F287556

General Info

Members Datasets Scaffolds Average Seq Length
187 141 187 220

Family's Representative Sequence

Representative Sequence 3300009094|Ga0111539_10016440|Ga0111539_100164406
Length 245
Sequence VSARFERASIDNPRESQRQHPSVNTNPGIIGKKLGMTQLFSEDGTVVRCSVIESDLTVIGKRTKEQNGYDALIVGLGERKEKQTNKPLAGQYKKSGQTPKRFVRELRLDAEIVAKYEVGGKVKLDEVFELGQFVDVQGKTRGRGFTGVMRRWSFAGAVTTHGTHEYKRHGGSIGTNMTPGRTLPGLKMPGHYGDETVSVLNLKVAKIMPEESLLLVEGGVPGPRNSVVVVRGAVKKRGGKPKPAK

Samples

Sample ID Description Type Environment
1 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
2 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
30 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
31 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
38 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
70 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
71 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
72 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
75 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
76 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
77 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
78 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
79 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
80 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
81 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
82 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
83 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
84 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
85 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
86 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
90 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
91 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
92 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
93 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
94 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
95 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
96 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
97 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
98 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
99 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
100 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
101 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
102 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
105 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
109 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
110 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
111 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
112 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
113 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
114 3300049527 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
121 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
122 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
123 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
127 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
132 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
135 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
136 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
137 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
138 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
139 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
140 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.4
Metatranscriptomes 1.6
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.67
Nodule 0
Rhizoplane 3.74
Rhizosphere 85.56
Stem 0
Stem Tuber 0
Unclassified 8.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1024147 3300001904 Bacteria 949
2 Ga0006759J45824_1058026 3300003163 Unclassified 857
3 rootH2_10031343 3300003320 Bacteria 48313
4 rootH1_10031022 3300003323 Bacteria 8758
5 JGI25404J52841_10004403 3300003659 Bacteria 2851
6 Ga0070658_10183604 3300005327 Bacteria 1761
7 Ga0070658_10476189 3300005327 Bacteria 1077
8 Ga0070683_100084097 3300005329 Bacteria 2981
9 Ga0070682_100064808 3300005337 Unclassified 2320
10 Ga0068868_100012318 3300005338 Bacteria 6250
11 Ga0070689_100001626 3300005340 Bacteria 14356
12 Ga0070692_10456347 3300005345 Unclassified 819
13 Ga0070667_100356447 3300005367 Unclassified 1325
14 Ga0070705_100125977 3300005440 Bacteria 1662
15 Ga0070663_100431667 3300005455 Bacteria 1082
16 Ga0070678_100004015 3300005456 Bacteria 8282
17 Ga0070678_100300054 3300005456 Bacteria 1365
18 Ga0068867_100018488 3300005459 Bacteria 4955
19 Ga0068867_100632435 3300005459 Bacteria 937
20 Ga0070707_100448945 3300005468 Bacteria 1250
21 Ga0070684_100455239 3300005535 Bacteria 1183
22 Ga0070672_100000267 3300005543 Bacteria 29530
23 Ga0068855_100000076 3300005563 Bacteria 118910
24 Ga0068855_100004916 3300005563 Bacteria 16313
25 Ga0068856_100139618 3300005614 Bacteria 2430
26 Ga0068856_100293763 3300005614 Bacteria 1642
27 Ga0068852_100517883 3300005616 Bacteria 1190
28 Ga0068859_100131146 3300005617 Bacteria 2578
29 Ga0068863_100091809 3300005841 Bacteria 2880
30 Ga0068863_100452118 3300005841 Bacteria 1261
31 Ga0068863_100890873 3300005841 Bacteria 890
32 Ga0081455_10013061 3300005937 Bacteria 8231
33 Ga0081455_10084575 3300005937 Bacteria 2589
34 Ga0081539_10023831 3300005985 Bacteria 3993
35 Ga0075366_10079450 3300006195 Bacteria 1958
36 Ga0097621_100032389 3300006237 Bacteria 4154
37 Ga0097621_100648285 3300006237 Bacteria 969
38 Ga0097621_100721208 3300006237 Bacteria 919
39 Ga0068871_100431920 3300006358 Bacteria 1178
40 Ga0075428_100554966 3300006844 Bacteria 1228
41 Ga0075430_100055563 3300006846 Bacteria 3329
42 Ga0075429_100246239 3300006880 Bacteria 1565
43 Ga0068865_100040830 3300006881 Bacteria 3155
44 Ga0097620_100131145 3300006931 Bacteria 2578
45 Ga0075435_100004571 3300007076 Bacteria 9524
46 Ga0111539_10016440 3300009094 Bacteria 9174
47 Ga0111539_10041467 3300009094 Bacteria 5534
48 Ga0111539_10614845 3300009094 Bacteria 1265
49 Ga0111539_10671010 3300009094 Bacteria 1207
50 Ga0111539_10985675 3300009094 Bacteria 980
51 Ga0111539_11477650 3300009094 Bacteria 788
52 Ga0105245_10009979 3300009098 Bacteria 8271
53 Ga0105247_10000345 3300009101 Bacteria 40650
54 Ga0105241_10064321 3300009174 Bacteria 2831
55 Ga0105237_10681605 3300009545 Bacteria 1035
56 Ga0105249_10446914 3300009553 Bacteria 1331
57 Ga0157374_10169838 3300013296 Bacteria 2127
58 Ga0157374_10509053 3300013296 Bacteria 1209
59 Ga0157378_10369613 3300013297 Bacteria 1406
60 Ga0163163_10052541 3300014325 Bacteria 4020
61 Ga0163163_10617506 3300014325 Bacteria 1147
62 Ga0157380_10280821 3300014326 Bacteria 1523
63 Ga0182008_10338061 3300014497 Bacteria 796
64 Ga0157376_10066959 3300014969 Bacteria 3037
65 Ga0157376_10180449 3300014969 Bacteria 1929
66 Ga0157376_10399193 3300014969 Bacteria 1329
67 Ga0163161_10177159 3300017792 Bacteria 1633
68 Ga0163161_10915244 3300017792 Bacteria 744
69 Ga0207643_10369364 3300025908 Unclassified 903
70 Ga0207705_10522387 3300025909 Bacteria 922
71 Ga0207654_10084122 3300025911 Bacteria 1923
72 Ga0207659_10099265 3300025926 Unclassified 2192
73 Ga0207687_10002097 3300025927 Bacteria 13623
74 Ga0207670_10053431 3300025936 Bacteria 2721
75 Ga0207704_10128181 3300025938 Bacteria 1751
76 Ga0207691_10000386 3300025940 Bacteria 44174
77 Ga0207691_10188929 3300025940 Bacteria 1797
78 Ga0207667_10004847 3300025949 Bacteria 16448
79 Ga0207667_10389026 3300025949 Unclassified 1420
80 Ga0207668_10428808 3300025972 Bacteria 1124
81 Ga0207677_10075166 3300026023 Bacteria 2400
82 Ga0207678_10019119 3300026067 Bacteria 6014
83 Ga0207678_10202768 3300026067 Bacteria 1696
84 Ga0207708_10258054 3300026075 Bacteria 1406
85 Ga0207708_10598185 3300026075 Bacteria 934
86 Ga0207702_10061686 3300026078 Bacteria 3199
87 Ga0207641_10090999 3300026088 Bacteria 2669
88 Ga0207641_10531405 3300026088 Bacteria 1145
89 Ga0207648_10044816 3300026089 Bacteria 3881
90 Ga0207675_100050725 3300026118 Unclassified 3872
91 Ga0207683_10055276 3300026121 Bacteria 3481
92 Ga0207683_10167664 3300026121 Bacteria 1988
93 Ga0307509_10412535 3300031507 Unclassified 1054
94 Ga0307508_10002449 3300031616 Bacteria 19567
95 Ga0316575_10053153 3300031665 Bacteria 1613
96 Ga0316576_10003019 3300031727 Bacteria 9778
97 Ga0316576_10016496 3300031727 Unclassified 4991
98 Ga0316578_10088343 3300031728 Bacteria 1849
99 Ga0307516_10003830 3300031730 Bacteria 19054
100 Ga0307406_10038897 3300031901 Bacteria 2947
101 Ga0307412_10313877 3300031911 Bacteria 1244
102 Ga0307409_100049234 3300031995 Bacteria 3212
103 Ga0307409_100708217 3300031995 Bacteria 1007
104 Ga0307415_100221580 3300032126 Bacteria 1517
105 Ga0307507_10375690 3300033179 Bacteria 821
106 Ga0373939_0072641 3300035114 Bacteria 1124
107 Ga0373941_0192011 3300035115 Bacteria 772
108 Ga0373954_0260056 3300035118 Bacteria 855
109 Ga0373955_0442954 3300035172 Bacteria 791
110 Ga0373955_0458773 3300035172 Bacteria 777
111 Ga0373931_0074378 3300035691 Bacteria 1861
112 Ga0373931_0098358 3300035691 Bacteria 1642
113 Ga0373933_0175488 3300035724 Bacteria 1365
114 Ga0373937_0054934 3300036401 Bacteria 3655
115 Ga0373937_0058195 3300036401 Bacteria 3551
116 Ga0316582_0119290 3300036647 Unclassified 1764
117 Ga0316584_0024539 3300036712 Bacteria 4414
118 Ga0373925_0009672 3300037068 Bacteria 7015
119 Ga0395905_0051390 3300037471 Bacteria 3861
120 Ga0395905_0485025 3300037471 Bacteria 1136
121 Ga0436360_0836985 3300039438 Bacteria 1602
122 Ga0439465_0150113 3300041413 Bacteria 832
123 Ga0451789_0157626 3300041443 Bacteria 1023
124 Ga0451791_0467385 3300041451 Bacteria 2266
125 Ga0451797_1104518 3300041453 Bacteria 1198
126 Ga0451798_0930030 3300041458 Bacteria 928
127 Ga0451800_0200223 3300041459 Bacteria 1224
128 Ga0451807_1073199 3300041486 Bacteria 1975
129 Ga0451807_2108797 3300041486 Bacteria 3226
130 Ga0451837_0426527 3300041494 Bacteria 1404
131 Ga0451837_0506261 3300041494 Bacteria 1418
132 Ga0451837_0877349 3300041494 Bacteria 1194
133 Ga0451841_0800885 3300041498 Bacteria 2530
134 Ga0451849_0047154 3300041505 Bacteria 3710
135 Ga0451851_0262192 3300041507 Bacteria 1880
136 Ga0451853_1477283 3300041512 Bacteria 7502
137 Ga0451853_3308082 3300041512 Bacteria 850
138 Ga0439445_0128022 3300042004 Unclassified 732
139 Ga0451577_0347782 3300042876 Bacteria 1345
140 Ga0453683_0029315 3300044673 Bacteria 3480
141 Ga0466960_0020068 3300044901 Bacteria 2955
142 Ga0451576_0907630 3300045051 Unclassified 924
143 Ga0466967_0948650 3300045976 Bacteria 856
144 Ga0495645_0503941 3300046543 Bacteria 756
145 Ga0495589_0157005 3300046794 Unclassified 1084
146 Ga0495600_0321358 3300046809 Bacteria 973
147 Ga0495581_0240677 3300047315 Bacteria 1058
148 Ga0495684_0481638 3300047471 Unclassified 857
149 Ga0496122_0276885 3300048925 Bacteria 920
150 Ga0501311_024946 3300049527 Bacteria 835
151 Ga0501034_0016831 3300049571 Bacteria 7497
152 Ga0501038_0014805 3300049574 Bacteria 7104
153 Ga0501039_0462644 3300049575 Bacteria 996
154 Ga0501043_0065595 3300049579 Bacteria 2851
155 Ga0501047_0023093 3300049581 Bacteria 5970
156 Ga0501047_0064596 3300049581 Bacteria 3530
157 Ga0501047_0141323 3300049581 Bacteria 2286
158 Ga0501067_0000412 3300049583 Bacteria 23310
159 Ga0501067_0017118 3300049583 Bacteria 4005
160 Ga0501067_0170312 3300049583 Bacteria 1213
161 Ga0501068_0000277 3300049584 Bacteria 25402
162 Ga0501069_0000578 3300049585 Bacteria 16960
163 Ga0501072_0000005 3300049588 Bacteria 263381
164 Ga0501073_0001700 3300049589 Bacteria 16314
165 Ga0501074_0000391 3300049590 Bacteria 26033
166 Ga0501074_0030675 3300049590 Bacteria 3896
167 Ga0501074_0454732 3300049590 Bacteria 908
168 Ga0501077_0031977 3300049593 Bacteria 3348
169 Ga0501079_0009374 3300049741 Bacteria 7418
170 Ga0501080_0414128 3300049742 Bacteria 1211
171 Ga0501083_0374292 3300049744 Bacteria 926
172 Ga0501035_0086180 3300049822 Bacteria 2768
173 nmdc:mga0k408_205585_c1 3300050493 Bacteria 1175
174 nmdc:mga0k408_501857_c1 3300050493 Bacteria 719
175 nmdc:mga0qj67_98008_c1 3300050509 Bacteria 2361
176 nmdc:mga08y16_178803_c1 3300050511 Bacteria 2203
177 nmdc:mga08y16_39649_c1 3300050511 Bacteria 4941
178 Ga0495601_0446194 3300053077 Bacteria 837
179 Ga0495595_0030338 3300053084 Bacteria 2425
180 Ga0500555_017773 3300053103 Bacteria 2048
181 Ga0500616_0068644 3300053153 Bacteria 1815
182 Ga0501084_0000203 3300054114 Bacteria 45861
183 Ga0501084_0044967 3300054114 Bacteria 3697
184 Ga0587062_019446 3300059639 Bacteria 948
185 Ga0501082_0000059 3300060353 Bacteria 78018
186 Ga0501082_0171967 3300060353 Bacteria 1883
187 Ga0530510_0052686 3300061734 Bacteria 2940

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025908 Ga0207643_10369364 Ga0207643_103693641 182
2 3300013296 Ga0157374_10169838 Ga0157374_101698383 189
3 3300031507 Ga0307509_10412535 Ga0307509_104125351 200
4 3300005614 Ga0068856_100139618 Ga0068856_1001396184 202
5 3300006195 Ga0075366_10079450 Ga0075366_100794502 202
6 3300025940 Ga0207691_10188929 Ga0207691_101889292 202
7 3300026078 Ga0207702_10061686 Ga0207702_100616861 202
8 3300031901 Ga0307406_10038897 Ga0307406_100388972 202
9 3300031995 Ga0307409_100049234 Ga0307409_1000492343 202
10 3300005563 Ga0068855_100000076 Ga0068855_10000007680 203
11 3300005617 Ga0068859_100131146 Ga0068859_1001311462 203
12 3300006931 Ga0097620_100131145 Ga0097620_1001311452 203
13 3300009098 Ga0105245_10009979 Ga0105245_100099795 203
14 3300009174 Ga0105241_10064321 Ga0105241_100643213 203
15 3300025911 Ga0207654_10084122 Ga0207654_100841223 203
16 3300025927 Ga0207687_10002097 Ga0207687_100020973 203
17 3300041459 Ga0451800_0200223 Ga0451800_0200223_499_1167 203
18 3300005327 Ga0070658_10476189 Ga0070658_104761891 204
19 3300005337 Ga0070682_100064808 Ga0070682_1000648082 204
20 3300005563 Ga0068855_100004916 Ga0068855_10000491610 204
21 3300014325 Ga0163163_10052541 Ga0163163_100525414 204
22 3300017792 Ga0163161_10915244 Ga0163161_109152441 204
23 3300025949 Ga0207667_10004847 Ga0207667_1000484711 204
24 3300025949 Ga0207667_10389026 Ga0207667_103890262 204
25 3300026067 Ga0207678_10019119 Ga0207678_100191192 204
26 3300026075 Ga0207708_10598185 Ga0207708_105981852 204
27 3300035691 Ga0373931_0074378 Ga0373931_0074378_585_1250 205
28 3300005841 Ga0068863_100452118 Ga0068863_1004521182 207
29 3300006237 Ga0097621_100648285 Ga0097621_1006482851 207
30 3300006358 Ga0068871_100431920 Ga0068871_1004319202 207
31 3300014326 Ga0157380_10280821 Ga0157380_102808212 207
32 3300053103 Ga0500555_017773 Ga0500555_017773_547_1173 207
33 3300031665 Ga0316575_10053153 Ga0316575_100531532 208
34 3300035172 Ga0373955_0458773 Ga0373955_0458773_83_748 208
35 3300037068 Ga0373925_0009672 Ga0373925_0009672_4613_5278 208
36 3300009094 Ga0111539_10985675 Ga0111539_109856751 209
37 3300009545 Ga0105237_10681605 Ga0105237_106816052 209
38 3300031727 Ga0316576_10003019 Ga0316576_100030194 209
39 3300031728 Ga0316578_10088343 Ga0316578_100883432 209
40 3300035172 Ga0373955_0442954 Ga0373955_0442954_147_779 209
41 3300036647 Ga0316582_0119290 Ga0316582_0119290_1067_1744 209
42 3300036712 Ga0316584_0024539 Ga0316584_0024539_1990_2667 209
43 3300042004 Ga0439445_0128022 Ga0439445_0128022_55_720 209
44 3300046794 Ga0495589_0157005 Ga0495589_0157005_421_1065 209
45 3300049583 Ga0501067_0017118 Ga0501067_0017118_2580_3251 209
46 3300050493 nmdc:mga0k408_205585_c1 nmdc:mga0k408_205585_c1_34_693 209
47 3300031616 Ga0307508_10002449 Ga0307508_1000244914 210
48 3300044673 Ga0453683_0029315 Ga0453683_0029315_1460_2125 210
49 3300035115 Ga0373941_0192011 Ga0373941_0192011_119_760 211
50 3300049581 Ga0501047_0141323 Ga0501047_0141323_792_1496 211
51 3300005455 Ga0070663_100431667 Ga0070663_1004316671 212
52 3300026067 Ga0207678_10202768 Ga0207678_102027681 212
53 3300049583 Ga0501067_0170312 Ga0501067_0170312_530_1183 212
54 3300041458 Ga0451798_0930030 Ga0451798_0930030_63_794 213
55 3300046809 Ga0495600_0321358 Ga0495600_0321358_70_726 213
56 3300049822 Ga0501035_0086180 Ga0501035_0086180_1309_1977 213
57 3300041413 Ga0439465_0150113 Ga0439465_0150113_33_689 214
58 3300026075 Ga0207708_10258054 Ga0207708_102580541 215
59 3300042876 Ga0451577_0347782 Ga0451577_0347782_515_1225 215
60 3300005367 Ga0070667_100356447 Ga0070667_1003564472 216
61 3300005937 Ga0081455_10013061 Ga0081455_100130614 216
62 3300005985 Ga0081539_10023831 Ga0081539_100238312 216
63 3300009094 Ga0111539_10614845 Ga0111539_106148452 216
64 3300009094 Ga0111539_11477650 Ga0111539_114776501 216
65 3300017792 Ga0163161_10177159 Ga0163161_101771592 216
66 3300031727 Ga0316576_10016496 Ga0316576_100164963 216
67 3300035118 Ga0373954_0260056 Ga0373954_0260056_80_745 216
68 3300036401 Ga0373937_0054934 Ga0373937_0054934_2327_2992 216
69 3300041443 Ga0451789_0157626 Ga0451789_0157626_71_733 216
70 3300041451 Ga0451791_0467385 Ga0451791_0467385_467_1129 216
71 3300041453 Ga0451797_1104518 Ga0451797_1104518_92_754 216
72 3300041486 Ga0451807_2108797 Ga0451807_2108797_632_1294 216
73 3300041494 Ga0451837_0426527 Ga0451837_0426527_541_1203 216
74 3300046543 Ga0495645_0503941 Ga0495645_0503941_74_736 216
75 3300047471 Ga0495684_0481638 Ga0495684_0481638_24_689 216
76 3300048925 Ga0496122_0276885 Ga0496122_0276885_232_894 216
77 3300049574 Ga0501038_0014805 Ga0501038_0014805_2830_3495 216
78 3300049575 Ga0501039_0462644 Ga0501039_0462644_305_970 216
79 3300049579 Ga0501043_0065595 Ga0501043_0065595_679_1344 216
80 3300049581 Ga0501047_0023093 Ga0501047_0023093_1871_2536 216
81 3300049583 Ga0501067_0000412 Ga0501067_0000412_4027_4692 216
82 3300049584 Ga0501068_0000277 Ga0501068_0000277_21059_21724 216
83 3300049585 Ga0501069_0000578 Ga0501069_0000578_12673_13338 216
84 3300049588 Ga0501072_0000005 Ga0501072_0000005_238725_239390 216
85 3300049589 Ga0501073_0001700 Ga0501073_0001700_11053_11718 216
86 3300049590 Ga0501074_0000391 Ga0501074_0000391_21759_22424 216
87 3300049590 Ga0501074_0030675 Ga0501074_0030675_2198_2863 216
88 3300049590 Ga0501074_0454732 Ga0501074_0454732_104_769 216
89 3300049593 Ga0501077_0031977 Ga0501077_0031977_76_741 216
90 3300049741 Ga0501079_0009374 Ga0501079_0009374_5074_5739 216
91 3300049742 Ga0501080_0414128 Ga0501080_0414128_373_1038 216
92 3300049744 Ga0501083_0374292 Ga0501083_0374292_220_885 216
93 3300053077 Ga0495601_0446194 Ga0495601_0446194_46_708 216
94 3300054114 Ga0501084_0000203 Ga0501084_0000203_17812_18477 216
95 3300060353 Ga0501082_0000059 Ga0501082_0000059_9970_10635 216
96 3300061734 Ga0530510_0052686 Ga0530510_0052686_1318_1983 216
97 3300003163 Ga0006759J45824_1058026 Ga0006759J45824_10580261 217
98 3300003320 rootH2_10031343 rootH2_1003134349 217
99 3300005329 Ga0070683_100084097 Ga0070683_1000840972 217
100 3300005345 Ga0070692_10456347 Ga0070692_104563471 217
101 3300005456 Ga0070678_100004015 Ga0070678_1000040156 217
102 3300005459 Ga0068867_100018488 Ga0068867_1000184886 217
103 3300005535 Ga0070684_100455239 Ga0070684_1004552391 217
104 3300005543 Ga0070672_100000267 Ga0070672_10000026715 217
105 3300005616 Ga0068852_100517883 Ga0068852_1005178831 217
106 3300005841 Ga0068863_100890873 Ga0068863_1008908731 217
107 3300005937 Ga0081455_10084575 Ga0081455_100845753 217
108 3300006237 Ga0097621_100721208 Ga0097621_1007212081 217
109 3300006844 Ga0075428_100554966 Ga0075428_1005549661 217
110 3300006846 Ga0075430_100055563 Ga0075430_1000555633 217
111 3300006880 Ga0075429_100246239 Ga0075429_1002462392 217
112 3300009094 Ga0111539_10671010 Ga0111539_106710101 217
113 3300009553 Ga0105249_10446914 Ga0105249_104469141 217
114 3300014969 Ga0157376_10180449 Ga0157376_101804491 217
115 3300025926 Ga0207659_10099265 Ga0207659_100992652 217
116 3300025940 Ga0207691_10000386 Ga0207691_1000038623 217
117 3300026088 Ga0207641_10531405 Ga0207641_105314052 217
118 3300026089 Ga0207648_10044816 Ga0207648_100448161 217
119 3300026118 Ga0207675_100050725 Ga0207675_1000507251 217
120 3300026121 Ga0207683_10167664 Ga0207683_101676642 217
121 3300031730 Ga0307516_10003830 Ga0307516_100038304 217
122 3300035691 Ga0373931_0098358 Ga0373931_0098358_896_1561 217
123 3300035724 Ga0373933_0175488 Ga0373933_0175488_677_1342 217
124 3300037471 Ga0395905_0051390 Ga0395905_0051390_74_739 217
125 3300037471 Ga0395905_0485025 Ga0395905_0485025_61_726 217
126 3300039438 Ga0436360_0836985 Ga0436360_0836985_285_1016 217
127 3300041494 Ga0451837_0506261 Ga0451837_0506261_519_1184 217
128 3300041512 Ga0451853_3308082 Ga0451853_3308082_151_816 217
129 3300044901 Ga0466960_0020068 Ga0466960_0020068_753_1421 217
130 3300045051 Ga0451576_0907630 Ga0451576_0907630_178_843 217
131 3300045976 Ga0466967_0948650 Ga0466967_0948650_96_761 217
132 3300049527 Ga0501311_024946 Ga0501311_024946_67_732 217
133 3300049571 Ga0501034_0016831 Ga0501034_0016831_5767_6432 217
134 3300050509 nmdc:mga0qj67_98008_c1 nmdc:mga0qj67_98008_c1_624_1289 217
135 3300059639 Ga0587062_019446 Ga0587062_019446_215_880 217
136 3300003323 rootH1_10031022 rootH1_100310226 218
137 3300005327 Ga0070658_10183604 Ga0070658_101836042 218
138 3300005338 Ga0068868_100012318 Ga0068868_1000123189 218
139 3300005456 Ga0070678_100300054 Ga0070678_1003000541 218
140 3300005468 Ga0070707_100448945 Ga0070707_1004489452 218
141 3300005614 Ga0068856_100293763 Ga0068856_1002937632 218
142 3300005841 Ga0068863_100091809 Ga0068863_1000918093 218
143 3300006237 Ga0097621_100032389 Ga0097621_1000323894 218
144 3300006881 Ga0068865_100040830 Ga0068865_1000408302 218
145 3300007076 Ga0075435_100004571 Ga0075435_1000045713 218
146 3300013296 Ga0157374_10509053 Ga0157374_105090531 218
147 3300013297 Ga0157378_10369613 Ga0157378_103696132 218
148 3300014325 Ga0163163_10617506 Ga0163163_106175062 218
149 3300014969 Ga0157376_10066959 Ga0157376_100669593 218
150 3300014969 Ga0157376_10399193 Ga0157376_103991931 218
151 3300025909 Ga0207705_10522387 Ga0207705_105223871 218
152 3300025938 Ga0207704_10128181 Ga0207704_101281812 218
153 3300026023 Ga0207677_10075166 Ga0207677_100751663 218
154 3300026088 Ga0207641_10090999 Ga0207641_100909993 218
155 3300026121 Ga0207683_10055276 Ga0207683_100552764 218
156 3300031995 Ga0307409_100708217 Ga0307409_1007082171 218
157 3300035114 Ga0373939_0072641 Ga0373939_0072641_369_1025 218
158 3300047315 Ga0495581_0240677 Ga0495581_0240677_37_705 218
159 3300049581 Ga0501047_0064596 Ga0501047_0064596_1287_1958 218
160 3300054114 Ga0501084_0044967 Ga0501084_0044967_1930_2601 218
161 3300060353 Ga0501082_0171967 Ga0501082_0171967_1070_1741 218
162 3300005440 Ga0070705_100125977 Ga0070705_1001259772 219
163 3300005459 Ga0068867_100632435 Ga0068867_1006324351 219
164 3300009094 Ga0111539_10016440 Ga0111539_100164406 219
165 3300009094 Ga0111539_10041467 Ga0111539_100414674 219
166 3300014497 Ga0182008_10338061 Ga0182008_103380611 219
167 3300025972 Ga0207668_10428808 Ga0207668_104288081 219
168 3300031911 Ga0307412_10313877 Ga0307412_103138772 219
169 3300032126 Ga0307415_100221580 Ga0307415_1002215803 219
170 3300036401 Ga0373937_0058195 Ga0373937_0058195_1663_2397 219
171 3300041486 Ga0451807_1073199 Ga0451807_1073199_495_1166 219
172 3300041494 Ga0451837_0877349 Ga0451837_0877349_269_943 219
173 3300041498 Ga0451841_0800885 Ga0451841_0800885_1682_2353 219
174 3300041505 Ga0451849_0047154 Ga0451849_0047154_817_1488 219
175 3300041507 Ga0451851_0262192 Ga0451851_0262192_664_1335 219
176 3300041512 Ga0451853_1477283 Ga0451853_1477283_476_1147 219
177 3300050493 nmdc:mga0k408_501857_c1 nmdc:mga0k408_501857_c1_26_697 219
178 3300050511 nmdc:mga08y16_178803_c1 nmdc:mga08y16_178803_c1_817_1488 219
179 3300050511 nmdc:mga08y16_39649_c1 nmdc:mga08y16_39649_c1_2072_2809 219
180 3300053084 Ga0495595_0030338 Ga0495595_0030338_607_1341 219
181 3300001904 JGI24736J21556_1024147 JGI24736J21556_10241472 220
182 3300003659 JGI25404J52841_10004403 JGI25404J52841_100044032 220
183 3300005340 Ga0070689_100001626 Ga0070689_10000162612 220
184 3300009101 Ga0105247_10000345 Ga0105247_1000034534 220
185 3300025936 Ga0207670_10053431 Ga0207670_100534311 220
186 3300033179 Ga0307507_10375690 Ga0307507_103756901 220
187 3300053153 Ga0500616_0068644 Ga0500616_0068644_1058_1777 220

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00297

Ribosomal_L3

Ribosomal protein L3

32

212

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
8c97-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.8811 1 209
8c93-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.87 1 209
8c97-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.8661 1 209
8c93-assembly1.cif.gz_D cryo-em captures early ribosome assembly in action 0.8599 1 209
6pvk-assembly1.cif.gz_D bacterial 45srbga ribosomal particle class a 0.8586 2 209
ID Description Score Start End Superfamily
af_P9WH87_35_101_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9686 34 98 3.30.160.810
af_Q9LIT4_106_169_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9685 34 98 3.30.160.810
af_Q9SKX4_88_148_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9498 34 85 3.30.160.810
af_Q9LIT4_106_169_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9393 34 98 3.30.160.810
af_Q54I61_95_160_3.30.160.810 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.9387 32 95 3.30.160.810
ID Description Score Start End GO Terms
AF-A0A2V6DPT5-F1-model_v4 50S ribosomal protein L3 0.9442 1 84 GO:0003735
GO:0006412
GO:0022625
AF-A0A529QAV9-F1-model_v4 50S ribosomal protein L3 0.9373 2 87 GO:0003735
GO:0006412
GO:0022625
AF-A0A087B7P6-F1-model_v4 deleted 0.9349 4 105
AF-A0A4Q5QTA6-F1-model_v4 50S ribosomal protein L3 0.932 6 107 GO:0003735
GO:0006412
GO:0022625
AF-A0A564VPD5-F1-model_v4 deleted 0.9267 4 106

Feature Viewer

pLDDT pTM Quality
80.24 0.71 High
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Predicted Structure (AlphaFold2)

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