F288199

General Info

Members Datasets Scaffolds Average Seq Length
187 161 374 323

Family's Representative Sequence

Representative Sequence 3300046525|Ga0495663_0002026|Ga0495663_0002026_541_1629
Length 362
Sequence LNQKLKLFSNNLKPKAMFQKPTFKFQYIIEKFMVSALLLLLFNLGSLNAQKVKKTFPNNQVMESNLGTLKQIDAGVLNIGYTEAGPIDGTPVILLHGWPYDIHSYNEVVPILVSKGYRVITPYLRGSGTTRFLSEDTMRNGQQSAVASDIIALMDALKIDKAVVGGFDWGARTADIMAALWPERVKALVSVSGYLITNLEANKNPLNPVAEYGWWYQYYFSTERGEKGYTENTYEFNKLIWKLASPKWNFDKATFDQTAQSFNNPDHAAIVIHNYRWRLSLAKGESKYEDLENRLAKRPAITVPTITIASDFDGPGADGKAYANKFTGKYAHRILNGIGHNVPQEAPKAFADAIIEVDGYAK

Samples

Sample ID Description Type Environment
1 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
24 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
32 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
33 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
34 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
35 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
36 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
37 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
47 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
52 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
53 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
54 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
55 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
56 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
59 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
60 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
61 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
62 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
63 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
64 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
67 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
68 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
69 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
70 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
71 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
72 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
73 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
74 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
75 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
76 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
77 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
78 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
79 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
80 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
81 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
82 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
85 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
86 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
87 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
88 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
89 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
90 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
91 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
92 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
93 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
94 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
95 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
96 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
97 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
98 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
99 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
102 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
103 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
104 3300053089 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere Metagenome Endosphere
105 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
106 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
107 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
108 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
109 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
110 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
111 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
112 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
113 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
114 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
115 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
116 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
117 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
118 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
119 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
120 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
121 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
122 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
123 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
124 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
125 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
126 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
127 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
128 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
129 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
130 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
131 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
132 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
133 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
134 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
135 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
136 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
137 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
138 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
139 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
140 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
141 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
142 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
143 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
144 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
145 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
146 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
147 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
148 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
149 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
150 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
151 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
152 2910809715 Paenarthrobacter sp. CM16 Isolate Unclassified
153 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
154 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
155 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
156 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
157 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
158 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
159 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
160 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
161 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.68
Metatranscriptomes 0
Isolates 20.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.11
Nodule 2.67
Rhizoplane 0.53
Rhizosphere 56.15
Stem 0
Stem Tuber 0
Unclassified 0.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495663_0002026 3300046525 Bacteria 6225
2 SwRhRL2b_contig_2118511 2162886007 Bacteria 2516
3 JGI25162J39368_1001122 3300002737 Bacteria 16127
4 JGI25164J39214_1003080 3300002772 Bacteria 2225
5 JGI25165J46597_1002014 3300003214 Bacteria 7757
6 rootH1_10247311 3300003323 Bacteria 4740
7 Ga0065714_10084581 3300005288 Bacteria 2153
8 Ga0065704_10080638 3300005289 Bacteria 3910
9 Ga0065715_10101351 3300005293 Bacteria 3213
10 Ga0070676_10043350 3300005328 Bacteria 2615
11 Ga0070682_100013340 3300005337 Bacteria 4725
12 Ga0068868_100010862 3300005338 Bacteria 6608
13 Ga0070669_100304204 3300005353 Bacteria 1283
14 Ga0070693_100029300 3300005547 Bacteria 3002
15 Ga0068859_100673649 3300005617 Bacteria 1126
16 Ga0068860_100000039 3300005843 Bacteria 232543
17 Ga0068860_100001795 3300005843 Bacteria 22852
18 Ga0081455_10007485 3300005937 Bacteria 11491
19 Ga0068871_100343699 3300006358 Bacteria 1318
20 Ga0075431_100241764 3300006847 Bacteria 1836
21 Ga0075429_100157988 3300006880 Bacteria 1985
22 Ga0099824_1018462 3300006942 Bacteria 5722
23 Ga0079104_1000005 3300006946 Bacteria 407099
24 Ga0099826_10015294 3300006948 Bacteria 5797
25 Ga0105244_10000007 3300009036 Bacteria 352275
26 Ga0105240_10318776 3300009093 Bacteria 1772
27 Ga0105239_10175010 3300010375 Unclassified 2400
28 Ga0157373_10000002 3300013100 Bacteria 750094
29 Ga0157370_10001349 3300013104 Bacteria 30480
30 Ga0157369_10008455 3300013105 Bacteria 11806
31 Ga0163162_10000203 3300013306 Bacteria 54901
32 Ga0182006_1002828 3300015261 Bacteria 9252
33 Ga0182006_1003695 3300015261 Bacteria 7744
34 Ga0182006_1005290 3300015261 Bacteria 6173
35 Ga0182006_1008226 3300015261 Bacteria 4732
36 Ga0163161_10000122 3300017792 Bacteria 73118
37 Ga0213872_10000062 3300021361 Bacteria 99195
38 Ga0207427_100243 3300025231 Bacteria 43831
39 Ga0209437_100034 3300025233 Bacteria 494007
40 Ga0209233_1000038 3300025261 Bacteria 548972
41 Ga0207655_1000066 3300025728 Bacteria 246358
42 Ga0207645_10101162 3300025907 Bacteria 1859
43 Ga0207646_10169071 3300025922 Bacteria 1974
44 Ga0207681_10336071 3300025923 Bacteria 1205
45 Ga0207668_10090626 3300025972 Bacteria 2245
46 Ga0207678_10015704 3300026067 Bacteria 6653
47 Ga0207676_10314645 3300026095 Bacteria 1435
48 Ga0207675_100103381 3300026118 Bacteria 2685
49 Ga0207683_10042022 3300026121 Bacteria 3993
50 Ga0209281_1000216 3300027111 Bacteria 125724
51 Ga0209282_1030201 3300027666 Bacteria 3339
52 Ga0268264_10000080 3300028381 Bacteria 249126
53 Ga0265320_10046563 3300031240 Bacteria 2125
54 Ga0265327_10002282 3300031251 Bacteria 20612
55 Ga0265342_10030499 3300031712 Bacteria 3341
56 Ga0307405_10000002 3300031731 Bacteria 575196
57 Ga0307405_10116967 3300031731 Bacteria 1817
58 Ga0307413_10000107 3300031824 Bacteria 21411
59 Ga0307406_10000243 3300031901 Bacteria 32852
60 Ga0307406_10006848 3300031901 Bacteria 6310
61 Ga0307407_10009355 3300031903 Bacteria 4558
62 Ga0307412_10218817 3300031911 Bacteria 1458
63 Ga0307416_100002162 3300032002 Bacteria 11130
64 Ga0307414_10000002 3300032004 Bacteria 623006
65 Ga0307414_10121037 3300032004 Bacteria 2012
66 Ga0307411_10000001 3300032005 Bacteria 931810
67 Ga0307411_10527946 3300032005 Bacteria 1003
68 Ga0436361_0399221 3300039447 Bacteria 94069
69 Ga0439447_001000 3300041407 Bacteria 10331
70 Ga0439465_0000013 3300041413 Bacteria 38295
71 Ga0495627_002078 3300046453 Bacteria 10194
72 Ga0495629_0030220 3300046459 Bacteria 3842
73 Ga0495638_0019561 3300046460 Bacteria 4480
74 Ga0495638_0031575 3300046460 Bacteria 3402
75 Ga0495638_0081128 3300046460 Bacteria 1970
76 Ga0495606_0002300 3300046507 Bacteria 22573
77 Ga0495606_0029085 3300046507 Bacteria 3886
78 Ga0495616_0028254 3300046513 Bacteria 2970
79 Ga0495620_0026152 3300046515 Bacteria 2747
80 Ga0495631_0125758 3300046518 Bacteria 1102
81 Ga0495632_0001220 3300046519 Bacteria 21811
82 Ga0495663_0047648 3300046525 Bacteria 1320
83 Ga0495654_0079764 3300046530 Bacteria 1537
84 Ga0495654_0085979 3300046530 Bacteria 1466
85 Ga0495597_0155285 3300046542 Bacteria 937
86 Ga0495633_0000254 3300046558 Bacteria 63389
87 Ga0495625_0000135 3300046660 Bacteria 114867
88 Ga0495625_0040229 3300046660 Bacteria 3411
89 Ga0495670_0025061 3300046691 Bacteria 2950
90 Ga0495649_0015814 3300046694 Bacteria 4289
91 Ga0495660_0063772 3300046810 Bacteria 1971
92 Ga0495681_0033349 3300047470 Bacteria 2580
93 Ga0495686_0000136 3300047472 Bacteria 148759
94 Ga0495626_0056927 3300048091 Bacteria 1789
95 Ga0496116_0001672 3300048919 Bacteria 24354
96 Ga0496117_0138285 3300048920 Bacteria 1463
97 Ga0496117_0169860 3300048920 Bacteria 1267
98 Ga0496118_0032735 3300048921 Bacteria 4276
99 Ga0496118_0047145 3300048921 Bacteria 3344
100 Ga0496118_0136590 3300048921 Bacteria 1563
101 Ga0496119_0102039 3300048922 Bacteria 1609
102 Ga0496120_0038999 3300048923 Bacteria 2807
103 Ga0496121_0014331 3300048924 Bacteria 8424
104 Ga0496121_0034826 3300048924 Bacteria 4524
105 Ga0496121_0242038 3300048924 Bacteria 1256
106 Ga0496122_0020531 3300048925 Bacteria 5960
107 Ga0496123_0085360 3300048926 Bacteria 1899
108 Ga0496124_0019179 3300048927 Bacteria 6379
109 Ga0496124_0027085 3300048927 Bacteria 5156
110 Ga0496124_0169280 3300048927 Bacteria 1694
111 Ga0496124_0221613 3300048927 Bacteria 1422
112 Ga0496125_0000538 3300048928 Bacteria 65285
113 Ga0496125_0011562 3300048928 Bacteria 8817
114 Ga0496125_0052839 3300048928 Bacteria 3338
115 Ga0496126_0081469 3300048929 Bacteria 2861
116 Ga0501249_002848 3300049679 Bacteria 3483
117 Ga0501249_006329 3300049679 Bacteria 2434
118 Ga0501241_000004 3300049758 Bacteria 177326
119 Ga0501266_000005 3300049763 Bacteria 346750
120 Ga0501269_000432 3300049766 Bacteria 9416
121 Ga0501280_000263 3300049776 Bacteria 13318
122 nmdc:mga03683_106657_c1 3300050489 Bacteria 1235
123 nmdc:mga0yw44_126653_c1 3300050492 Bacteria 1650
124 nmdc:mga07m45_88918_c1 3300050496 Bacteria 1768
125 nmdc:mga09592_157808_c1 3300050508 Bacteria 1959
126 nmdc:mga06r32_234726_c1 3300050510 Bacteria 1822
127 Ga0500643_025320 3300053087 Bacteria 1873
128 Ga0500644_0018152 3300053088 Bacteria 2055
129 Ga0500581_092528 3300053089 Bacteria 1496
130 Ga0500641_0106254 3300053096 Bacteria 1206
131 Ga0500556_0000006 3300053104 Bacteria 453982
132 Ga0500594_0030842 3300053118 Bacteria 1410
133 Ga0500607_149961 3300053121 Bacteria 1082
134 Ga0500608_000852 3300053122 Bacteria 11037
135 Ga0500642_0000004 3300053130 Bacteria 433122
136 Ga0500652_000342 3300053131 Bacteria 16756
137 Ga0500658_0000024 3300053134 Bacteria 117952
138 Ga0500559_0002074 3300053136 Bacteria 10720
139 Ga0500559_0019372 3300053136 Bacteria 2876
140 Ga0500568_0006964 3300053139 Bacteria 5604
141 Ga0500586_000200 3300053145 Bacteria 11589
142 Ga0500604_0017288 3300053151 Bacteria 1994
143 Ga0500616_0000022 3300053153 Bacteria 460463
144 Ga0500622_0002538 3300053156 Bacteria 13099
145 Ga0500624_001556 3300053157 Bacteria 3557
146 Ga0500633_0006767 3300053160 Bacteria 2836
147 Ga0500634_0063884 3300053161 Bacteria 1946
148 Ga0500636_0022666 3300053177 Bacteria 3712
149 Ga0500645_041755 3300053730 Bacteria 1354
150 2511232424 2511231000 Bacteria 4488346
151 2520879006 2519899754 Bacteria 5336938
152 2585158052 2582581281 Bacteria 4487904
153 2585161371 2582581282 Bacteria 4495830
154 2588232069 2585428187 Bacteria 4629388
155 2603858610 2602042107 Bacteria 6226103
156 2644008480 2643221600 Bacteria 5530138
157 2644684984 2643221725 Bacteria 5087956
158 2738734472 2738541279 Bacteria 6149495
159 2738767231 2738541285 Bacteria 6150075
160 2739216054 2738543007 Bacteria 6149845
161 2740000991 2739367857 Bacteria 5433684
162 2740005807 2739367858 Bacteria 5432813
163 2740059763 2739367874 Bacteria 4872888
164 2775674924 2775506739 Bacteria 3855222
165 2802653906 2802428842 Bacteria 4926114
166 2817415984 2816332280 Bacteria 5109718
167 2857526265 2857524615 Bacteria 6615449
168 2857617327 2857613821 Bacteria 4917088
169 2857618254 2857618242 Bacteria 5635925
170 2857729935 2857729791 Bacteria 4040535
171 2857739298 2857737099 Bacteria 3104305
172 2857744547 2857740372 Bacteria 4782044
173 2893067463 2893066018 Bacteria 6158120
174 2903897252 2903895155 Bacteria 5258610
175 2904420763 2904419702 Bacteria 5166287
176 2904501235 2904497146 Bacteria 4731781
177 2904559316 2904555929 Bacteria 5218588
178 2910812694 2910809715 Bacteria 4982797
179 2919073882 2919073203 Bacteria 6531949
180 2929153863 2929150217 Bacteria 5462483
181 2933421981 2933418574 Bacteria 4476724
182 2945925393 2945924605 Bacteria 4296724
183 2958460700 2958458903 Bacteria 5301041
184 2977269989 2977268062 Bacteria 5243061
185 8055421707 8055419101 Bacteria 5289643
186 8055593859 8055592153 Bacteria 5961247
187 8056040528 8056037122 Bacteria 3854319
188 Ga0495663_0002026
189 SwRhRL2b_contig_2118511
190 JGI25162J39368_1001122
191 JGI25164J39214_1003080
192 JGI25165J46597_1002014
193 rootH1_10247311
194 Ga0065714_10084581
195 Ga0065704_10080638
196 Ga0065715_10101351
197 Ga0070676_10043350
198 Ga0070682_100013340
199 Ga0068868_100010862
200 Ga0070669_100304204
201 Ga0070693_100029300
202 Ga0068859_100673649
203 Ga0068860_100000039
204 Ga0068860_100001795
205 Ga0081455_10007485
206 Ga0068871_100343699
207 Ga0075431_100241764
208 Ga0075429_100157988
209 Ga0099824_1018462
210 Ga0079104_1000005
211 Ga0099826_10015294
212 Ga0105244_10000007
213 Ga0105240_10318776
214 Ga0105239_10175010
215 Ga0157373_10000002
216 Ga0157370_10001349
217 Ga0157369_10008455
218 Ga0163162_10000203
219 Ga0182006_1002828
220 Ga0182006_1003695
221 Ga0182006_1005290
222 Ga0182006_1008226
223 Ga0163161_10000122
224 Ga0213872_10000062
225 Ga0207427_100243
226 Ga0209437_100034
227 Ga0209233_1000038
228 Ga0207655_1000066
229 Ga0207645_10101162
230 Ga0207646_10169071
231 Ga0207681_10336071
232 Ga0207668_10090626
233 Ga0207678_10015704
234 Ga0207676_10314645
235 Ga0207675_100103381
236 Ga0207683_10042022
237 Ga0209281_1000216
238 Ga0209282_1030201
239 Ga0268264_10000080
240 Ga0265320_10046563
241 Ga0265327_10002282
242 Ga0265342_10030499
243 Ga0307405_10000002
244 Ga0307405_10116967
245 Ga0307413_10000107
246 Ga0307406_10000243
247 Ga0307406_10006848
248 Ga0307407_10009355
249 Ga0307412_10218817
250 Ga0307416_100002162
251 Ga0307414_10000002
252 Ga0307414_10121037
253 Ga0307411_10000001
254 Ga0307411_10527946
255 Ga0436361_0399221
256 Ga0439447_001000
257 Ga0439465_0000013
258 Ga0495627_002078
259 Ga0495629_0030220
260 Ga0495638_0019561
261 Ga0495638_0031575
262 Ga0495638_0081128
263 Ga0495606_0002300
264 Ga0495606_0029085
265 Ga0495616_0028254
266 Ga0495620_0026152
267 Ga0495631_0125758
268 Ga0495632_0001220
269 Ga0495663_0047648
270 Ga0495654_0079764
271 Ga0495654_0085979
272 Ga0495597_0155285
273 Ga0495633_0000254
274 Ga0495625_0000135
275 Ga0495625_0040229
276 Ga0495670_0025061
277 Ga0495649_0015814
278 Ga0495660_0063772
279 Ga0495681_0033349
280 Ga0495686_0000136
281 Ga0495626_0056927
282 Ga0496116_0001672
283 Ga0496117_0138285
284 Ga0496117_0169860
285 Ga0496118_0032735
286 Ga0496118_0047145
287 Ga0496118_0136590
288 Ga0496119_0102039
289 Ga0496120_0038999
290 Ga0496121_0014331
291 Ga0496121_0034826
292 Ga0496121_0242038
293 Ga0496122_0020531
294 Ga0496123_0085360
295 Ga0496124_0019179
296 Ga0496124_0027085
297 Ga0496124_0169280
298 Ga0496124_0221613
299 Ga0496125_0000538
300 Ga0496125_0011562
301 Ga0496125_0052839
302 Ga0496126_0081469
303 Ga0501249_002848
304 Ga0501249_006329
305 Ga0501241_000004
306 Ga0501266_000005
307 Ga0501269_000432
308 Ga0501280_000263
309 nmdc:mga03683_106657_c1
310 nmdc:mga0yw44_126653_c1
311 nmdc:mga07m45_88918_c1
312 nmdc:mga09592_157808_c1
313 nmdc:mga06r32_234726_c1
314 Ga0500643_025320
315 Ga0500644_0018152
316 Ga0500581_092528
317 Ga0500641_0106254
318 Ga0500556_0000006
319 Ga0500594_0030842
320 Ga0500607_149961
321 Ga0500608_000852
322 Ga0500642_0000004
323 Ga0500652_000342
324 Ga0500658_0000024
325 Ga0500559_0002074
326 Ga0500559_0019372
327 Ga0500568_0006964
328 Ga0500586_000200
329 Ga0500604_0017288
330 Ga0500616_0000022
331 Ga0500622_0002538
332 Ga0500624_001556
333 Ga0500633_0006767
334 Ga0500634_0063884
335 Ga0500636_0022666
336 Ga0500645_041755
337 2511232424
338 2520879006
339 2585158052
340 2585161371
341 2588232069
342 2603858610
343 2644008480
344 2644684984
345 2738734472
346 2738767231
347 2739216054
348 2740000991
349 2740005807
350 2740059763
351 2775674924
352 2802653906
353 2817415984
354 2857526265
355 2857617327
356 2857618254
357 2857729935
358 2857739298
359 2857744547
360 2893067463
361 2903897252
362 2904420763
363 2904501235
364 2904559316
365 2910812694
366 2919073882
367 2929153863
368 2933421981
369 2945925393
370 2958460700
371 2977269989
372 8055421707
373 8055593859
374 8056040528

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00561

Abhydrolase_1

alpha/beta hydrolase fold

90

225

0.93

PF12697

Abhydrolase_6

Alpha/beta hydrolase family

92

353

0.6

Structural Annotation

Top 5 Hits

ID Description Score Start End
5bov-assembly2.cif.gz_B crystal structure of a putative epoxide hydrolase (kpn_01808) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.60 a resolution 0.9724 42 340
5bov-assembly2.cif.gz_B crystal structure of a putative epoxide hydrolase (kpn_01808) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.60 a resolution 0.9598 42 340
7jqx-assembly1.cif.gz_A crystal structure of cfl1 wild-type from burkholderia cenocepacia 0.8691 49 337
8sdc-assembly1.cif.gz_A crystal structure of fluoroacetate dehalogenase daro3835 apoenzyme 0.8602 46 343
4nvr-assembly2.cif.gz_D 2.22 angstrom resolution crystal structure of a putative acyltransferase from salmonella enterica 0.8596 50 343
ID Description Score Start End Superfamily
5bovA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9715 44 340 3.40.50.1820
5bovA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9619 44 340 3.40.50.1820
af_A0A0R0KMM0_1_93_3.40.50.12270 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9114 49 141 3.40.50.12270
af_A0A0R0KMM0_1_93_3.40.50.12270 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8647 49 141 3.40.50.12270
af_I1KMX1_1_216_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.8577 47 190 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A1H3G878-F1-model_v4 Alpha/beta hydrolase fold 0.9987 51 145 GO:0016787
AF-S3HT09-F1-model_v4 Dehalogenase/hydrolase 0.9893 182 285 GO:0016787
AF-A0A0M8WLF0-F1-model_v4 Alpha/beta hydrolase 0.9861 109 265 GO:0016787
AF-A0A366KLG2-F1-model_v4 Alpha/beta hydrolase 0.986 43 342 GO:0016020
GO:0046464
GO:0047372
AF-A0A529Y2I4-F1-model_v4 Alpha/beta fold hydrolase 0.9857 50 143 GO:0016020
GO:0016787

Map