F287356

General Info

Members Datasets Scaffolds Average Seq Length
187 139 186 373

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100135174|Ga0068855_1001351742
Length 446
Sequence MLNAVAAAAAFVPTSPASHAXRAGSDPGSTSGTARGRAEPAPAARGGAPDEVRAARAAGLRHVSDTRTPGLTRRPTGKRVRQGRRWVPVFDIFDARGRPVRDEATLERVRRLAIPPAWTDVWICPDPRGHLQATGRDARRRKQYRYHPRWREERDSTKYERMIDFGRAWPRLRRAVAADLNLPGLPRRKVLATVVRLLDTTFIRVGNEEYERANRSFGLTTLKDRHVEIGRGRVRFHFRGKSGVFHDISVHDPTVAGIVRRCRDLPGQELFQYLDDNGQPASLGSSDVNDYIHEVAGHDFTAKDIRTWAGTVLAAAALHTLGVGGAAAREGARRQGGAPAGHGRASNRDVTRAIEQVAERLGNTAAVCRKCYVHPHVVASFLDGTLGDAFAHLGRAPKGTTGLHPDERAVLALLRRRAAAEKTGTLLEGQLRRSLRARRPPARRRS

Samples

Sample ID Description Type Environment
1 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
41 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
42 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
43 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
44 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
48 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
64 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
65 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
93 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
94 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
95 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
96 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
97 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
98 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
99 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
100 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
101 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
102 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
103 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
104 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
105 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
106 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
107 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
108 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
109 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
110 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
111 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
112 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
113 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
114 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
115 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
116 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
117 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
118 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
120 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
121 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
124 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
125 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
127 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
128 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
129 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
130 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
131 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
132 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
133 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
134 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
135 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
136 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
137 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
138 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
139 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.93
Metatranscriptomes 0.53
Isolates 0.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.56
Nodule 0
Rhizoplane 1.07
Rhizosphere 86.63
Stem 0
Stem Tuber 0
Unclassified 3.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10154567 3300003320 Bacteria 8794
2 rootL2_10053045 3300003322 Bacteria 6060
3 rootL2_10088547 3300003322 Bacteria 2987
4 JGI25405J52794_10002651 3300003911 Bacteria 3095
5 Ga0058860_10803976 3300004801 Bacteria 1282
6 Ga0070658_10000789 3300005327 Bacteria 27151
7 Ga0070658_10001179 3300005327 Bacteria 22354
8 Ga0070658_10100412 3300005327 Bacteria 2392
9 Ga0070658_10172386 3300005327 Bacteria 1818
10 Ga0070683_100001444 3300005329 Bacteria 18259
11 Ga0070690_100050730 3300005330 Bacteria 2647
12 Ga0070680_100071145 3300005336 Bacteria 2858
13 Ga0070689_100000008 3300005340 Bacteria 250116
14 Ga0070668_100048133 3300005347 Bacteria 3279
15 Ga0070674_100006543 3300005356 Bacteria 6808
16 Ga0070673_100120062 3300005364 Bacteria 2191
17 Ga0070667_100058463 3300005367 Bacteria 3260
18 Ga0070714_100137110 3300005435 Bacteria 2192
19 Ga0070694_100010753 3300005444 Bacteria 5660
20 Ga0070694_100060908 3300005444 Bacteria 2575
21 Ga0070708_100002883 3300005445 Bacteria 13353
22 Ga0070708_100216961 3300005445 Bacteria 1793
23 Ga0070662_100045752 3300005457 Unclassified 3141
24 Ga0070681_10033326 3300005458 Bacteria 5171
25 Ga0070706_100018477 3300005467 Bacteria 6428
26 Ga0070699_100066893 3300005518 Bacteria 3120
27 Ga0070699_100080542 3300005518 Bacteria 2838
28 Ga0070699_100084406 3300005518 Bacteria 2771
29 Ga0070679_100040364 3300005530 Bacteria 4643
30 Ga0070679_100041168 3300005530 Bacteria 4598
31 Ga0070679_100241342 3300005530 Bacteria 1764
32 Ga0070684_100000567 3300005535 Bacteria 25497
33 Ga0070684_100031350 3300005535 Bacteria 4525
34 Ga0070697_100064237 3300005536 Bacteria 2998
35 Ga0068853_100007084 3300005539 Bacteria 8970
36 Ga0068853_100224336 3300005539 Bacteria 1717
37 Ga0070672_100110518 3300005543 Unclassified 2239
38 Ga0070686_100004733 3300005544 Bacteria 7505
39 Ga0070665_100051804 3300005548 Bacteria 4116
40 Ga0070665_100103633 3300005548 Unclassified 2848
41 Ga0070704_100018563 3300005549 Bacteria 4450
42 Ga0070704_100173280 3300005549 Bacteria 1718
43 Ga0068855_100010751 3300005563 Bacteria 11047
44 Ga0068855_100135174 3300005563 Bacteria 2813
45 Ga0068855_100311450 3300005563 Bacteria 1741
46 Ga0068856_100043219 3300005614 Bacteria 4434
47 Ga0068856_100076988 3300005614 Bacteria 3305
48 Ga0068856_100195885 3300005614 Bacteria 2034
49 Ga0068852_100041283 3300005616 Bacteria 3898
50 Ga0068861_100175238 3300005719 Bacteria 1781
51 Ga0068863_100015987 3300005841 Bacteria 7198
52 Ga0068863_100060994 3300005841 Bacteria 3566
53 Ga0068860_100128050 3300005843 Unclassified 2434
54 Ga0068862_100000571 3300005844 Bacteria 38369
55 Ga0068862_100093792 3300005844 Bacteria 2618
56 Ga0081455_10003007 3300005937 Bacteria 19674
57 Ga0081455_10057819 3300005937 Bacteria 3285
58 Ga0081539_10009769 3300005985 Bacteria 7936
59 Ga0075365_10121721 3300006038 Unclassified 1800
60 Ga0075368_10001103 3300006042 Bacteria 8504
61 Ga0075363_100001119 3300006048 Bacteria 9746
62 Ga0075364_10002518 3300006051 Bacteria 10265
63 Ga0075367_10003753 3300006178 Bacteria 7314
64 Ga0097621_100041493 3300006237 Bacteria 3704
65 Ga0068871_100151650 3300006358 Bacteria 1977
66 Ga0075434_100011531 3300006871 Bacteria 8339
67 Ga0068865_100057175 3300006881 Bacteria 2720
68 Ga0075436_100114504 3300006914 Bacteria 1883
69 Ga0075435_100023140 3300007076 Bacteria 4800
70 Ga0105240_10007962 3300009093 Bacteria 15283
71 Ga0105240_10025733 3300009093 Bacteria 7730
72 Ga0105247_10074154 3300009101 Bacteria 2133
73 Ga0105241_10334328 3300009174 Bacteria 1310
74 Ga0105242_10023669 3300009176 Bacteria 4842
75 Ga0105237_10004995 3300009545 Bacteria 15109
76 Ga0105238_10027581 3300009551 Bacteria 5788
77 Ga0105238_10156615 3300009551 Bacteria 2253
78 Ga0105239_10000211 3300010375 Bacteria 85890
79 Ga0105239_10015520 3300010375 Bacteria 8435
80 Ga0105239_10217734 3300010375 Bacteria 2141
81 Ga0105246_10019234 3300011119 Bacteria 4361
82 Ga0157371_10002290 3300013102 Bacteria 18458
83 Ga0157370_10229210 3300013104 Bacteria 1720
84 Ga0163162_10051135 3300013306 Bacteria 4145
85 Ga0163162_10055363 3300013306 Bacteria 3993
86 Ga0157372_10102913 3300013307 Bacteria 3262
87 Ga0157372_10112562 3300013307 Bacteria 3118
88 Ga0157372_10151648 3300013307 Bacteria 2675
89 Ga0157375_10064921 3300013308 Bacteria 3636
90 Ga0157380_10276800 3300014326 Bacteria 1533
91 Ga0157376_10141361 3300014969 Bacteria 2160
92 Ga0157376_10243103 3300014969 Bacteria 1678
93 Ga0207688_10010181 3300025901 Bacteria 5117
94 Ga0207688_10118003 3300025901 Bacteria 1546
95 Ga0207645_10026059 3300025907 Unclassified 3780
96 Ga0207643_10053744 3300025908 Unclassified 2288
97 Ga0207705_10065384 3300025909 Bacteria 2629
98 Ga0207684_10015706 3300025910 Bacteria 6515
99 Ga0207707_10110482 3300025912 Bacteria 2403
100 Ga0207695_10000164 3300025913 Bacteria 196777
101 Ga0207695_10001125 3300025913 Bacteria 46438
102 Ga0207695_10026860 3300025913 Bacteria 6419
103 Ga0207671_10000434 3300025914 Bacteria 57541
104 Ga0207660_10069608 3300025917 Bacteria 2556
105 Ga0207652_10005149 3300025921 Bacteria 10607
106 Ga0207652_10007405 3300025921 Bacteria 8851
107 Ga0207652_10239888 3300025921 Bacteria 1634
108 Ga0207681_10196961 3300025923 Unclassified 1545
109 Ga0207694_10009979 3300025924 Bacteria 7159
110 Ga0207694_10105742 3300025924 Bacteria 2235
111 Ga0207650_10034896 3300025925 Bacteria 3650
112 Ga0207650_10120817 3300025925 Bacteria 2039
113 Ga0207706_10027620 3300025933 Bacteria 5073
114 Ga0207670_10000008 3300025936 Bacteria 303208
115 Ga0207691_10031320 3300025940 Bacteria 4965
116 Ga0207689_10001626 3300025942 Bacteria 21283
117 Ga0207689_10028551 3300025942 Bacteria 4667
118 Ga0207661_10307643 3300025944 Bacteria 1422
119 Ga0207667_10141200 3300025949 Bacteria 2480
120 Ga0207651_10040949 3300025960 Bacteria 3071
121 Ga0207703_10300662 3300026035 Bacteria 1463
122 Ga0207639_10001730 3300026041 Bacteria 14701
123 Ga0207639_10172440 3300026041 Bacteria 1833
124 Ga0207702_10091507 3300026078 Bacteria 2663
125 Ga0207702_10096752 3300026078 Bacteria 2597
126 Ga0207641_10322821 3300026088 Bacteria 1464
127 Ga0207675_100223548 3300026118 Bacteria 1814
128 Ga0207683_10002383 3300026121 Bacteria 16423
129 Ga0268265_10006471 3300028380 Bacteria 7938
130 Ga0265319_1045291 3300028563 Bacteria 1471
131 Ga0265338_10191126 3300028800 Bacteria 1552
132 Ga0265339_10053949 3300031249 Bacteria 2185
133 Ga0307508_10001107 3300031616 Bacteria 31214
134 Ga0265342_10000097 3300031712 Bacteria 96401
135 Ga0307409_100011470 3300031995 Bacteria 5592
136 Ga0307416_100026147 3300032002 Bacteria 4295
137 Ga0307415_100161752 3300032126 Bacteria 1736
138 Ga0373957_0034047 3300035120 Bacteria 1884
139 Ga0373937_0191032 3300036401 Bacteria 1924
140 Ga0395900_0050290 3300037418 Bacteria 4294
141 Ga0395900_0056336 3300037418 Bacteria 4046
142 Ga0395900_0332621 3300037418 Bacteria 1497
143 Ga0395898_0104962 3300037466 Bacteria 2710
144 Ga0395905_0000424 3300037471 Bacteria 58940
145 Ga0395905_0027506 3300037471 Bacteria 5363
146 Ga0395901_0031172 3300038443 Bacteria 5497
147 Ga0436365_0316489 3300039437 Bacteria 3859
148 Ga0439449_0001718 3300042007 Bacteria 8601
149 Ga0451577_0118812 3300042876 Bacteria 2368
150 Ga0466969_0008832 3300044656 Bacteria 5343
151 Ga0466966_0006280 3300044684 Bacteria 7862
152 Ga0466961_0025821 3300044693 Bacteria 3776
153 Ga0466970_0067991 3300044765 Bacteria 1914
154 Ga0466970_0101980 3300044765 Bacteria 1563
155 Ga0466959_0028247 3300045049 Bacteria 4159
156 Ga0495638_0094694 3300046460 Bacteria 1795
157 Ga0495651_0245442 3300046462 Bacteria 1226
158 Ga0495613_0140500 3300046689 Bacteria 1726
159 Ga0496112_0041827 3300048915 Bacteria 4484
160 Ga0496112_0270762 3300048915 Bacteria 1647
161 Ga0501046_0046587 3300049580 Bacteria 3441
162 Ga0501067_0003836 3300049583 Bacteria 8299
163 Ga0501067_0026658 3300049583 Bacteria 3200
164 Ga0501069_0002842 3300049585 Bacteria 8862
165 Ga0501072_0191666 3300049588 Bacteria 1630
166 Ga0501073_0001549 3300049589 Bacteria 17037
167 Ga0501073_0019981 3300049589 Bacteria 4830
168 Ga0501074_0002148 3300049590 Bacteria 13639
169 Ga0501235_002568 3300049669 Bacteria 3907
170 Ga0501044_0027378 3300049823 Bacteria 6026
171 nmdc:mga03n38_20585_c1 3300050490 Bacteria 2642
172 nmdc:mga00v17_7739_c1 3300050491 Bacteria 5756
173 nmdc:mga0yw44_14418_c1 3300050492 Bacteria 4197
174 nmdc:mga06z11_6433_c1 3300050494 Bacteria 4780
175 nmdc:mga0rr50_11027_c1 3300050513 Bacteria 5763
176 nmdc:mga08x19_24559_c1 3300050514 Bacteria 3748
177 nmdc:mga08x19_63593_c1 3300050514 Bacteria 2394
178 Ga0500641_0001454 3300053096 Bacteria 8437
179 Ga0500555_002089 3300053103 Bacteria 5864
180 Ga0500559_0016253 3300053136 Bacteria 3143
181 Ga0500568_0011036 3300053139 Bacteria 4208
182 Ga0500616_0003055 3300053153 Bacteria 13167
183 Ga0500616_0050964 3300053153 Bacteria 2183
184 Ga0500645_002623 3300053730 Bacteria 7872
185 Ga0501084_0000960 3300054114 Bacteria 22322
186 Ga0501082_0021098 3300060353 Bacteria 5617

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005445 Ga0070708_100002883 Ga0070708_1000028839 321
2 3300053096 Ga0500641_0001454 Ga0500641_0001454_6881_7891 332
3 3300053153 Ga0500616_0050964 Ga0500616_0050964_589_1599 332
4 3300053730 Ga0500645_002623 Ga0500645_002623_768_1778 332
5 3300037471 Ga0395905_0027506 Ga0395905_0027506_2347_3477 334
6 3300053139 Ga0500568_0011036 Ga0500568_0011036_985_1992 334
7 3300009551 Ga0105238_10027581 Ga0105238_100275814 335
8 3300042876 Ga0451577_0118812 Ga0451577_0118812_1029_2204 336
9 3300054114 Ga0501084_0000960 Ga0501084_0000960_3899_4957 339
10 3300035120 Ga0373957_0034047 Ga0373957_0034047_459_1646 340
11 3300005444 Ga0070694_100010753 Ga0070694_1000107534 345
12 3300005518 Ga0070699_100080542 Ga0070699_1000805423 345
13 3300005549 Ga0070704_100173280 Ga0070704_1001732802 345
14 3300005614 Ga0068856_100195885 Ga0068856_1001958852 345
15 3300006914 Ga0075436_100114504 Ga0075436_1001145041 345
16 3300014326 Ga0157380_10276800 Ga0157380_102768001 345
17 3300026078 Ga0207702_10096752 Ga0207702_100967522 345
18 3300049580 Ga0501046_0046587 Ga0501046_0046587_2331_3431 345
19 3300049583 Ga0501067_0026658 Ga0501067_0026658_2034_3134 345
20 3300050514 nmdc:mga08x19_63593_c1 nmdc:mga08x19_63593_c1_1169_2263 345
21 3300060353 Ga0501082_0021098 Ga0501082_0021098_41_1141 345
22 3300009093 Ga0105240_10007962 Ga0105240_100079628 347
23 3300013104 Ga0157370_10229210 Ga0157370_102292101 347
24 3300025901 Ga0207688_10118003 Ga0207688_101180031 348
25 3300053153 Ga0500616_0003055 Ga0500616_0003055_9671_10783 349
26 3300005435 Ga0070714_100137110 Ga0070714_1001371103 350
27 3300005458 Ga0070681_10033326 Ga0070681_100333266 350
28 3300025912 Ga0207707_10110482 Ga0207707_101104822 350
29 3300005563 Ga0068855_100010751 Ga0068855_1000107516 351
30 3300005614 Ga0068856_100043219 Ga0068856_1000432195 351
31 3300005530 Ga0070679_100041168 Ga0070679_1000411682 352
32 3300005844 Ga0068862_100000571 Ga0068862_1000005715 352
33 3300028380 Ga0268265_10006471 Ga0268265_100064714 352
34 3300037418 Ga0395900_0332621 Ga0395900_0332621_55_1191 352
35 3300005444 Ga0070694_100060908 Ga0070694_1000609083 353
36 3300005544 Ga0070686_100004733 Ga0070686_1000047335 353
37 3300005549 Ga0070704_100018563 Ga0070704_1000185633 353
38 3300005841 Ga0068863_100015987 Ga0068863_1000159876 353
39 3300026088 Ga0207641_10322821 Ga0207641_103228212 353
40 3300031712 Ga0265342_10000097 Ga0265342_1000009723 353
41 3300048915 Ga0496112_0270762 Ga0496112_0270762_350_1474 353
42 3300005356 Ga0070674_100006543 Ga0070674_1000065435 354
43 3300005364 Ga0070673_100120062 Ga0070673_1001200622 354
44 3300005367 Ga0070667_100058463 Ga0070667_1000584632 354
45 3300005457 Ga0070662_100045752 Ga0070662_1000457524 354
46 3300005543 Ga0070672_100110518 Ga0070672_1001105181 354
47 3300005548 Ga0070665_100051804 Ga0070665_1000518045 354
48 3300005843 Ga0068860_100128050 Ga0068860_1001280502 354
49 3300005844 Ga0068862_100093792 Ga0068862_1000937922 354
50 3300006042 Ga0075368_10001103 Ga0075368_100011037 354
51 3300006048 Ga0075363_100001119 Ga0075363_1000011198 354
52 3300006051 Ga0075364_10002518 Ga0075364_100025188 354
53 3300006178 Ga0075367_10003753 Ga0075367_100037536 354
54 3300006881 Ga0068865_100057175 Ga0068865_1000571752 354
55 3300011119 Ga0105246_10019234 Ga0105246_100192343 354
56 3300014969 Ga0157376_10141361 Ga0157376_101413612 354
57 3300025901 Ga0207688_10010181 Ga0207688_100101812 354
58 3300025907 Ga0207645_10026059 Ga0207645_100260593 354
59 3300025908 Ga0207643_10053744 Ga0207643_100537441 354
60 3300025923 Ga0207681_10196961 Ga0207681_101969612 354
61 3300025925 Ga0207650_10034896 Ga0207650_100348965 354
62 3300025933 Ga0207706_10027620 Ga0207706_100276202 354
63 3300025940 Ga0207691_10031320 Ga0207691_100313205 354
64 3300025942 Ga0207689_10001626 Ga0207689_1000162610 354
65 3300025960 Ga0207651_10040949 Ga0207651_100409491 354
66 3300026041 Ga0207639_10172440 Ga0207639_101724402 354
67 3300026121 Ga0207683_10002383 Ga0207683_100023833 354
68 3300031995 Ga0307409_100011470 Ga0307409_1000114706 354
69 3300050490 nmdc:mga03n38_20585_c1 nmdc:mga03n38_20585_c1_1175_2281 354
70 3300050491 nmdc:mga00v17_7739_c1 nmdc:mga00v17_7739_c1_3080_4186 354
71 3300050492 nmdc:mga0yw44_14418_c1 nmdc:mga0yw44_14418_c1_703_1809 354
72 3300050494 nmdc:mga06z11_6433_c1 nmdc:mga06z11_6433_c1_2081_3187 354
73 3300005327 Ga0070658_10172386 Ga0070658_101723863 355
74 3300005347 Ga0070668_100048133 Ga0070668_1000481333 355
75 3300005719 Ga0068861_100175238 Ga0068861_1001752382 355
76 3300009101 Ga0105247_10074154 Ga0105247_100741542 355
77 3300010375 Ga0105239_10000211 Ga0105239_1000021139 355
78 3300025913 Ga0207695_10000164 Ga0207695_1000016433 355
79 3300025942 Ga0207689_10028551 Ga0207689_100285514 355
80 3300026035 Ga0207703_10300662 Ga0207703_103006622 355
81 3300026118 Ga0207675_100223548 Ga0207675_1002235482 355
82 3300031616 Ga0307508_10001107 Ga0307508_1000110711 355
83 3300044656 Ga0466969_0008832 Ga0466969_0008832_1918_3066 355
84 3300044693 Ga0466961_0025821 Ga0466961_0025821_136_1284 355
85 3300044765 Ga0466970_0067991 Ga0466970_0067991_449_1594 355
86 3300045049 Ga0466959_0028247 Ga0466959_0028247_401_1549 355
87 3300003322 rootL2_10088547 rootL2_100885472 356
88 3300005539 Ga0068853_100224336 Ga0068853_1002243362 356
89 3300009093 Ga0105240_10025733 Ga0105240_100257334 356
90 3300009551 Ga0105238_10156615 Ga0105238_101566151 356
91 3300010375 Ga0105239_10015520 Ga0105239_100155208 356
92 3300025913 Ga0207695_10026860 Ga0207695_100268601 356
93 3300025924 Ga0207694_10105742 Ga0207694_101057421 356
94 3300031249 Ga0265339_10053949 Ga0265339_100539492 356
95 3300037418 Ga0395900_0056336 Ga0395900_0056336_150_1244 356
96 3300037466 Ga0395898_0104962 Ga0395898_0104962_271_1365 356
97 3300005327 Ga0070658_10100412 Ga0070658_101004122 357
98 3300005330 Ga0070690_100050730 Ga0070690_1000507301 357
99 3300025909 Ga0207705_10065384 Ga0207705_100653842 357
100 3300028800 Ga0265338_10191126 Ga0265338_101911262 357
101 3300044684 Ga0466966_0006280 Ga0466966_0006280_4798_5961 357
102 3300044765 Ga0466970_0101980 Ga0466970_0101980_306_1469 357
103 3300049585 Ga0501069_0002842 Ga0501069_0002842_3294_4463 357
104 3300049588 Ga0501072_0191666 Ga0501072_0191666_64_1233 357
105 3300049589 Ga0501073_0001549 Ga0501073_0001549_12625_13794 357
106 3300049590 Ga0501074_0002148 Ga0501074_0002148_4349_5518 357
107 3300049823 Ga0501044_0027378 Ga0501044_0027378_4791_5960 357
108 3300005445 Ga0070708_100216961 Ga0070708_1002169612 358
109 3300005518 Ga0070699_100066893 Ga0070699_1000668931 358
110 3300009176 Ga0105242_10023669 Ga0105242_100236695 358
111 3300005327 Ga0070658_10001179 Ga0070658_100011795 359
112 3300005518 Ga0070699_100084406 Ga0070699_1000844063 359
113 3300005530 Ga0070679_100241342 Ga0070679_1002413421 359
114 3300006237 Ga0097621_100041493 Ga0097621_1000414932 359
115 3300006358 Ga0068871_100151650 Ga0068871_1001516502 359
116 3300013306 Ga0163162_10051135 Ga0163162_100511355 359
117 3300013306 Ga0163162_10055363 Ga0163162_100553633 359
118 3300013308 Ga0157375_10064921 Ga0157375_100649214 359
119 3300014969 Ga0157376_10243103 Ga0157376_102431032 359
120 3300036401 Ga0373937_0191032 Ga0373937_0191032_355_1437 359
121 3300042007 Ga0439449_0001718 Ga0439449_0001718_16_1131 359
122 3300046462 Ga0495651_0245442 Ga0495651_0245442_66_1148 359
123 3300046689 Ga0495613_0140500 Ga0495613_0140500_495_1577 359
124 3300049669 Ga0501235_002568 Ga0501235_002568_2209_3288 359
125 3300005327 Ga0070658_10000789 Ga0070658_100007895 360
126 3300005329 Ga0070683_100001444 Ga0070683_10000144424 360
127 3300005336 Ga0070680_100071145 Ga0070680_1000711452 360
128 3300005530 Ga0070679_100040364 Ga0070679_1000403642 360
129 3300005536 Ga0070697_100064237 Ga0070697_1000642373 360
130 3300005563 Ga0068855_100311450 Ga0068855_1003114502 360
131 3300013307 Ga0157372_10102913 Ga0157372_101029134 360
132 3300013307 Ga0157372_10112562 Ga0157372_101125625 360
133 3300013307 Ga0157372_10151648 Ga0157372_101516483 360
134 3300025917 Ga0207660_10069608 Ga0207660_100696082 360
135 3300025921 Ga0207652_10005149 Ga0207652_1000514910 360
136 3300025921 Ga0207652_10007405 Ga0207652_100074055 360
137 3300037418 Ga0395900_0050290 Ga0395900_0050290_1829_2911 360
138 3300037471 Ga0395905_0000424 Ga0395905_0000424_8887_9969 360
139 3300038443 Ga0395901_0031172 Ga0395901_0031172_2599_3693 360
140 3300050514 nmdc:mga08x19_24559_c1 nmdc:mga08x19_24559_c1_134_1228 360
141 3300053136 Ga0500559_0016253 Ga0500559_0016253_1687_2793 360
142 3300004801 Ga0058860_10803976 Ga0058860_108039761 361
143 3300005841 Ga0068863_100060994 Ga0068863_1000609942 361
144 3300005985 Ga0081539_10009769 Ga0081539_100097694 361
145 3300006871 Ga0075434_100011531 Ga0075434_1000115316 361
146 3300007076 Ga0075435_100023140 Ga0075435_1000231406 361
147 3300009174 Ga0105241_10334328 Ga0105241_103343281 361
148 3300009545 Ga0105237_10004995 Ga0105237_100049955 361
149 3300025913 Ga0207695_10001125 Ga0207695_1000112514 361
150 3300025914 Ga0207671_10000434 Ga0207671_100004348 361
151 3300046460 Ga0495638_0094694 Ga0495638_0094694_656_1747 361
152 3300050513 nmdc:mga0rr50_11027_c1 nmdc:mga0rr50_11027_c1_3620_4720 361
153 3300053103 Ga0500555_002089 Ga0500555_002089_3606_4730 361
154 3300006038 Ga0075365_10121721 Ga0075365_101217211 363
155 3300028563 Ga0265319_1045291 Ga0265319_10452911 363
156 3300032002 Ga0307416_100026147 Ga0307416_1000261474 363
157 3300032126 Ga0307415_100161752 Ga0307415_1001617522 363
158 3300049583 Ga0501067_0003836 Ga0501067_0003836_1629_2861 363
159 3300049589 Ga0501073_0019981 Ga0501073_0019981_593_1825 363
160 3300005535 Ga0070684_100000567 Ga0070684_10000056712 364
161 3300005548 Ga0070665_100103633 Ga0070665_1001036333 364
162 3300003322 rootL2_10053045 rootL2_100530455 365
163 3300005340 Ga0070689_100000008 Ga0070689_100000008181 365
164 3300005467 Ga0070706_100018477 Ga0070706_1000184772 365
165 3300005535 Ga0070684_100031350 Ga0070684_1000313503 365
166 3300005539 Ga0068853_100007084 Ga0068853_1000070846 365
167 3300005563 Ga0068855_100135174 Ga0068855_1001351742 365
168 3300005614 Ga0068856_100076988 Ga0068856_1000769883 365
169 3300013102 Ga0157371_10002290 Ga0157371_100022909 365
170 3300025910 Ga0207684_10015706 Ga0207684_100157062 365
171 3300025921 Ga0207652_10239888 Ga0207652_102398881 365
172 3300025924 Ga0207694_10009979 Ga0207694_100099795 365
173 3300025936 Ga0207670_10000008 Ga0207670_10000008187 365
174 3300025949 Ga0207667_10141200 Ga0207667_101412003 365
175 3300026041 Ga0207639_10001730 Ga0207639_100017302 365
176 3300026078 Ga0207702_10091507 Ga0207702_100915073 365
177 3300039437 Ga0436365_0316489 Ga0436365_0316489_260_1498 365
178 3300048915 Ga0496112_0041827 Ga0496112_0041827_2821_4026 365
179 3300005616 Ga0068852_100041283 Ga0068852_1000412835 366
180 3300025944 Ga0207661_10307643 Ga0207661_103076431 366
181 3300003320 rootH2_10154567 rootH2_101545677 367
182 3300003911 JGI25405J52794_10002651 JGI25405J52794_100026514 367
183 3300005937 Ga0081455_10003007 Ga0081455_100030078 367
184 3300005937 Ga0081455_10057819 Ga0081455_100578192 367
185 3300010375 Ga0105239_10217734 Ga0105239_102177344 367
186 3300025925 Ga0207650_10120817 Ga0207650_101208172 367
187 iso_pu_bacteria 2738541276 2738713535 367

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21338

Top1B_N_bact

Bacterial DNA topoisomerase IB, N-terminal domain

89

137

0.97

PF01028

Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

147

384

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.8148 38 362
2h7g-assembly1.cif.gz_X structure of variola topoisomerase non-covalently bound to dna 0.803 38 362
2b9s-assembly1.cif.gz_A crystal structure of heterodimeric l. donovani topoisomerase i-vanadate-dna complex 0.7848 70 304
1ej9-assembly1.cif.gz_A crystal structure of human topoisomerase i dna complex 0.7582 86 350
3m4a-assembly1.cif.gz_A crystal structure of a bacterial topoisomerase ib in complex with dna reveals a secondary dna binding site 0.7337 59 362
ID Description Score Start End Superfamily
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9606 138 253 3.90.15.10
3m4aA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9371 138 253 3.90.15.10
2f4qA03 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.9273 138 250 3.90.15.10
af_Q9USZ0_628_894_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8939 183 208 2.130.10.10
af_A0A2R8S0L3_185_312_3.90.15.10 Alpha Beta;Alpha-Beta Complex;Topoisomerase I; Chain A, domain 3;Topoisomerase I; Chain A, domain 3 0.8835 107 213 3.90.15.10
ID Description Score Start End GO Terms
AF-A0A2A2KIQ3-F1-model_v4 DNA topoisomerase I catalytic core eukaryotic-type domain-containing protein 0.9928 120 240 GO:0003677
GO:0003917
GO:0006265
AF-A0A436L3U7-F1-model_v4 deleted 0.9853 135 292
AF-A0A4Q3SH14-F1-model_v4 DNA topoisomerase IB 0.9835 7 329 GO:0003677
GO:0003917
GO:0006265
AF-A0A0E4BYR6-F1-model_v4 Topoisomerase IB 0.9817 237 322 GO:0003677
GO:0003917
GO:0006265
AF-A0A535M3I7-F1-model_v4 DNA topoisomerase IB 0.9785 227 315 GO:0003677
GO:0003917
GO:0006265

Feature Viewer

pLDDT pTM Quality
91.12 0.86 High
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Predicted Structure (AlphaFold2)

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