F287862

General Info

Members Datasets Scaffolds Average Seq Length
187 95 187 425

Family's Representative Sequence

Representative Sequence 3300028800|Ga0265338_10000184|Ga0265338_1000018478
Length 435
Sequence VSILEELKWRGLIADCTDAAELAKRLALPVTLYCGFDPTADSLHVGNLVPLLALRRFQLLGHNPIAVAGGATGSIGDPSGKTAERQLLTKEILDHNIASVKVQLAKLLDFDTKQNPARLVDNASWTQNISYLDFLRDIGKHFSVNQMVAKESVRARMEDREVGISYTEFSYMLLQAFDFYHLWNEYDCQLQIGGSDQWGNITAGIDLCRKKGFKKFHGLFRPPPFGLTLPLITNADGTKFGKTEAGAIWLDRKRTSVYRFYQFWINTDDRDAVRYLKFFTLLPQEEIGALEKKHAENPGAREAHKALARTVTDLIHGEQVTQEAIRASEILFGGELKGVSESTFNDIVGEVPTKEFEKVKLDGAGFPLVELLVHAGLCQSKGQARKDIEGGGVNINNVREASAARAVTSNDLLFGKHLLLRKGKKNYVVVTVKEP

Samples

Sample ID Description Type Environment
1 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
2 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
3 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
4 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
5 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
6 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
7 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
8 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
9 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
10 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
11 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
12 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
13 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
14 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
15 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
18 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
19 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
29 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
30 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
31 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
32 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
33 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
34 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
37 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
38 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
39 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
40 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
41 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
42 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
43 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
44 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
45 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
46 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
47 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
48 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
49 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
50 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
51 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
52 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
53 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
54 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
55 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
56 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
57 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
62 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
63 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
64 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
65 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
66 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
67 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
68 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
69 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
70 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
71 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
75 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
76 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
77 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
78 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
79 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
80 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
81 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
82 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
83 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
84 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
85 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
86 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
87 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
88 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
89 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
92 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.07
Nodule 0
Rhizoplane 1.07
Rhizosphere 97.86
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070689_100024724 3300005340 Bacteria 4506
2 Ga0070714_100003300 3300005435 Bacteria 12031
3 Ga0070711_100000512 3300005439 Bacteria 20157
4 Ga0070681_10010296 3300005458 Bacteria 9228
5 Ga0070679_100122900 3300005530 Bacteria 2579
6 Ga0070686_100068488 3300005544 Bacteria 2315
7 Ga0068855_100016932 3300005563 Bacteria 8765
8 Ga0068855_100064851 3300005563 Bacteria 4260
9 Ga0068855_100131976 3300005563 Bacteria 2852
10 Ga0068855_100349361 3300005563 Bacteria 1629
11 Ga0068856_100000247 3300005614 Bacteria 58943
12 Ga0068859_100030124 3300005617 Bacteria 5444
13 Ga0068859_100114968 3300005617 Bacteria 2755
14 Ga0068863_100114193 3300005841 Bacteria 2573
15 Ga0068863_100272328 3300005841 Bacteria 1639
16 Ga0068858_100148050 3300005842 Bacteria 2206
17 Ga0097620_100030124 3300006931 Bacteria 5444
18 Ga0097620_100114974 3300006931 Bacteria 2755
19 Ga0105240_10013365 3300009093 Bacteria 11278
20 Ga0105240_10083609 3300009093 Bacteria 3916
21 Ga0105242_10094305 3300009176 Bacteria 2524
22 Ga0105248_10126235 3300009177 Bacteria 2886
23 Ga0105238_10001266 3300009551 Bacteria 25411
24 Ga0105238_10170008 3300009551 Bacteria 2156
25 Ga0105238_10231687 3300009551 Bacteria 1823
26 Ga0157370_10018787 3300013104 Bacteria 6950
27 Ga0157370_10123216 3300013104 Bacteria 2420
28 Ga0163163_10000153 3300014325 Bacteria 71877
29 Ga0163163_10023155 3300014325 Bacteria 5893
30 Ga0207695_10099220 3300025913 Bacteria 2910
31 Ga0207695_10222737 3300025913 Bacteria 1793
32 Ga0207663_10001668 3300025916 Bacteria 10452
33 Ga0207694_10001564 3300025924 Bacteria 19387
34 Ga0207694_10004972 3300025924 Bacteria 10291
35 Ga0207694_10178791 3300025924 Bacteria 1720
36 Ga0207664_10004980 3300025929 Bacteria 9030
37 Ga0207670_10002830 3300025936 Bacteria 9151
38 Ga0207670_10055614 3300025936 Bacteria 2675
39 Ga0207670_10128533 3300025936 Bacteria 1852
40 Ga0207667_10022709 3300025949 Bacteria 6921
41 Ga0207667_10023886 3300025949 Bacteria 6727
42 Ga0207667_10094865 3300025949 Bacteria 3080
43 Ga0207702_10001127 3300026078 Bacteria 27289
44 Ga0207641_10299081 3300026088 Bacteria 1519
45 Ga0207674_10006567 3300026116 Bacteria 13681
46 Ga0265337_1000172 3300028556 Bacteria 33853
47 Ga0265337_1000224 3300028556 Bacteria 30283
48 Ga0265337_1003621 3300028556 Bacteria 6638
49 Ga0265337_1003664 3300028556 Bacteria 6582
50 Ga0265326_10027844 3300028558 Bacteria 1611
51 Ga0265319_1000007 3300028563 Bacteria 217194
52 Ga0265319_1008051 3300028563 Bacteria 4660
53 Ga0265319_1008428 3300028563 Bacteria 4514
54 Ga0265319_1036178 3300028563 Bacteria 1690
55 Ga0265334_10004904 3300028573 Bacteria 5883
56 Ga0265334_10016714 3300028573 Bacteria 3034
57 Ga0265334_10018093 3300028573 Bacteria 2904
58 Ga0265318_10043959 3300028577 Bacteria 1692
59 Ga0265323_10000183 3300028653 Bacteria 37704
60 Ga0265323_10006585 3300028653 Bacteria 4875
61 Ga0265323_10039695 3300028653 Bacteria 1716
62 Ga0265336_10000757 3300028666 Bacteria 17176
63 Ga0265336_10018371 3300028666 Bacteria 2266
64 Ga0265338_10000025 3300028800 Bacteria 296972
65 Ga0265338_10000101 3300028800 Bacteria 159323
66 Ga0265338_10000184 3300028800 Bacteria 116834
67 Ga0265338_10000263 3300028800 Bacteria 95638
68 Ga0265338_10001365 3300028800 Bacteria 39706
69 Ga0265338_10001733 3300028800 Bacteria 34498
70 Ga0265338_10003616 3300028800 Bacteria 21554
71 Ga0265338_10003660 3300028800 Bacteria 21408
72 Ga0265338_10006727 3300028800 Bacteria 14515
73 Ga0265338_10008583 3300028800 Bacteria 12364
74 Ga0265338_10010134 3300028800 Bacteria 11119
75 Ga0265338_10010935 3300028800 Bacteria 10550
76 Ga0265338_10022151 3300028800 Bacteria 6593
77 Ga0265338_10028756 3300028800 Bacteria 5534
78 Ga0265338_10035733 3300028800 Bacteria 4768
79 Ga0265338_10044436 3300028800 Bacteria 4102
80 Ga0265338_10059717 3300028800 Bacteria 3357
81 Ga0265338_10083491 3300028800 Bacteria 2671
82 Ga0265338_10109255 3300028800 Bacteria 2232
83 Ga0265338_10186819 3300028800 Bacteria 1574
84 Ga0265324_10000146 3300029957 Bacteria 54469
85 Ga0265324_10002363 3300029957 Bacteria 9733
86 Ga0265324_10011580 3300029957 Bacteria 3358
87 Ga0265320_10000296 3300031240 Bacteria 40524
88 Ga0265320_10001072 3300031240 Bacteria 20244
89 Ga0265320_10011044 3300031240 Bacteria 5335
90 Ga0265320_10031612 3300031240 Bacteria 2717
91 Ga0265320_10069704 3300031240 Bacteria 1659
92 Ga0265325_10001910 3300031241 Bacteria 14389
93 Ga0265325_10011319 3300031241 Bacteria 5126
94 Ga0265325_10057803 3300031241 Bacteria 1977
95 Ga0265340_10000859 3300031247 Bacteria 17275
96 Ga0265340_10025536 3300031247 Bacteria 2991
97 Ga0265339_10026223 3300031249 Bacteria 3339
98 Ga0265327_10001308 3300031251 Bacteria 32516
99 Ga0265327_10001384 3300031251 Bacteria 30970
100 Ga0265327_10008512 3300031251 Bacteria 7625
101 Ga0265327_10067603 3300031251 Bacteria 1800
102 Ga0265316_10005083 3300031344 Bacteria 12899
103 Ga0265316_10012135 3300031344 Bacteria 7735
104 Ga0265316_10018008 3300031344 Bacteria 6085
105 Ga0265316_10073142 3300031344 Bacteria 2640
106 Ga0265313_10001258 3300031595 Bacteria 24105
107 Ga0265313_10009664 3300031595 Bacteria 6227
108 Ga0265313_10046183 3300031595 Bacteria 2115
109 Ga0265314_10002965 3300031711 Bacteria 16822
110 Ga0265314_10090928 3300031711 Bacteria 1987
111 Ga0373929_0000256 3300035085 Bacteria 9821
112 Ga0373944_0000766 3300035089 Bacteria 7815
113 Ga0373951_0002909 3300035091 Bacteria 4257
114 Ga0373932_0000001 3300035112 Bacteria 1459067
115 Ga0373945_0007940 3300035116 Bacteria 3444
116 Ga0373945_0013762 3300035116 Bacteria 2703
117 Ga0373954_0004356 3300035118 Bacteria 6086
118 Ga0373956_0002799 3300035119 Bacteria 7048
119 Ga0373962_0000045 3300035242 Bacteria 28368
120 Ga0373931_0000002 3300035691 Bacteria 599830
121 Ga0373935_0006954 3300035692 Bacteria 6754
122 Ga0373927_0033796 3300035695 Bacteria 3327
123 Ga0373927_0036712 3300035695 Bacteria 3186
124 Ga0373933_0002939 3300035724 Bacteria 9506
125 Ga0373937_0039061 3300036401 Bacteria 4325
126 Ga0373937_0091934 3300036401 Bacteria 2812
127 Ga0373925_0000775 3300037068 Bacteria 29377
128 Ga0373925_0004473 3300037068 Bacteria 10565
129 Ga0373925_0009483 3300037068 Bacteria 7087
130 Ga0451577_0012160 3300042876 Bacteria 8095
131 Ga0451577_0014985 3300042876 Bacteria 7215
132 Ga0453684_0002436 3300044712 Bacteria 45223
133 Ga0453684_0008855 3300044712 Bacteria 17831
134 Ga0453684_0031452 3300044712 Bacteria 7459
135 Ga0453684_0038595 3300044712 Bacteria 6525
136 Ga0453684_0142959 3300044712 Bacteria 2854
137 Ga0453684_0204678 3300044712 Bacteria 2298
138 Ga0451576_0030061 3300045051 Bacteria 5809
139 Ga0451576_0056263 3300045051 Bacteria 4115
140 Ga0451576_0056631 3300045051 Bacteria 4099
141 Ga0451576_0445652 3300045051 Bacteria 1359
142 Ga0495592_0000027 3300046454 Bacteria 132938
143 Ga0495629_0037759 3300046459 Bacteria 3404
144 Ga0495651_0058846 3300046462 Unclassified 2948
145 Ga0495662_0083635 3300046476 Bacteria 1553
146 Ga0495664_0010218 3300046477 Bacteria 5266
147 Ga0495618_0010201 3300046514 Bacteria 5682
148 Ga0495618_0014967 3300046514 Bacteria 4731
149 Ga0495628_0000349 3300046516 Bacteria 42121
150 Ga0495628_0105161 3300046516 Bacteria 2175
151 Ga0495630_0002119 3300046517 Bacteria 13799
152 Ga0495630_0190384 3300046517 Bacteria 1565
153 Ga0495666_0110024 3300046526 Bacteria 1294
154 Ga0495652_0019144 3300046529 Bacteria 6099
155 Ga0495640_0055030 3300046533 Bacteria 2723
156 Ga0495586_0000512 3300046535 Bacteria 22881
157 Ga0495586_0000686 3300046535 Bacteria 19274
158 Ga0495586_0004388 3300046535 Bacteria 7536
159 Ga0495586_0064101 3300046535 Unclassified 2002
160 Ga0495645_0004114 3300046543 Bacteria 9933
161 Ga0495634_0000900 3300046642 Bacteria 28505
162 Ga0495635_0010693 3300046663 Bacteria 6426
163 Ga0495599_0026803 3300046678 Bacteria 3612
164 Ga0495647_0047232 3300046681 Unclassified 1661
165 Ga0495658_0023150 3300046683 Bacteria 3295
166 Ga0495658_0042304 3300046683 Unclassified 2543
167 Ga0495613_0012355 3300046689 Bacteria 6345
168 Ga0495613_0092124 3300046689 Bacteria 2195
169 Ga0495613_0148928 3300046689 Unclassified 1670
170 Ga0495624_0022430 3300046690 Bacteria 4173
171 Ga0495581_0099829 3300047315 Bacteria 1686
172 Ga0495674_0002563 3300047319 Bacteria 17713
173 Ga0495674_0004615 3300047319 Bacteria 13241
174 Ga0495680_0005227 3300047322 Bacteria 12253
175 Ga0495675_0052315 3300047444 Unclassified 2593
176 Ga0495675_0056431 3300047444 Bacteria 2490
177 Ga0495684_0108438 3300047471 Bacteria 2097
178 Ga0496107_0107689 3300048910 Bacteria 2047
179 Ga0496115_0000972 3300048918 Bacteria 20830
180 Ga0501031_0000239 3300049568 Bacteria 31192
181 Ga0501033_0001502 3300049570 Bacteria 20665
182 Ga0501083_0208108 3300049744 Bacteria 1276
183 Ga0501035_0004557 3300049822 Bacteria 13153
184 Ga0501035_0028325 3300049822 Bacteria 5114
185 Ga0501044_0000668 3300049823 Bacteria 41414
186 Ga0500568_0006365 3300053139 Bacteria 5933
187 Ga0500616_0008801 3300053153 Bacteria 6213

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046526 Ga0495666_0110024 Ga0495666_0110024_61_1278 385
2 3300009093 Ga0105240_10083609 Ga0105240_100836093 389
3 3300049744 Ga0501083_0208108 Ga0501083_0208108_40_1257 393
4 3300044712 Ga0453684_0038595 Ga0453684_0038595_5126_6418 404
5 3300049568 Ga0501031_0000239 Ga0501031_0000239_9016_10293 405
6 3300049570 Ga0501033_0001502 Ga0501033_0001502_8994_10271 405
7 3300049822 Ga0501035_0004557 Ga0501035_0004557_8656_9933 405
8 3300049823 Ga0501044_0000668 Ga0501044_0000668_31115_32392 405
9 3300046517 Ga0495630_0002119 Ga0495630_0002119_1601_2893 406
10 3300046533 Ga0495640_0055030 Ga0495640_0055030_39_1331 406
11 3300046535 Ga0495586_0000512 Ga0495586_0000512_10927_12219 406
12 3300046683 Ga0495658_0023150 Ga0495658_0023150_1776_3068 406
13 3300046689 Ga0495613_0092124 Ga0495613_0092124_803_2095 406
14 3300047319 Ga0495674_0004615 Ga0495674_0004615_10928_12220 406
15 3300048918 Ga0496115_0000972 Ga0496115_0000972_15059_16336 407
16 3300005435 Ga0070714_100003300 Ga0070714_1000033003 408
17 3300025929 Ga0207664_10004980 Ga0207664_1000498010 408
18 3300025913 Ga0207695_10222737 Ga0207695_102227371 411
19 3300005841 Ga0068863_100272328 Ga0068863_1002723281 412
20 3300044712 Ga0453684_0008855 Ga0453684_0008855_13914_15194 412
21 3300028800 Ga0265338_10044436 Ga0265338_100444362 413
22 3300025936 Ga0207670_10128533 Ga0207670_101285332 420
23 3300009176 Ga0105242_10094305 Ga0105242_100943052 422
24 3300009177 Ga0105248_10126235 Ga0105248_101262352 422
25 3300031247 Ga0265340_10000859 Ga0265340_1000085911 422
26 3300031595 Ga0265313_10046183 Ga0265313_100461833 423
27 3300028563 Ga0265319_1000007 Ga0265319_100000727 424
28 3300028800 Ga0265338_10001365 Ga0265338_1000136520 424
29 3300028800 Ga0265338_10035733 Ga0265338_100357333 424
30 3300031240 Ga0265320_10011044 Ga0265320_100110445 424
31 3300031595 Ga0265313_10009664 Ga0265313_100096646 424
32 3300005439 Ga0070711_100000512 Ga0070711_10000051212 425
33 3300005458 Ga0070681_10010296 Ga0070681_100102968 425
34 3300005530 Ga0070679_100122900 Ga0070679_1001229001 425
35 3300005544 Ga0070686_100068488 Ga0070686_1000684882 425
36 3300005563 Ga0068855_100016932 Ga0068855_1000169325 425
37 3300005563 Ga0068855_100064851 Ga0068855_1000648513 425
38 3300005563 Ga0068855_100131976 Ga0068855_1001319762 425
39 3300005563 Ga0068855_100349361 Ga0068855_1003493611 425
40 3300005614 Ga0068856_100000247 Ga0068856_10000024728 425
41 3300005617 Ga0068859_100114968 Ga0068859_1001149682 425
42 3300005841 Ga0068863_100114193 Ga0068863_1001141933 425
43 3300005842 Ga0068858_100148050 Ga0068858_1001480502 425
44 3300006931 Ga0097620_100114974 Ga0097620_1001149742 425
45 3300009551 Ga0105238_10001266 Ga0105238_1000126614 425
46 3300009551 Ga0105238_10170008 Ga0105238_101700081 425
47 3300009551 Ga0105238_10231687 Ga0105238_102316872 425
48 3300013104 Ga0157370_10018787 Ga0157370_100187878 425
49 3300013104 Ga0157370_10123216 Ga0157370_101232164 425
50 3300025913 Ga0207695_10099220 Ga0207695_100992202 425
51 3300025916 Ga0207663_10001668 Ga0207663_1000166810 425
52 3300025924 Ga0207694_10001564 Ga0207694_1000156414 425
53 3300025924 Ga0207694_10004972 Ga0207694_100049722 425
54 3300025924 Ga0207694_10178791 Ga0207694_101787911 425
55 3300025936 Ga0207670_10055614 Ga0207670_100556142 425
56 3300025949 Ga0207667_10022709 Ga0207667_100227092 425
57 3300025949 Ga0207667_10023886 Ga0207667_100238865 425
58 3300025949 Ga0207667_10094865 Ga0207667_100948652 425
59 3300026078 Ga0207702_10001127 Ga0207702_100011275 425
60 3300026088 Ga0207641_10299081 Ga0207641_102990811 425
61 3300028556 Ga0265337_1000224 Ga0265337_100022430 425
62 3300028556 Ga0265337_1003621 Ga0265337_10036212 425
63 3300028556 Ga0265337_1003664 Ga0265337_10036642 425
64 3300028558 Ga0265326_10027844 Ga0265326_100278442 425
65 3300028563 Ga0265319_1008051 Ga0265319_10080512 425
66 3300028563 Ga0265319_1008428 Ga0265319_10084282 425
67 3300028563 Ga0265319_1036178 Ga0265319_10361781 425
68 3300028573 Ga0265334_10004904 Ga0265334_100049042 425
69 3300028573 Ga0265334_10016714 Ga0265334_100167142 425
70 3300028573 Ga0265334_10018093 Ga0265334_100180931 425
71 3300028577 Ga0265318_10043959 Ga0265318_100439592 425
72 3300028653 Ga0265323_10000183 Ga0265323_1000018336 425
73 3300028653 Ga0265323_10006585 Ga0265323_100065852 425
74 3300028653 Ga0265323_10039695 Ga0265323_100396951 425
75 3300028666 Ga0265336_10000757 Ga0265336_1000075716 425
76 3300028800 Ga0265338_10000025 Ga0265338_10000025231 425
77 3300028800 Ga0265338_10000101 Ga0265338_1000010137 425
78 3300028800 Ga0265338_10000184 Ga0265338_1000018478 425
79 3300028800 Ga0265338_10000263 Ga0265338_100002635 425
80 3300028800 Ga0265338_10001733 Ga0265338_1000173326 425
81 3300028800 Ga0265338_10003616 Ga0265338_100036164 425
82 3300028800 Ga0265338_10003660 Ga0265338_1000366020 425
83 3300028800 Ga0265338_10006727 Ga0265338_100067278 425
84 3300028800 Ga0265338_10008583 Ga0265338_100085833 425
85 3300028800 Ga0265338_10010134 Ga0265338_100101345 425
86 3300028800 Ga0265338_10022151 Ga0265338_100221517 425
87 3300028800 Ga0265338_10028756 Ga0265338_100287562 425
88 3300028800 Ga0265338_10059717 Ga0265338_100597172 425
89 3300028800 Ga0265338_10083491 Ga0265338_100834912 425
90 3300028800 Ga0265338_10109255 Ga0265338_101092552 425
91 3300028800 Ga0265338_10186819 Ga0265338_101868191 425
92 3300029957 Ga0265324_10000146 Ga0265324_1000014622 425
93 3300029957 Ga0265324_10002363 Ga0265324_100023632 425
94 3300029957 Ga0265324_10011580 Ga0265324_100115802 425
95 3300031240 Ga0265320_10000296 Ga0265320_100002965 425
96 3300031240 Ga0265320_10001072 Ga0265320_100010723 425
97 3300031240 Ga0265320_10031612 Ga0265320_100316123 425
98 3300031240 Ga0265320_10069704 Ga0265320_100697041 425
99 3300031241 Ga0265325_10001910 Ga0265325_100019102 425
100 3300031241 Ga0265325_10011319 Ga0265325_100113192 425
101 3300031241 Ga0265325_10057803 Ga0265325_100578032 425
102 3300031247 Ga0265340_10025536 Ga0265340_100255361 425
103 3300031249 Ga0265339_10026223 Ga0265339_100262232 425
104 3300031251 Ga0265327_10001384 Ga0265327_100013842 425
105 3300031251 Ga0265327_10008512 Ga0265327_100085123 425
106 3300031251 Ga0265327_10067603 Ga0265327_100676031 425
107 3300031344 Ga0265316_10005083 Ga0265316_1000508312 425
108 3300031344 Ga0265316_10012135 Ga0265316_100121353 425
109 3300031344 Ga0265316_10018008 Ga0265316_100180082 425
110 3300031344 Ga0265316_10073142 Ga0265316_100731422 425
111 3300031595 Ga0265313_10001258 Ga0265313_1000125812 425
112 3300031711 Ga0265314_10002965 Ga0265314_1000296512 425
113 3300031711 Ga0265314_10090928 Ga0265314_100909281 425
114 3300035085 Ga0373929_0000256 Ga0373929_0000256_7275_8552 425
115 3300035089 Ga0373944_0000766 Ga0373944_0000766_5026_6303 425
116 3300035091 Ga0373951_0002909 Ga0373951_0002909_2863_4140 425
117 3300035112 Ga0373932_0000001 Ga0373932_0000001_1094682_1095959 425
118 3300035116 Ga0373945_0013762 Ga0373945_0013762_1349_2626 425
119 3300035118 Ga0373954_0004356 Ga0373954_0004356_2468_3745 425
120 3300035119 Ga0373956_0002799 Ga0373956_0002799_1810_3087 425
121 3300035242 Ga0373962_0000045 Ga0373962_0000045_12377_13654 425
122 3300035691 Ga0373931_0000002 Ga0373931_0000002_399439_400716 425
123 3300035695 Ga0373927_0033796 Ga0373927_0033796_55_1335 425
124 3300035695 Ga0373927_0036712 Ga0373927_0036712_1773_3050 425
125 3300035724 Ga0373933_0002939 Ga0373933_0002939_330_1607 425
126 3300036401 Ga0373937_0039061 Ga0373937_0039061_485_1762 425
127 3300036401 Ga0373937_0091934 Ga0373937_0091934_1435_2721 425
128 3300037068 Ga0373925_0004473 Ga0373925_0004473_7757_9037 425
129 3300037068 Ga0373925_0009483 Ga0373925_0009483_2664_3941 425
130 3300044712 Ga0453684_0142959 Ga0453684_0142959_895_2172 425
131 3300045051 Ga0451576_0056631 Ga0451576_0056631_1165_2442 425
132 3300046459 Ga0495629_0037759 Ga0495629_0037759_1741_3018 425
133 3300046514 Ga0495618_0014967 Ga0495618_0014967_1140_2417 425
134 3300046517 Ga0495630_0190384 Ga0495630_0190384_45_1322 425
135 3300046535 Ga0495586_0000686 Ga0495586_0000686_1400_2677 425
136 3300046642 Ga0495634_0000900 Ga0495634_0000900_21280_22557 425
137 3300046663 Ga0495635_0010693 Ga0495635_0010693_1087_2364 425
138 3300046689 Ga0495613_0012355 Ga0495613_0012355_2468_3745 425
139 3300047322 Ga0495680_0005227 Ga0495680_0005227_1268_2545 425
140 3300047444 Ga0495675_0056431 Ga0495675_0056431_1004_2290 425
141 3300047471 Ga0495684_0108438 Ga0495684_0108438_633_1910 425
142 3300049822 Ga0501035_0028325 Ga0501035_0028325_472_1749 425
143 3300053139 Ga0500568_0006365 Ga0500568_0006365_4349_5647 425
144 3300005340 Ga0070689_100024724 Ga0070689_1000247242 426
145 3300005617 Ga0068859_100030124 Ga0068859_1000301244 426
146 3300006931 Ga0097620_100030124 Ga0097620_1000301243 426
147 3300009093 Ga0105240_10013365 Ga0105240_100133655 426
148 3300014325 Ga0163163_10000153 Ga0163163_1000015346 426
149 3300014325 Ga0163163_10023155 Ga0163163_100231552 426
150 3300025936 Ga0207670_10002830 Ga0207670_100028306 426
151 3300026116 Ga0207674_10006567 Ga0207674_100065678 426
152 3300028556 Ga0265337_1000172 Ga0265337_10001729 426
153 3300028666 Ga0265336_10018371 Ga0265336_100183712 426
154 3300028800 Ga0265338_10010935 Ga0265338_100109352 426
155 3300031251 Ga0265327_10001308 Ga0265327_1000130828 426
156 3300035116 Ga0373945_0007940 Ga0373945_0007940_976_2256 426
157 3300035692 Ga0373935_0006954 Ga0373935_0006954_2353_3633 426
158 3300037068 Ga0373925_0000775 Ga0373925_0000775_3779_5059 426
159 3300042876 Ga0451577_0012160 Ga0451577_0012160_703_1983 426
160 3300042876 Ga0451577_0014985 Ga0451577_0014985_3193_4473 426
161 3300044712 Ga0453684_0002436 Ga0453684_0002436_8805_10091 426
162 3300044712 Ga0453684_0031452 Ga0453684_0031452_3579_4859 426
163 3300044712 Ga0453684_0204678 Ga0453684_0204678_797_2077 426
164 3300045051 Ga0451576_0030061 Ga0451576_0030061_1686_2966 426
165 3300045051 Ga0451576_0056263 Ga0451576_0056263_2682_3962 426
166 3300045051 Ga0451576_0445652 Ga0451576_0445652_37_1317 426
167 3300046454 Ga0495592_0000027 Ga0495592_0000027_112348_113628 426
168 3300046462 Ga0495651_0058846 Ga0495651_0058846_1534_2814 426
169 3300046476 Ga0495662_0083635 Ga0495662_0083635_249_1529 426
170 3300046477 Ga0495664_0010218 Ga0495664_0010218_346_1626 426
171 3300046514 Ga0495618_0010201 Ga0495618_0010201_4039_5319 426
172 3300046516 Ga0495628_0000349 Ga0495628_0000349_20698_21978 426
173 3300046516 Ga0495628_0105161 Ga0495628_0105161_774_2054 426
174 3300046529 Ga0495652_0019144 Ga0495652_0019144_3999_5279 426
175 3300046535 Ga0495586_0004388 Ga0495586_0004388_3430_4710 426
176 3300046535 Ga0495586_0064101 Ga0495586_0064101_103_1383 426
177 3300046543 Ga0495645_0004114 Ga0495645_0004114_5379_6659 426
178 3300046678 Ga0495599_0026803 Ga0495599_0026803_2152_3432 426
179 3300046681 Ga0495647_0047232 Ga0495647_0047232_334_1614 426
180 3300046683 Ga0495658_0042304 Ga0495658_0042304_98_1378 426
181 3300046689 Ga0495613_0148928 Ga0495613_0148928_299_1579 426
182 3300046690 Ga0495624_0022430 Ga0495624_0022430_1034_2314 426
183 3300047315 Ga0495581_0099829 Ga0495581_0099829_157_1437 426
184 3300047319 Ga0495674_0002563 Ga0495674_0002563_13108_14388 426
185 3300047444 Ga0495675_0052315 Ga0495675_0052315_1010_2290 426
186 3300048910 Ga0496107_0107689 Ga0496107_0107689_478_1758 426
187 3300053153 Ga0500616_0008801 Ga0500616_0008801_3103_4404 426

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

25

333

0.98

PF01479

S4

S4 domain

366

413

0.93

PF22421

SYY_C-terminal

Tyrosine--tRNA ligase SYY-like C-terminal domain

345

430

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2jan-assembly2.cif.gz_C tyrosyl-trna synthetase from mycobacterium tuberculosis in unliganded state 0.9132 5 426
6wn2-assembly1.cif.gz_B tyrosyl t-rna synthetase mutant from e.coli complexed with sulfotyrosine 0.9063 2 319
4ts1-assembly1.cif.gz_A crystal structure of a deletion mutant of a tyrosyl-t/rna synthetase complexed with tyrosine 0.9062 1 319
1tya-assembly1.cif.gz_E-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9056 1 319
1tyc-assembly1.cif.gz_A-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9055 1 319
ID Description Score Start End Superfamily
2pidA02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9684 241 322 1.10.240.10
2pidB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9669 240 322 1.10.240.10
3zxiB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.955 241 325 1.10.240.10
af_Q9Y2Z4_274_376_1.10.240.10 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.954 225 325 1.10.240.10
af_H2KZL6_249_348_1.10.240.10 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9479 225 322 1.10.240.10
ID Description Score Start End GO Terms
AF-A0A7X6ESF1-F1-model_v4 deleted 0.9888 248 325
AF-A0A435XF11-F1-model_v4 Tyrosine--tRNA ligase 0.9821 344 426 GO:0003723
GO:0016874
AF-A0A6P0VUA0-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) 0.9721 284 426 GO:0003723
GO:0004831
GO:0005829
GO:0043039
AF-A0A1V6DQ87-F1-model_v4 deleted 0.9713 183 426
AF-A0A350EYB3-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) 0.9667 172 426 GO:0003723
GO:0004831
GO:0005524
GO:0005829
GO:0006437

Feature Viewer

pLDDT pTM Quality
88.32 0.84 High
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Predicted Structure (AlphaFold2)

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