002086
298 Ga0495626_0019215
299 Ga0496101_0000011
300 Ga0496101_0004569
301 Ga0496102_0001784
302 Ga0496102_0115147
303 Ga0496103_0011707
304 Ga0496105_0043578
305 Ga0496106_0000211
306 Ga0496106_0008040
307 Ga0496106_0030786
308 Ga0496107_0012917
309 Ga0496107_0129500
310 Ga0496110_0011498
311 Ga0496111_0001717
312 Ga0496113_0069253
313 Ga0496115_0166776
314 Ga0496117_0004587
315 Ga0496117_0025186
316 Ga0496118_0008433
317 Ga0496118_0097802
318 Ga0496119_0000181
319 Ga0496119_0028588
320 Ga0496119_0063800
321 Ga0496120_0000121
322 Ga0496121_0000250
323 Ga0496121_0042661
324 Ga0496122_0025917
325 Ga0496124_0024757
326 Ga0496125_0031724
327 Ga0496126_0000038
328 Ga0496126_0000065
329 Ga0496126_0000317
330 Ga0501043_0000059
331 Ga0501046_0000082
332 Ga0501047_0000050
333 Ga0501048_0000880
334 Ga0501044_0160398
335 nmdc:mga06z11_100010_c1
336 Ga0500610_0000288
337 Ga0500643_008015
338 Ga0500562_004939
339 Ga0500593_018043
340 Ga0500607_038064
341 Ga0500586_041713
342 Ga0500627_0007664
343 Ga0500634_0025342
344 Ga0500645_010036
345 2511244271
346 2513228624
347 2599627132
348 2599677426
349 2599684565
350 2599696789
351 2644327759
352 2819597384
353 2831266480
354 2838057398
355 2842327244
356 2842352149
357 2842458388
358 2885204647
359 2885218300
360 2894024667
361 2899924892
362 2928038984
363 2928045411
364 2928058308
365 2928064111
366 2928071511
367 2928084511
368 2932407985
369 2939578442
370 2945912800
371 2945984933
372 8055307039

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

31

94

0.99

PF00155

Aminotran_1_2

Aminotransferase class I and II

112

461

0.9

PF12897

Asp_aminotransf

Aspartate amino-transferase

171

466

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
5d4r-assembly1.cif.gz_A crystal structure of arar(dbd) in complex with operator ore1 0.9234 5 68
5d4s-assembly1.cif.gz_B crystal structure of arar(dbd) in complex with operator orx1 0.9226 5 68
2zc0-assembly1.cif.gz_A crystal structure of an archaeal alanine:glyoxylate aminotransferase 0.9185 88 441
4h0e-assembly1.cif.gz_A crystal structure of mutant orr3 in complex with ntd of arar 0.9173 5 68
4wwc-assembly1.cif.gz_B crystal structure of full length yvoa in complex with palindromic operator dna 0.9118 6 73
ID Description Score Start End Superfamily
af_Q2G1P1_1_44_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9368 26 69 1.10.10.10
af_P9WMG5_6_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9325 4 69 1.10.10.10
3by6D01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9264 6 69 1.10.10.10
af_P39389_1_70_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9258 4 72 1.10.10.10
2zc0A02 Alpha Beta;3-Layer(aba) Sandwich;Aspartate Aminotransferase; domain 2;Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.9256 124 338 3.40.640.10
ID Description Score Start End GO Terms
AF-A0A7Y8B4Z9-F1-model_v4 deleted 0.9844 337 441
AF-W1IRV4-F1-model_v4 Aminotransferase class I/classII large domain-containing protein 0.9697 257 441 GO:0009058
GO:0030170
AF-A0A2X3CKU4-F1-model_v4 GntR family transcriptional regulator domain / Aspartate aminotransferase 0.9667 303 437 GO:0008483
AF-A0A840AQF7-F1-model_v4 DNA-binding transcriptional MocR family regulator 0.9638 133 440 GO:0003677
GO:0009058
GO:0030170
AF-A0A519GMX3-F1-model_v4 PLP-dependent aminotransferase family protein 0.9629 172 440 GO:0008483
GO:0009058
GO:0030170

Map