F288396

General Info

Members Datasets Scaffolds Average Seq Length
187 146 374 376

Family's Representative Sequence

Representative Sequence 3300049592|Ga0501076_0070289|Ga0501076_0070289_1423_2619
Length 398
Sequence MSEQTSQGTTPEPAFQPQIFKGLAGVPVDYTAISKVNPETNSLLYRGYPVQELAASVTFEEVAYLLWYGELPDDTQLAEFEELERSLRGLDHVTKRIVDELPLTAHPMDVVRTAVSVIGGSDPMTPDDSREANLEKSVRLFAKLPSIITYDQRRRHDLEFVEPRADLGYSANFLWQAFGEAPELEVVNAFDTSMILYAEHSFNASTFTARVIASTLSDLYSAVVGAIGALKGPLHGGANEAVMHAFDEIGAGEGSAERATAWLDAALAEKRKIMGFGHRVYKHGDSRVPTMRDALERMVEHYDRPDLLELYTALEQGMAERKNILPNLDYPAGPTYHLMGFDTATFTPLFVASRVTGWTAHVMEQLASNALIRPLSVYDGPDERHVPPRGNASGEPAA

Samples

Sample ID Description Type Environment
1 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
9 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
10 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
11 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
12 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
13 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
14 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
15 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
16 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
24 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
25 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
26 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
27 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
28 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
29 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
30 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
32 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
41 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
48 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
49 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
50 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
51 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
52 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
61 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
62 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
63 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
64 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
65 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
66 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
67 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
68 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
69 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
70 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
71 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
72 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
73 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
74 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
75 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
76 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
77 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
80 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
83 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
84 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
85 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
86 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
87 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
88 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
89 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
95 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
98 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
99 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
100 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
101 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
102 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
103 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
104 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
105 2643221546 Microbacterium sp. Root53 Isolate Unclassified
106 2643221549 Agromyces sp. Root1464 Isolate Unclassified
107 2643221572 Leifsonia sp. Root60 Isolate Unclassified
108 2643221597 Microbacterium sp. Root180 Isolate Unclassified
109 2643221619 Agromyces sp. Root81 Isolate Unclassified
110 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
111 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
112 2643221649 Leifsonia sp. Root4 Isolate Unclassified
113 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
114 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
115 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
116 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
117 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
118 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
119 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
120 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
121 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
122 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
123 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
124 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
125 2808606372 Agromyces sp. 23-23 Isolate Unclassified
126 2808606394 Promicromonospora sp. C35 Isolate Unclassified
127 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
128 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
129 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
130 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
131 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
132 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
133 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
134 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
135 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
136 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
137 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
138 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
139 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
140 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
141 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
142 2928153084 Leifsonia sp. 563 Isolate Unclassified
143 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
144 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
145 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
146 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.87
Metatranscriptomes 2.14
Isolates 22.99

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.65
Nodule 0
Rhizoplane 7.49
Rhizosphere 54.01
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501076_0070289 3300049592 Bacteria 2799
2 JGI24740J21852_10004782 3300001979 Bacteria 5776
3 JGI24740J21852_10008354 3300001979 Bacteria 4130
4 JGI24739J22299_10009325 3300001989 Bacteria 3659
5 JGI24737J22298_10015732 3300001990 Bacteria 2447
6 JGI24735J21928_10008373 3300002067 Bacteria 3346
7 JGI25152J39213_1000137 3300002773 Bacteria 50117
8 Ga0006562J51391_1012772 3300003578 Bacteria 30815
9 Ga0006562J51391_1012774 3300003578 Bacteria 16510
10 Ga0055539_1000060 3300003752 Bacteria 146006
11 Ga0055533_1000002 3300003756 Bacteria 1196393
12 Ga0055532_1003482 3300003758 Bacteria 2678
13 Ga0055525_1000142 3300003759 Bacteria 100877
14 Ga0055525_1003097 3300003759 Bacteria 1532
15 Ga0055527_1000004 3300003760 Bacteria 570634
16 Ga0055542_1000307 3300003762 Bacteria 53734
17 Ga0055529_1000008 3300003763 Bacteria 394786
18 Ga0055540_1000060 3300003792 Bacteria 131775
19 Ga0055541_1001945 3300003841 Bacteria 4262
20 Ga0070707_100041087 3300005468 Bacteria 4425
21 Ga0070664_100231598 3300005564 Bacteria 1656
22 Ga0068856_100354326 3300005614 Bacteria 1486
23 Ga0070702_100181398 3300005615 Bacteria 1378
24 Ga0068871_100257666 3300006358 Bacteria 1521
25 Ga0105243_10025046 3300009148 Bacteria 4557
26 Ga0105243_10028928 3300009148 Bacteria 4258
27 Ga0105249_10282540 3300009553 Bacteria 1658
28 Ga0105246_10011178 3300011119 Bacteria 5564
29 Ga0157369_10000337 3300013105 Bacteria 62293
30 Ga0157369_10063995 3300013105 Bacteria 3962
31 Ga0157369_10073757 3300013105 Bacteria 3661
32 Ga0171462_1002 3300013250 Bacteria 1052134
33 Ga0157375_10284962 3300013308 Bacteria 1815
34 Ga0163163_10170601 3300014325 Bacteria 2222
35 Ga0157379_10226015 3300014968 Bacteria 1696
36 Ga0197907_11344470 3300020069 Bacteria 1911
37 Ga0206354_11376558 3300020081 Bacteria 2515
38 Ga0209566_100013 3300025225 Bacteria 474033
39 Ga0209674_100001 3300025226 Bacteria 4013750
40 Ga0209672_100011 3300025228 Bacteria 856297
41 Ga0209147_100238 3300025229 Bacteria 54120
42 Ga0209563_100001 3300025230 Bacteria 4013775
43 Ga0209563_100348 3300025230 Bacteria 17586
44 Ga0209258_103418 3300025242 Bacteria 3431
45 Ga0209677_100001 3300025253 Bacteria 4013787
46 Ga0209677_100659 3300025253 Bacteria 18101
47 Ga0209148_1000023 3300025254 Bacteria 680511
48 Ga0209129_1000142 3300025258 Bacteria 116806
49 Ga0209455_1000023 3300025272 Bacteria 680449
50 Ga0209455_1002999 3300025272 Bacteria 6200
51 Ga0209025_1000948 3300025294 Bacteria 44022
52 Ga0207705_10039343 3300025909 Bacteria 3389
53 Ga0207709_10047243 3300025935 Bacteria 2615
54 Ga0207709_10140923 3300025935 Bacteria 1657
55 Ga0207712_10309291 3300025961 Bacteria 1300
56 Ga0207698_10078213 3300026142 Bacteria 2655
57 Ga0316179_1077158 3300030734 Bacteria 1736
58 Ga0316180_1091843 3300030736 Bacteria 1375
59 Ga0307408_100005860 3300031548 Bacteria 8176
60 Ga0265314_10023054 3300031711 Bacteria 4756
61 Ga0307405_10021599 3300031731 Bacteria 3621
62 Ga0307413_10093711 3300031824 Bacteria 1964
63 Ga0307413_10252661 3300031824 Bacteria 1309
64 Ga0307410_10076043 3300031852 Bacteria 2343
65 Ga0307406_10074796 3300031901 Bacteria 2232
66 Ga0307412_10009861 3300031911 Bacteria 5489
67 Ga0307412_10237687 3300031911 Bacteria 1407
68 Ga0307409_100044355 3300031995 Bacteria 3348
69 Ga0395899_0010117 3300037312 Bacteria 7233
70 Ga0395899_0013659 3300037312 Bacteria 6208
71 Ga0395899_0050162 3300037312 Bacteria 3100
72 Ga0395900_0001084 3300037418 Bacteria 34636
73 Ga0395900_0145976 3300037418 Bacteria 2419
74 Ga0395898_0000270 3300037466 Bacteria 127152
75 Ga0395905_0255436 3300037471 Bacteria 1637
76 Ga0395901_0072204 3300038443 Bacteria 3597
77 Ga0395901_0142913 3300038443 Bacteria 2515
78 Ga0439449_0001307 3300042007 Bacteria 9752
79 Ga0439434_0024926 3300042435 Bacteria 1805
80 Ga0466972_0029165 3300044658 Bacteria 2717
81 Ga0466972_0049236 3300044658 Bacteria 2035
82 Ga0466972_0110310 3300044658 Bacteria 1300
83 Ga0466965_0010280 3300044683 Bacteria 4360
84 Ga0466965_0046226 3300044683 Bacteria 2154
85 Ga0466970_0010872 3300044765 Bacteria 4629
86 Ga0466970_0036823 3300044765 Bacteria 2592
87 Ga0466970_0062378 3300044765 Bacteria 1998
88 Ga0466957_0099358 3300044842 Bacteria 1832
89 Ga0466957_0139156 3300044842 Bacteria 1563
90 Ga0466960_0023581 3300044901 Bacteria 2764
91 Ga0466959_0066637 3300045049 Bacteria 2612
92 Ga0466959_0083720 3300045049 Bacteria 2296
93 Ga0466958_0069842 3300045836 Bacteria 2148
94 Ga0495590_0000346 3300046457 Bacteria 23966
95 Ga0495672_0014795 3300047320 Bacteria 5321
96 Ga0495672_0048936 3300047320 Bacteria 2505
97 Ga0496102_0110034 3300048905 Bacteria 2568
98 Ga0496103_0190183 3300048906 Bacteria 1320
99 Ga0496104_0027901 3300048907 Bacteria 5227
100 Ga0496104_0067836 3300048907 Bacteria 3389
101 Ga0496105_0112926 3300048908 Bacteria 2242
102 Ga0496105_0329880 3300048908 Bacteria 1221
103 Ga0496109_0034238 3300048912 Bacteria 4573
104 Ga0496110_0397551 3300048913 Bacteria 1256
105 Ga0496111_0200112 3300048914 Bacteria 1485
106 Ga0496113_0187119 3300048916 Bacteria 1643
107 Ga0496115_0023296 3300048918 Bacteria 4804
108 Ga0496115_0120841 3300048918 Bacteria 2155
109 Ga0496115_0224155 3300048918 Bacteria 1551
110 Ga0496115_0279444 3300048918 Bacteria 1371
111 Ga0496116_0007328 3300048919 Bacteria 9812
112 Ga0496117_0028586 3300048920 Bacteria 4315
113 Ga0496117_0065248 3300048920 Bacteria 2476
114 Ga0496118_0004617 3300048921 Bacteria 16177
115 Ga0496118_0115041 3300048921 Bacteria 1772
116 Ga0496119_0001370 3300048922 Bacteria 29726
117 Ga0496119_0102045 3300048922 Bacteria 1609
118 Ga0496122_0001735 3300048925 Bacteria 33820
119 Ga0496123_0005136 3300048926 Bacteria 13348
120 Ga0496126_0001056 3300048929 Bacteria 46568
121 Ga0496126_0054368 3300048929 Bacteria 3627
122 Ga0501034_0023005 3300049571 Bacteria 6351
123 Ga0501034_0027138 3300049571 Bacteria 5826
124 Ga0501034_0081310 3300049571 Bacteria 3242
125 Ga0501034_0109874 3300049571 Bacteria 2748
126 Ga0501038_0006609 3300049574 Bacteria 10727
127 Ga0501038_0011139 3300049574 Bacteria 8212
128 Ga0501046_0020909 3300049580 Bacteria 5404
129 Ga0501047_0277441 3300049581 Bacteria 1521
130 Ga0501070_0000098 3300049586 Bacteria 75579
131 Ga0501070_0007551 3300049586 Bacteria 9241
132 Ga0501072_0041041 3300049588 Bacteria 3634
133 Ga0501035_0053702 3300049822 Bacteria 3602
134 Ga0501044_0006909 3300049823 Bacteria 12495
135 Ga0500562_000248 3300053108 Bacteria 13869
136 Ga0500559_0000872 3300053136 Bacteria 19356
137 Ga0500559_0013041 3300053136 Bacteria 3524
138 Ga0500568_0000354 3300053139 Bacteria 35656
139 Ga0500573_0074848 3300053140 Bacteria 1928
140 Ga0500573_0091864 3300053140 Bacteria 1714
141 Ga0500573_0116437 3300053140 Bacteria 1491
142 Ga0500577_0008988 3300053142 Bacteria 2880
143 Ga0501084_0078340 3300054114 Bacteria 2770
144 Ga0466962_0023606 3300061719 Bacteria 2955
145 2588107230 2585428157 Bacteria 3018951
146 2643754259 2643221546 Bacteria 2910897
147 2643766935 2643221549 Bacteria 4042819
148 2643877287 2643221572 Bacteria 3614809
149 2643997041 2643221597 Bacteria 3347721
150 2644113146 2643221619 Bacteria 4158469
151 2644181656 2643221632 Bacteria 3406696
152 2644198092 2643221635 Bacteria 2632343
153 2644280066 2643221649 Bacteria 3867359
154 2644384342 2643221669 Bacteria 3611286
155 2644489476 2643221687 Bacteria 6500351
156 2723640216 2721755702 Bacteria 4373124
157 2729908722 2728369276 Bacteria 5610032
158 2738694934 2738541272 Bacteria 6848551
159 2739325722 2738543027 Bacteria 6409078
160 2739608423 2739367654 Bacteria 6049412
161 2747954403 2747842429 Bacteria 3914386
162 2760305776 2758568522 Bacteria 5953541
163 2760625714 2758568621 Bacteria 5967089
164 2774379749 2773857758 Bacteria 3592392
165 2808629188 2808606306 Bacteria 3608896
166 2808899676 2808606372 Bacteria 4649509
167 2809030745 2808606394 Bacteria 6248540
168 2809228680 2808606447 Bacteria 3572005
169 2833712617 2833709550 Bacteria 4008291
170 2844844485 2844841374 Bacteria 3917147
171 2852633948 2852632344 Bacteria 3463163
172 2852663768 2852663356 Bacteria 4090475
173 2857721854 2857720070 Bacteria 3189373
174 2857731556 2857729791 Bacteria 4040535
175 2870622577 2870622029 Bacteria 3643329
176 2895661903 2895660088 Bacteria 3782833
177 2908679215 2908678064 Bacteria 3482747
178 2919051695 2919051321 Bacteria 4210889
179 2919056442 2919055335 Bacteria 3875751
180 2919444460 2919443155 Bacteria 4072969
181 2919526436 2919523602 Bacteria 3788128
182 2928124546 2928121344 Bacteria 3972376
183 2928155250 2928153084 Bacteria 4020257
184 2935412668 2935409751 Bacteria 4179611
185 2964328777 2964326757 Bacteria 3290868
186 8004213053 8004212874 Bacteria 2861420
187 8046354804 8046352972 Bacteria 3613806
188 Ga0501076_0070289
189 JGI24740J21852_10004782
190 JGI24740J21852_10008354
191 JGI24739J22299_10009325
192 JGI24737J22298_10015732
193 JGI24735J21928_10008373
194 JGI25152J39213_1000137
195 Ga0006562J51391_1012772
196 Ga0006562J51391_1012774
197 Ga0055539_1000060
198 Ga0055533_1000002
199 Ga0055532_1003482
200 Ga0055525_1000142
201 Ga0055525_1003097
202 Ga0055527_1000004
203 Ga0055542_1000307
204 Ga0055529_1000008
205 Ga0055540_1000060
206 Ga0055541_1001945
207 Ga0070707_100041087
208 Ga0070664_100231598
209 Ga0068856_100354326
210 Ga0070702_100181398
211 Ga0068871_100257666
212 Ga0105243_10025046
213 Ga0105243_10028928
214 Ga0105249_10282540
215 Ga0105246_10011178
216 Ga0157369_10000337
217 Ga0157369_10063995
218 Ga0157369_10073757
219 Ga0171462_1002
220 Ga0157375_10284962
221 Ga0163163_10170601
222 Ga0157379_10226015
223 Ga0197907_11344470
224 Ga0206354_11376558
225 Ga0209566_100013
226 Ga0209674_100001
227 Ga0209672_100011
228 Ga0209147_100238
229 Ga0209563_100001
230 Ga0209563_100348
231 Ga0209258_103418
232 Ga0209677_100001
233 Ga0209677_100659
234 Ga0209148_1000023
235 Ga0209129_1000142
236 Ga0209455_1000023
237 Ga0209455_1002999
238 Ga0209025_1000948
239 Ga0207705_10039343
240 Ga0207709_10047243
241 Ga0207709_10140923
242 Ga0207712_10309291
243 Ga0207698_10078213
244 Ga0316179_1077158
245 Ga0316180_1091843
246 Ga0307408_100005860
247 Ga0265314_10023054
248 Ga0307405_10021599
249 Ga0307413_10093711
250 Ga0307413_10252661
251 Ga0307410_10076043
252 Ga0307406_10074796
253 Ga0307412_10009861
254 Ga0307412_10237687
255 Ga0307409_100044355
256 Ga0395899_0010117
257 Ga0395899_0013659
258 Ga0395899_0050162
259 Ga0395900_0001084
260 Ga0395900_0145976
261 Ga0395898_0000270
262 Ga0395905_0255436
263 Ga0395901_0072204
264 Ga0395901_0142913
265 Ga0439449_0001307
266 Ga0439434_0024926
267 Ga0466972_0029165
268 Ga0466972_0049236
269 Ga0466972_0110310
270 Ga0466965_0010280
271 Ga0466965_0046226
272 Ga0466970_0010872
273 Ga0466970_0036823
274 Ga0466970_0062378
275 Ga0466957_0099358
276 Ga0466957_0139156
277 Ga0466960_0023581
278 Ga0466959_0066637
279 Ga0466959_0083720
280 Ga0466958_0069842
281 Ga0495590_0000346
282 Ga0495672_0014795
283 Ga0495672_0048936
284 Ga0496102_0110034
285 Ga0496103_0190183
286 Ga0496104_0027901
287 Ga0496104_0067836
288 Ga0496105_0112926
289 Ga0496105_0329880
290 Ga0496109_0034238
291 Ga0496110_0397551
292 Ga0496111_0200112
293 Ga0496113_0187119
294 Ga0496115_0023296
295 Ga0496115_0120841
296 Ga0496115_0224155
297 Ga0496115_0279444
298 Ga0496116_0007328
299 Ga0496117_0028586
300 Ga0496117_0065248
301 Ga0496118_0004617
302 Ga0496118_0115041
303 Ga0496119_0001370
304 Ga0496119_0102045
305 Ga0496122_0001735
306 Ga0496123_0005136
307 Ga0496126_0001056
308 Ga0496126_0054368
309 Ga0501034_0023005
310 Ga0501034_0027138
311 Ga0501034_0081310
312 Ga0501034_0109874
313 Ga0501038_0006609
314 Ga0501038_0011139
315 Ga0501046_0020909
316 Ga0501047_0277441
317 Ga0501070_0000098
318 Ga0501070_0007551
319 Ga0501072_0041041
320 Ga0501035_0053702
321 Ga0501044_0006909
322 Ga0500562_000248
323 Ga0500559_0000872
324 Ga0500559_0013041
325 Ga0500568_0000354
326 Ga0500573_0074848
327 Ga0500573_0091864
328 Ga0500573_0116437
329 Ga0500577_0008988
330 Ga0501084_0078340
331 Ga0466962_0023606
332 2588107230
333 2643754259
334 2643766935
335 2643877287
336 2643997041
337 2644113146
338 2644181656
339 2644198092
340 2644280066
341 2644384342
342 2644489476
343 2723640216
344 2729908722
345 2738694934
346 2739325722
347 2739608423
348 2747954403
349 2760305776
350 2760625714
351 2774379749
352 2808629188
353 2808899676
354 2809030745
355 2809228680
356 2833712617
357 2844844485
358 2852633948
359 2852663768
360 2857721854
361 2857731556
362 2870622577
363 2895661903
364 2908679215
365 2919051695
366 2919056442
367 2919444460
368 2919526436
369 2928124546
370 2928155250
371 2935412668
372 2964328777
373 8004213053
374 8046354804

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00285

Citrate_synt

Citrate synthase, C-terminal domain

22

375

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hwk-assembly4.cif.gz_G crystal structure of methylcitrate synthase from mycobacterium tuberculosis 0.9377 5 373
3hwk-assembly4.cif.gz_G crystal structure of methylcitrate synthase from mycobacterium tuberculosis 0.9326 5 373
1a59-assembly1.cif.gz_A-2 cold-active citrate synthase 0.929 3 373
3tqg-assembly1.cif.gz_A structure of the 2-methylcitrate synthase (prpc) from coxiella burnetii 0.9268 15 371
6abx-assembly1.cif.gz_B crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with citrate 0.9224 5 368
ID Description Score Start End Superfamily
3hwkC01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9713 16 359 1.10.580.10
3hwkC01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9673 16 359 1.10.580.10
6abxB01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9612 16 359 1.10.580.10
1ixeD01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9583 18 359 1.10.580.10
6abxB01 Mainly Alpha;Orthogonal Bundle;Citrate Synthase; domain 1;Citrate Synthase, domain 1 0.9572 16 359 1.10.580.10
ID Description Score Start End GO Terms
AF-A0A2E8P0T7-F1-model_v4 deleted 0.9785 1 309
AF-A0A2E8P0T7-F1-model_v4 deleted 0.9753 1 309
AF-A0A378UV54-F1-model_v4 Citrate synthase I GltA1 (EC 2.3.3.1) 0.9738 38 274 GO:0004108
GO:0005829
GO:0005975
GO:0006099
AF-A0A382NKC6-F1-model_v4 Citrate synthase (unknown stereospecificity) 0.9684 12 256 GO:0004108
GO:0005829
GO:0005975
GO:0006099
AF-A0A7V1RJK8-F1-model_v4 citrate synthase (unknown stereospecificity) (EC 2.3.3.16) 0.9666 37 297 GO:0000160
GO:0004108
GO:0005829
GO:0005975
GO:0006099

Map