F288205

General Info

Members Datasets Scaffolds Average Seq Length
187 132 374 351

Family's Representative Sequence

Representative Sequence 3300046535|Ga0495586_0009393|Ga0495586_0009393_2451_3671
Length 399
Sequence MRPVEISNPPNPWATTEIEYLEGAPEVKLTVLADQSRQILAKNDSPDVGFTYSVNPYRGCFHACAYCYARPSHEYLSLGAGTDFDRKIVVKLRAAELLRAAFSKKSWRRETVVFSGVTDCYQPLEASYRLTRACLEVCVAFANPAAIITKSPLIERDLDVLRELARVASVFVTVSVPFWDQERARAIEPYVATPARRLRTIETLARAGLSVGVNVAPIIPGLNDQDIPKILAAARDAGATRAGCVLVRLPGSVKQVFEERLRAALPLTVDRVLHRIRETRGGRLYDPRFGTRGRGEGTYAEMIRMLFETTAARLGFDQERNPGMGSAPPAMSSGHASGMEMGDSANDGAGSGNVEDVEDDRQAPVAKREARAGSQAQLSLDLEPGRRDDRGAPAAKVRP

Samples

Sample ID Description Type Environment
1 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
15 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
63 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
64 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
65 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
66 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
72 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
73 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
74 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
75 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
76 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
77 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
78 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
79 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
80 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
81 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
82 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
83 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
84 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
87 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
88 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
89 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
90 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
91 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
92 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
95 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
99 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
113 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
114 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
115 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
116 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
117 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
118 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
119 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
120 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
121 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
122 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
123 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
124 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
127 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
128 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
131 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
132 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.21
Rhizosphere 95.19
Stem 0
Stem Tuber 0
Unclassified 1.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495586_0009393 3300046535 Bacteria 5205
2 Ga0068869_100050142 3300005334 Bacteria 3025
3 Ga0070689_100190490 3300005340 Bacteria 1670
4 Ga0070689_100217020 3300005340 Bacteria 1568
5 Ga0070669_100014210 3300005353 Bacteria 5665
6 Ga0070674_100010090 3300005356 Bacteria 5690
7 Ga0070701_10066475 3300005438 Bacteria 1916
8 Ga0070700_100005778 3300005441 Bacteria 6568
9 Ga0070708_100000393 3300005445 Bacteria 33119
10 Ga0070708_100001412 3300005445 Bacteria 18343
11 Ga0070678_100015886 3300005456 Bacteria 4797
12 Ga0070706_100000049 3300005467 Bacteria 141287
13 Ga0070706_100010054 3300005467 Bacteria 8787
14 Ga0070707_100003684 3300005468 Bacteria 14453
15 Ga0070707_100126830 3300005468 Bacteria 2480
16 Ga0070698_100006023 3300005471 Bacteria 13207
17 Ga0070699_100196082 3300005518 Bacteria 1795
18 Ga0070699_100196498 3300005518 Bacteria 1793
19 Ga0070697_100002559 3300005536 Bacteria 14001
20 Ga0070697_100003633 3300005536 Bacteria 11847
21 Ga0070697_100011765 3300005536 Bacteria 6845
22 Ga0070672_100013693 3300005543 Bacteria 5734
23 Ga0070672_100128875 3300005543 Bacteria 2078
24 Ga0070665_100198706 3300005548 Bacteria 2006
25 Ga0068856_100414705 3300005614 Bacteria 1367
26 Ga0070702_100092710 3300005615 Bacteria 1835
27 Ga0068859_100027188 3300005617 Bacteria 5739
28 Ga0068859_100070877 3300005617 Bacteria 3521
29 Ga0068864_100155371 3300005618 Bacteria 2076
30 Ga0068861_100007777 3300005719 Bacteria 7365
31 Ga0068858_100048178 3300005842 Bacteria 3949
32 Ga0068860_100044275 3300005843 Bacteria 4242
33 Ga0068862_100043961 3300005844 Bacteria 3810
34 Ga0075428_100014384 3300006844 Bacteria 8794
35 Ga0075428_100023588 3300006844 Bacteria 6812
36 Ga0075431_100138096 3300006847 Bacteria 2513
37 Ga0097620_100027188 3300006931 Bacteria 5739
38 Ga0097620_100070881 3300006931 Bacteria 3521
39 Ga0075435_100050738 3300007076 Bacteria 3340
40 Ga0099794_10000009 3300007265 Bacteria 92040
41 Ga0111539_10012319 3300009094 Bacteria 10715
42 Ga0111539_10012944 3300009094 Bacteria 10440
43 Ga0111539_10071259 3300009094 Bacteria 4101
44 Ga0111539_10273817 3300009094 Bacteria 1965
45 Ga0105245_10025774 3300009098 Bacteria 5171
46 Ga0114129_10208759 3300009147 Bacteria 2641
47 Ga0157369_10160518 3300013105 Bacteria 2373
48 Ga0157374_10432579 3300013296 Bacteria 1316
49 Ga0157378_10037117 3300013297 Bacteria 4315
50 Ga0157376_10163321 3300014969 Bacteria 2021
51 Ga0213876_10009266 3300021384 Bacteria 5303
52 Ga0207645_10011122 3300025907 Bacteria 6157
53 Ga0207684_10000011 3300025910 Bacteria 502991
54 Ga0207684_10000334 3300025910 Bacteria 65725
55 Ga0207684_10001332 3300025910 Bacteria 27104
56 Ga0207684_10144560 3300025910 Bacteria 2045
57 Ga0207707_10348590 3300025912 Bacteria 1276
58 Ga0207662_10032355 3300025918 Bacteria 3044
59 Ga0207681_10023020 3300025923 Bacteria 3978
60 Ga0207670_10015699 3300025936 Bacteria 4531
61 Ga0207669_10010581 3300025937 Bacteria 4445
62 Ga0207691_10022821 3300025940 Bacteria 5899
63 Ga0207691_10101350 3300025940 Bacteria 2569
64 Ga0207689_10169305 3300025942 Bacteria 1800
65 Ga0207661_10026101 3300025944 Bacteria 4448
66 Ga0207667_10029161 3300025949 Bacteria 5985
67 Ga0207651_10027518 3300025960 Bacteria 3572
68 Ga0207651_10227690 3300025960 Bacteria 1511
69 Ga0207668_10094416 3300025972 Bacteria 2205
70 Ga0207639_10131444 3300026041 Bacteria 2073
71 Ga0207708_10014305 3300026075 Bacteria 5935
72 Ga0207641_10142181 3300026088 Bacteria 2166
73 Ga0207676_10148855 3300026095 Bacteria 2014
74 Ga0207674_10390883 3300026116 Bacteria 1344
75 Ga0207675_100010343 3300026118 Bacteria 8744
76 Ga0207683_10001883 3300026121 Bacteria 18564
77 Ga0207683_10026768 3300026121 Bacteria 4981
78 Ga0209588_1000012 3300027671 Bacteria 141363
79 Ga0207428_10014331 3300027907 Bacteria 6897
80 Ga0207428_10025311 3300027907 Bacteria 4967
81 Ga0207428_10048460 3300027907 Bacteria 3408
82 Ga0268266_10035359 3300028379 Bacteria 4250
83 Ga0268265_10285611 3300028380 Bacteria 1478
84 Ga0265318_10000728 3300028577 Bacteria 22064
85 Ga0265328_10077005 3300031239 Bacteria 1228
86 Ga0265320_10054935 3300031240 Bacteria 1919
87 Ga0265325_10002986 3300031241 Bacteria 11225
88 Ga0265340_10001923 3300031247 Bacteria 11870
89 Ga0265339_10030045 3300031249 Bacteria 3079
90 Ga0265339_10064524 3300031249 Bacteria 1965
91 Ga0265316_10000955 3300031344 Bacteria 31522
92 Ga0265313_10000972 3300031595 Bacteria 28338
93 Ga0265314_10000440 3300031711 Bacteria 55588
94 Ga0265314_10002842 3300031711 Bacteria 17232
95 Ga0265314_10008913 3300031711 Bacteria 8556
96 Ga0265314_10028390 3300031711 Bacteria 4173
97 Ga0265342_10002381 3300031712 Bacteria 16285
98 Ga0373950_0000046 3300034818 Bacteria 97127
99 Ga0373934_0017880 3300035086 Bacteria 2709
100 Ga0373934_0108910 3300035086 Bacteria 1123
101 Ga0373944_0033715 3300035089 Bacteria 1553
102 Ga0373953_0029977 3300035117 Bacteria 2107
103 Ga0373954_0050536 3300035118 Bacteria 1951
104 Ga0373957_0038288 3300035120 Bacteria 1795
105 Ga0373943_0006451 3300035170 Bacteria 5270
106 Ga0316574_0009925 3300035398 Bacteria 5355
107 Ga0373931_0100000 3300035691 Bacteria 1630
108 Ga0373927_0002367 3300035695 Bacteria 13733
109 Ga0373933_0000603 3300035724 Bacteria 22437
110 Ga0373933_0112182 3300035724 Bacteria 1702
111 Ga0373937_0008237 3300036401 Bacteria 9051
112 Ga0373937_0078693 3300036401 Bacteria 3047
113 Ga0373925_0002766 3300037068 Bacteria 13876
114 Ga0395900_0050459 3300037418 Bacteria 4285
115 Ga0395898_0158875 3300037466 Bacteria 2162
116 Ga0436365_0313751 3300039437 Bacteria 1882
117 Ga0436365_1424726 3300039437 Bacteria 5312
118 Ga0495580_0001514 3300046472 Bacteria 20428
119 Ga0495585_0048659 3300046492 Bacteria 2357
120 Ga0495608_0013043 3300046511 Bacteria 5766
121 Ga0495628_0369394 3300046516 Bacteria 1052
122 Ga0495634_0005122 3300046642 Bacteria 10116
123 Ga0495635_0164022 3300046663 Bacteria 1512
124 Ga0495636_0007837 3300047318 Bacteria 4204
125 Ga0496100_0002734 3300048903 Bacteria 9014
126 Ga0496104_0143491 3300048907 Bacteria 2294
127 Ga0496114_0001739 3300048917 Bacteria 16531
128 Ga0496114_0092735 3300048917 Bacteria 2566
129 Ga0496115_0003785 3300048918 Bacteria 10879
130 Ga0496115_0136687 3300048918 Bacteria 2021
131 Ga0501031_0005266 3300049568 Bacteria 8432
132 Ga0501032_0019100 3300049569 Bacteria 4796
133 Ga0501034_0000037 3300049571 Bacteria 239254
134 Ga0501036_0044001 3300049572 Bacteria 3781
135 Ga0501036_0152566 3300049572 Bacteria 1949
136 Ga0501036_0243221 3300049572 Bacteria 1509
137 Ga0501037_0059301 3300049573 Bacteria 2792
138 Ga0501037_0081779 3300049573 Bacteria 2341
139 Ga0501039_0000098 3300049575 Bacteria 60633
140 Ga0501039_0012182 3300049575 Bacteria 6555
141 Ga0501040_0034062 3300049576 Unclassified 3451
142 Ga0501041_0121230 3300049577 Bacteria 1625
143 Ga0501042_0065808 3300049578 Bacteria 2590
144 Ga0501043_0002804 3300049579 Bacteria 14568
145 Ga0501046_0014759 3300049580 Bacteria 6575
146 Ga0501046_0131564 3300049580 Bacteria 1897
147 Ga0501047_0000009 3300049581 Bacteria 436619
148 Ga0501048_0002244 3300049582 Bacteria 14728
149 Ga0501048_0007184 3300049582 Bacteria 8457
150 Ga0501067_0000555 3300049583 Bacteria 20216
151 Ga0501068_0005308 3300049584 Bacteria 7039
152 Ga0501069_0011640 3300049585 Bacteria 4664
153 Ga0501069_0118265 3300049585 Bacteria 1512
154 Ga0501070_0000196 3300049586 Bacteria 56282
155 Ga0501070_0012958 3300049586 Bacteria 7027
156 Ga0501072_0000106 3300049588 Bacteria 62199
157 Ga0501073_0003407 3300049589 Bacteria 11959
158 Ga0501073_0015443 3300049589 Bacteria 5539
159 Ga0501073_0068429 3300049589 Bacteria 2474
160 Ga0501074_0009285 3300049590 Bacteria 7142
161 Ga0501074_0034156 3300049590 Bacteria 3687
162 Ga0501074_0132702 3300049590 Bacteria 1781
163 Ga0501075_0160025 3300049591 Bacteria 1717
164 Ga0501076_0081059 3300049592 Bacteria 2605
165 Ga0501077_0050099 3300049593 Bacteria 2654
166 Ga0501079_0000841 3300049741 Bacteria 20908
167 Ga0501079_0093539 3300049741 Bacteria 2329
168 Ga0501080_0017988 3300049742 Bacteria 6543
169 Ga0501080_0077205 3300049742 Bacteria 3097
170 Ga0501080_0421976 3300049742 Bacteria 1198
171 Ga0501083_0010998 3300049744 Bacteria 6361
172 Ga0501083_0011327 3300049744 Bacteria 6255
173 Ga0501035_0000464 3300049822 Bacteria 45410
174 Ga0501035_0037906 3300049822 Bacteria 4364
175 nmdc:mga05p37_382492_c1 3300050507 Unclassified 1649
176 nmdc:mga06r32_59686_c1 3300050510 Unclassified 3669
177 nmdc:mga08y16_17644_c1 3300050511 Bacteria 7518
178 nmdc:mga08y16_208862_c1 3300050511 Bacteria 2022
179 nmdc:mga08y16_3202_c1 3300050511 Bacteria 16936
180 nmdc:mga08y16_366454_c1 3300050511 Bacteria 1478
181 nmdc:mga08y16_78411_c1 3300050511 Bacteria 3444
182 nmdc:mga0rr50_43981_c1 3300050513 Bacteria 3272
183 Ga0495619_0031031 3300053085 Bacteria 3461
184 Ga0501084_0000006 3300054114 Bacteria 234041
185 Ga0501084_0205781 3300054114 Bacteria 1661
186 Ga0501082_0001875 3300060353 Bacteria 18501
187 Ga0501082_0028462 3300060353 Bacteria 4813
188 Ga0495586_0009393
189 Ga0068869_100050142
190 Ga0070689_100190490
191 Ga0070689_100217020
192 Ga0070669_100014210
193 Ga0070674_100010090
194 Ga0070701_10066475
195 Ga0070700_100005778
196 Ga0070708_100000393
197 Ga0070708_100001412
198 Ga0070678_100015886
199 Ga0070706_100000049
200 Ga0070706_100010054
201 Ga0070707_100003684
202 Ga0070707_100126830
203 Ga0070698_100006023
204 Ga0070699_100196082
205 Ga0070699_100196498
206 Ga0070697_100002559
207 Ga0070697_100003633
208 Ga0070697_100011765
209 Ga0070672_100013693
210 Ga0070672_100128875
211 Ga0070665_100198706
212 Ga0068856_100414705
213 Ga0070702_100092710
214 Ga0068859_100027188
215 Ga0068859_100070877
216 Ga0068864_100155371
217 Ga0068861_100007777
218 Ga0068858_100048178
219 Ga0068860_100044275
220 Ga0068862_100043961
221 Ga0075428_100014384
222 Ga0075428_100023588
223 Ga0075431_100138096
224 Ga0097620_100027188
225 Ga0097620_100070881
226 Ga0075435_100050738
227 Ga0099794_10000009
228 Ga0111539_10012319
229 Ga0111539_10012944
230 Ga0111539_10071259
231 Ga0111539_10273817
232 Ga0105245_10025774
233 Ga0114129_10208759
234 Ga0157369_10160518
235 Ga0157374_10432579
236 Ga0157378_10037117
237 Ga0157376_10163321
238 Ga0213876_10009266
239 Ga0207645_10011122
240 Ga0207684_10000011
241 Ga0207684_10000334
242 Ga0207684_10001332
243 Ga0207684_10144560
244 Ga0207707_10348590
245 Ga0207662_10032355
246 Ga0207681_10023020
247 Ga0207670_10015699
248 Ga0207669_10010581
249 Ga0207691_10022821
250 Ga0207691_10101350
251 Ga0207689_10169305
252 Ga0207661_10026101
253 Ga0207667_10029161
254 Ga0207651_10027518
255 Ga0207651_10227690
256 Ga0207668_10094416
257 Ga0207639_10131444
258 Ga0207708_10014305
259 Ga0207641_10142181
260 Ga0207676_10148855
261 Ga0207674_10390883
262 Ga0207675_100010343
263 Ga0207683_10001883
264 Ga0207683_10026768
265 Ga0209588_1000012
266 Ga0207428_10014331
267 Ga0207428_10025311
268 Ga0207428_10048460
269 Ga0268266_10035359
270 Ga0268265_10285611
271 Ga0265318_10000728
272 Ga0265328_10077005
273 Ga0265320_10054935
274 Ga0265325_10002986
275 Ga0265340_10001923
276 Ga0265339_10030045
277 Ga0265339_10064524
278 Ga0265316_10000955
279 Ga0265313_10000972
280 Ga0265314_10000440
281 Ga0265314_10002842
282 Ga0265314_10008913
283 Ga0265314_10028390
284 Ga0265342_10002381
285 Ga0373950_0000046
286 Ga0373934_0017880
287 Ga0373934_0108910
288 Ga0373944_0033715
289 Ga0373953_0029977
290 Ga0373954_0050536
291 Ga0373957_0038288
292 Ga0373943_0006451
293 Ga0316574_0009925
294 Ga0373931_0100000
295 Ga0373927_0002367
296 Ga0373933_0000603
297 Ga0373933_0112182
298 Ga0373937_0008237
299 Ga0373937_0078693
300 Ga0373925_0002766
301 Ga0395900_0050459
302 Ga0395898_0158875
303 Ga0436365_0313751
304 Ga0436365_1424726
305 Ga0495580_0001514
306 Ga0495585_0048659
307 Ga0495608_0013043
308 Ga0495628_0369394
309 Ga0495634_0005122
310 Ga0495635_0164022
311 Ga0495636_0007837
312 Ga0496100_0002734
313 Ga0496104_0143491
314 Ga0496114_0001739
315 Ga0496114_0092735
316 Ga0496115_0003785
317 Ga0496115_0136687
318 Ga0501031_0005266
319 Ga0501032_0019100
320 Ga0501034_0000037
321 Ga0501036_0044001
322 Ga0501036_0152566
323 Ga0501036_0243221
324 Ga0501037_0059301
325 Ga0501037_0081779
326 Ga0501039_0000098
327 Ga0501039_0012182
328 Ga0501040_0034062
329 Ga0501041_0121230
330 Ga0501042_0065808
331 Ga0501043_0002804
332 Ga0501046_0014759
333 Ga0501046_0131564
334 Ga0501047_0000009
335 Ga0501048_0002244
336 Ga0501048_0007184
337 Ga0501067_0000555
338 Ga0501068_0005308
339 Ga0501069_0011640
340 Ga0501069_0118265
341 Ga0501070_0000196
342 Ga0501070_0012958
343 Ga0501072_0000106
344 Ga0501073_0003407
345 Ga0501073_0015443
346 Ga0501073_0068429
347 Ga0501074_0009285
348 Ga0501074_0034156
349 Ga0501074_0132702
350 Ga0501075_0160025
351 Ga0501076_0081059
352 Ga0501077_0050099
353 Ga0501079_0000841
354 Ga0501079_0093539
355 Ga0501080_0017988
356 Ga0501080_0077205
357 Ga0501080_0421976
358 Ga0501083_0010998
359 Ga0501083_0011327
360 Ga0501035_0000464
361 Ga0501035_0037906
362 nmdc:mga05p37_382492_c1
363 nmdc:mga06r32_59686_c1
364 nmdc:mga08y16_17644_c1
365 nmdc:mga08y16_208862_c1
366 nmdc:mga08y16_3202_c1
367 nmdc:mga08y16_366454_c1
368 nmdc:mga08y16_78411_c1
369 nmdc:mga0rr50_43981_c1
370 Ga0495619_0031031
371 Ga0501084_0000006
372 Ga0501084_0205781
373 Ga0501082_0001875
374 Ga0501082_0028462

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

54

234

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2fb2-assembly1.cif.gz_B structure of the moaa arg17/266/268/ala triple mutant 0.774 119 252
1tv8-assembly1.cif.gz_A structure of moaa in complex with s-adenosylmethionine 0.7085 104 267
6b4c-assembly1.cif.gz_A structure of viperin from trichoderma virens 0.7084 107 252
4fhd-assembly1.cif.gz_A spore photoproduct lyase complexed with dinucleoside spore photoproduct 0.7081 37 324
4rh1-assembly1.cif.gz_A spore photoproduct lyase c140a/s76c mutant with bound adomet and dinucleoside spore photoproduct 0.6984 37 324
ID Description Score Start End Superfamily
af_P9WL79_106_315_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.8364 103 322 3.80.30.30
af_P9WL79_106_315_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.8146 103 322 3.80.30.30
af_P9WJS1_27_360_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7615 98 252 3.20.20.70
af_Q58096_62_257_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.7551 104 284 3.80.30.30
af_P0ADW6_41_234_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7151 103 270 3.80.30.20
ID Description Score Start End GO Terms
AF-A0A537RJT8-F1-model_v4 Radical SAM protein 0.9509 133 256 GO:0003824
GO:0046872
GO:0051536
AF-A0A537RJT8-F1-model_v4 Radical SAM protein 0.9435 133 256 GO:0003824
GO:0046872
GO:0051536
AF-A0A426GCG6-F1-model_v4 Radical SAM protein 0.9405 154 247 GO:0003824
GO:0046872
GO:0051536
AF-A0A059WTM7-F1-model_v4 Radical SAM core domain-containing protein 0.9354 131 329 GO:0003824
GO:0046872
GO:0051536
AF-A0A2N8GSW5-F1-model_v4 deleted 0.9319 184 279

Map