F288541

General Info

Members Datasets Scaffolds Average Seq Length
187 129 374 431

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2929154850|2929158020
Length 437
Sequence NFSIEATIGHLHIDALNDMQKASLEASATHDNIVLLSATGSGKTLAFLLPILQSIDFASRRTQALIVAPSRELALQIENVLKLMRTGLKITCCYGGHLRETEENNLVEPPAILVGTPGRLADHIRRSNIDRETIDTIVLDEFDKSLEAGFHDEISFIIGALPNLKKRMLISATETVEIPDFVGLTEPFKINFLQEGAEDNRLAIHTVESPDRDKADTLFRLICFLGNRLTIVFCNHRDAVERTSAILSDKGITNEFYHGSMEQRDRDSALAKFRNSSVSVLVTTDLAARGLDIPHIRYIIHYHLPHTAEIFTHRNGRTARMEASGTAILILSPDEKLPGYVTEVDKEIELPEKVEIPEKPKWTTFFIAAGKKDKVNKIDIVGFLSNKGELKQEDIGLIEVKDFFSFVAVRKSKASHTLQLIKEEKIKNKKVKIEVAK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
11 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
15 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
36 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
37 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
38 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
39 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
40 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
41 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
42 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
43 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
46 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
58 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
59 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
60 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
64 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
70 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
71 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
72 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
73 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
74 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
75 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
76 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
77 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
81 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
82 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
83 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
84 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
85 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
86 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
89 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
90 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
91 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
92 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
93 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
94 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
95 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
96 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
97 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
98 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
99 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
100 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
101 2738541283 Pedobacter sp. OK701 Isolate Unclassified
102 2738541284 Pedobacter sp. YR016 Isolate Unclassified
103 2738541302 Pedobacter sp. CF074 Isolate Unclassified
104 2738543023 Pedobacter sp. OK628 Isolate Unclassified
105 2739367651 Pedobacter sp. OK291 Isolate Unclassified
106 2739367656 Pedobacter sp. CF523 Isolate Unclassified
107 2739367663 Pedobacter sp. YR510 Isolate Unclassified
108 2818991437 Pedobacter terrae 518 Isolate Unclassified
109 2818991444 Filimonas endophytica 3197 Isolate Unclassified
110 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
111 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
112 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
113 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
114 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
115 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
116 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
117 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
118 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
119 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
120 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
121 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
122 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
123 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
124 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
125 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
126 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
127 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
128 2993372514 Chryseobacterium sp. SLBN-27 Isolate Rhizosphere
129 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.89
Metatranscriptomes 0
Isolates 17.11

Biome Distribution

Category Percentage (%)
Aerial Root 1.07
Bulb 0
Endosphere 11.23
Nodule 0
Rhizoplane 1.07
Rhizosphere 72.19
Stem 0
Stem Tuber 0
Unclassified 3.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_41309 2162886007 Bacteria 15318
2 JGI24736J21556_1001293 3300001904 Bacteria 4583
3 JGI24737J22298_10001544 3300001990 Bacteria 8184
4 JGI24735J21928_10000004 3300002067 Bacteria 381713
5 JGI25162J39368_1000059 3300002737 Bacteria 138925
6 JGI25152J39213_1000292 3300002773 Bacteria 32967
7 JGI25150J39212_1000014 3300002774 Bacteria 170955
8 JGI25151J46595_10000042 3300003187 Bacteria 170955
9 JGI25153J46596_10000009 3300003215 Bacteria 340925
10 rootL2_10039986 3300003322 Bacteria 2050
11 rootH1_10058948 3300003323 Bacteria 20364
12 Ga0065714_10002337 3300005288 Bacteria 23955
13 Ga0065714_10003780 3300005288 Bacteria 10300
14 Ga0065714_10003993 3300005288 Bacteria 5656
15 Ga0065714_10082879 3300005288 Bacteria 2282
16 Ga0065704_10000212 3300005289 Bacteria 87819
17 Ga0070683_100098862 3300005329 Bacteria 2746
18 Ga0070660_100008162 3300005339 Bacteria 7318
19 Ga0070659_100000372 3300005366 Bacteria 33822
20 Ga0070659_100003605 3300005366 Bacteria 11020
21 Ga0068867_100097271 3300005459 Unclassified 2242
22 Ga0068855_100000086 3300005563 Bacteria 111462
23 Ga0068855_100035610 3300005563 Bacteria 5929
24 Ga0068855_100079980 3300005563 Bacteria 3790
25 Ga0068855_100169029 3300005563 Bacteria 2477
26 Ga0068855_100465316 3300005563 Bacteria 1378
27 Ga0068854_100141547 3300005578 Bacteria 1846
28 Ga0068852_100163872 3300005616 Bacteria 2078
29 Ga0068858_100068899 3300005842 Bacteria 3279
30 Ga0075366_10062626 3300006195 Bacteria 2211
31 Ga0097621_100003878 3300006237 Bacteria 10364
32 Ga0105240_10040722 3300009093 Bacteria 5939
33 Ga0105240_10125010 3300009093 Bacteria 3092
34 Ga0105237_10000411 3300009545 Bacteria 60960
35 Ga0105237_10000965 3300009545 Bacteria 38704
36 Ga0105237_10001855 3300009545 Bacteria 27072
37 Ga0105237_10005068 3300009545 Bacteria 14965
38 Ga0105237_10021951 3300009545 Bacteria 6555
39 Ga0105237_10068018 3300009545 Bacteria 3556
40 Ga0105238_10152769 3300009551 Bacteria 2283
41 Ga0105249_10226025 3300009553 Unclassified 1844
42 Ga0105239_10000005 3300010375 Bacteria 496066
43 Ga0105239_10000042 3300010375 Bacteria 199662
44 Ga0105239_10001666 3300010375 Bacteria 29274
45 Ga0105239_10002037 3300010375 Bacteria 26210
46 Ga0105239_10025806 3300010375 Bacteria 6471
47 Ga0157373_10000287 3300013100 Bacteria 40438
48 Ga0157373_10003169 3300013100 Bacteria 12429
49 Ga0157373_10007295 3300013100 Bacteria 8233
50 Ga0157373_10019032 3300013100 Bacteria 4998
51 Ga0157373_10030987 3300013100 Bacteria 3849
52 Ga0157371_10000274 3300013102 Bacteria 69782
53 Ga0157371_10000622 3300013102 Bacteria 42231
54 Ga0157371_10002141 3300013102 Bacteria 19240
55 Ga0157371_10003712 3300013102 Bacteria 13693
56 Ga0157370_10000285 3300013104 Bacteria 64200
57 Ga0157370_10001662 3300013104 Bacteria 27402
58 Ga0157370_10012413 3300013104 Bacteria 8833
59 Ga0157370_10024869 3300013104 Bacteria 5929
60 Ga0157370_10042051 3300013104 Bacteria 4405
61 Ga0157370_10072626 3300013104 Bacteria 3246
62 Ga0157369_10000897 3300013105 Bacteria 37997
63 Ga0157369_10001747 3300013105 Bacteria 26355
64 Ga0163162_10000172 3300013306 Bacteria 59926
65 Ga0157372_10001155 3300013307 Bacteria 28553
66 Ga0157372_10002020 3300013307 Bacteria 22055
67 Ga0157372_10081035 3300013307 Bacteria 3673
68 Ga0157372_10203864 3300013307 Bacteria 2292
69 Ga0182008_10000024 3300014497 Bacteria 199978
70 Ga0182008_10000078 3300014497 Bacteria 77087
71 Ga0182008_10001962 3300014497 Bacteria 13209
72 Ga0182006_1000297 3300015261 Bacteria 43680
73 Ga0182006_1000424 3300015261 Bacteria 33825
74 Ga0182006_1000933 3300015261 Bacteria 19497
75 Ga0182007_10000002 3300015262 Bacteria 564661
76 Ga0182007_10010618 3300015262 Bacteria 3628
77 Ga0182007_10021181 3300015262 Bacteria 2312
78 Ga0163161_10001297 3300017792 Bacteria 18633
79 Ga0163161_10003475 3300017792 Bacteria 11043
80 Ga0163161_10013474 3300017792 Bacteria 5692
81 Ga0163161_10171224 3300017792 Bacteria 1660
82 Ga0209437_100169 3300025233 Bacteria 142584
83 Ga0207425_1000023 3300025245 Bacteria 341339
84 Ga0209026_1000521 3300025250 Bacteria 27122
85 Ga0209129_1000032 3300025258 Bacteria 341150
86 Ga0209455_1006925 3300025272 Bacteria 3280
87 Ga0209025_1000047 3300025294 Bacteria 341150
88 Ga0209758_1000145 3300025297 Bacteria 170553
89 Ga0207647_10000494 3300025904 Bacteria 31578
90 Ga0207695_10048588 3300025913 Bacteria 4480
91 Ga0207671_10000615 3300025914 Bacteria 46998
92 Ga0207671_10000791 3300025914 Bacteria 40082
93 Ga0207671_10004213 3300025914 Bacteria 13860
94 Ga0207657_10018878 3300025919 Bacteria 6566
95 Ga0207690_10000508 3300025932 Bacteria 25218
96 Ga0207689_10099528 3300025942 Unclassified 2389
97 Ga0207661_10130134 3300025944 Bacteria 2154
98 Ga0207667_10000229 3300025949 Bacteria 78821
99 Ga0207667_10057010 3300025949 Bacteria 4102
100 Ga0207640_10012797 3300025981 Bacteria 4791
101 Ga0207703_10053544 3300026035 Bacteria 3280
102 Ga0207698_10241739 3300026142 Bacteria 1646
103 Ga0307515_10001287 3300028794 Bacteria 56974
104 Ga0307515_10011928 3300028794 Bacteria 16415
105 Ga0316176_1057051 3300030732 Bacteria 34395
106 Ga0316183_1093843 3300030742 Bacteria 22860
107 Ga0316181_1177925 3300030744 Bacteria 37143
108 Ga0307509_10080327 3300031507 Bacteria 3373
109 Ga0307408_100004026 3300031548 Bacteria 10024
110 Ga0307516_10236438 3300031730 Bacteria 1528
111 Ga0307405_10000015 3300031731 Bacteria 206299
112 Ga0307405_10031989 3300031731 Unclassified 3104
113 Ga0307407_10000054 3300031903 Bacteria 49850
114 Ga0307412_10000030 3300031911 Bacteria 208541
115 Ga0307412_10017688 3300031911 Unclassified 4270
116 Ga0307416_100000002 3300032002 Bacteria 509907
117 Ga0307414_10000120 3300032004 Bacteria 55188
118 Ga0307414_10001650 3300032004 Bacteria 11607
119 Ga0307414_10058938 3300032004 Unclassified 2708
120 Ga0307414_10162374 3300032004 Bacteria 1776
121 Ga0395901_0142722 3300038443 Bacteria 2517
122 Ga0495590_0004071 3300046457 Bacteria 5928
123 Ga0495651_0044173 3300046462 Bacteria 3454
124 Ga0495585_0000925 3300046492 Bacteria 24860
125 Ga0495610_0000197 3300046512 Bacteria 67429
126 Ga0495648_0061310 3300046524 Bacteria 2235
127 Ga0495652_0072158 3300046529 Bacteria 2879
128 Ga0495609_0002253 3300046538 Bacteria 12033
129 Ga0495633_0000079 3300046558 Bacteria 127941
130 Ga0495668_0000010 3300046616 Bacteria 487308
131 Ga0495625_0000932 3300046660 Bacteria 39330
132 Ga0495625_0007060 3300046660 Bacteria 9869
133 Ga0495625_0028478 3300046660 Bacteria 4189
134 Ga0495625_0034894 3300046660 Bacteria 3710
135 Ga0495661_0001572 3300046665 Bacteria 18804
136 Ga0495661_0011263 3300046665 Bacteria 6069
137 Ga0495636_0000011 3300047318 Bacteria 87862
138 Ga0495673_0024416 3300047469 Bacteria 2922
139 Ga0495686_0000283 3300047472 Bacteria 89298
140 Ga0495686_0016754 3300047472 Bacteria 4959
141 Ga0496115_0204713 3300048918 Bacteria 1630
142 Ga0496122_0001975 3300048925 Bacteria 30642
143 Ga0496123_0045884 3300048926 Bacteria 2971
144 Ga0496125_0161339 3300048928 Bacteria 1522
145 Ga0495682_0010173 3300049460 Bacteria 3654
146 Ga0501223_001445 3300049663 Bacteria 5491
147 nmdc:mga0k408_1007_c1 3300050493 Bacteria 15485
148 Ga0500635_0002852 3300053080 Bacteria 4301
149 Ga0500635_0003752 3300053080 Unclassified 3847
150 Ga0500651_0001215 3300053093 Bacteria 12809
151 Ga0500562_000111 3300053108 Bacteria 28772
152 Ga0500618_000124 3300053125 Bacteria 63455
153 Ga0500622_0000354 3300053156 Bacteria 44739
154 Ga0500624_000962 3300053157 Bacteria 5922
155 Ga0500645_003030 3300053730 Bacteria 7083
156 2929158020 2929154850 Bacteria 6753285
157 2586206328 2585427687 Bacteria 5544917
158 2599478207 2599185184 Bacteria 6430550
159 2738755263 2738541283 Bacteria 7222293
160 2738763596 2738541284 Bacteria 5199923
161 2738856117 2738541302 Bacteria 5944758
162 2739303125 2738543023 Bacteria 6767879
163 2739588312 2739367651 Bacteria 6359826
164 2739613909 2739367656 Bacteria 5152243
165 2739648595 2739367663 Bacteria 5040914
166 2819546294 2818991437 Bacteria 5805520
167 2819588883 2818991444 Bacteria 6968812
168 2842723868 2842722452 Bacteria 6263924
169 2842908451 2842903701 Bacteria 6986368
170 2842912401 2842909656 Bacteria 6185908
171 2849282821 2849281842 Bacteria 6065644
172 2852631912 2852627209 Bacteria 5896285
173 2857629253 2857627736 Bacteria 5625397
174 2904446573 2904445276 Bacteria 5310396
175 2919190208 2919186247 Bacteria 6244071
176 2919442603 2919437846 Bacteria 6199444
177 2928080742 2928078545 Bacteria 6534839
178 2928150967 2928147474 Bacteria 6512076
179 2932082875 2932082852 Bacteria 6563563
180 2939668489 2939664404 Bacteria 6364494
181 2945999376 2945997725 Bacteria 6404843
182 2954021784 2954016120 Bacteria 6446024
183 2977232486 2977232053 Bacteria 5485925
184 2984575299 2984572630 Bacteria 4186940
185 2984608753 2984606641 Bacteria 4186971
186 2993374164 2993372514 Bacteria 4214139
187 8055589780 8055588893 Bacteria 3619545
188 SwRhRL2b_contig_41309
189 JGI24736J21556_1001293
190 JGI24737J22298_10001544
191 JGI24735J21928_10000004
192 JGI25162J39368_1000059
193 JGI25152J39213_1000292
194 JGI25150J39212_1000014
195 JGI25151J46595_10000042
196 JGI25153J46596_10000009
197 rootL2_10039986
198 rootH1_10058948
199 Ga0065714_10002337
200 Ga0065714_10003780
201 Ga0065714_10003993
202 Ga0065714_10082879
203 Ga0065704_10000212
204 Ga0070683_100098862
205 Ga0070660_100008162
206 Ga0070659_100000372
207 Ga0070659_100003605
208 Ga0068867_100097271
209 Ga0068855_100000086
210 Ga0068855_100035610
211 Ga0068855_100079980
212 Ga0068855_100169029
213 Ga0068855_100465316
214 Ga0068854_100141547
215 Ga0068852_100163872
216 Ga0068858_100068899
217 Ga0075366_10062626
218 Ga0097621_100003878
219 Ga0105240_10040722
220 Ga0105240_10125010
221 Ga0105237_10000411
222 Ga0105237_10000965
223 Ga0105237_10001855
224 Ga0105237_10005068
225 Ga0105237_10021951
226 Ga0105237_10068018
227 Ga0105238_10152769
228 Ga0105249_10226025
229 Ga0105239_10000005
230 Ga0105239_10000042
231 Ga0105239_10001666
232 Ga0105239_10002037
233 Ga0105239_10025806
234 Ga0157373_10000287
235 Ga0157373_10003169
236 Ga0157373_10007295
237 Ga0157373_10019032
238 Ga0157373_10030987
239 Ga0157371_10000274
240 Ga0157371_10000622
241 Ga0157371_10002141
242 Ga0157371_10003712
243 Ga0157370_10000285
244 Ga0157370_10001662
245 Ga0157370_10012413
246 Ga0157370_10024869
247 Ga0157370_10042051
248 Ga0157370_10072626
249 Ga0157369_10000897
250 Ga0157369_10001747
251 Ga0163162_10000172
252 Ga0157372_10001155
253 Ga0157372_10002020
254 Ga0157372_10081035
255 Ga0157372_10203864
256 Ga0182008_10000024
257 Ga0182008_10000078
258 Ga0182008_10001962
259 Ga0182006_1000297
260 Ga0182006_1000424
261 Ga0182006_1000933
262 Ga0182007_10000002
263 Ga0182007_10010618
264 Ga0182007_10021181
265 Ga0163161_10001297
266 Ga0163161_10003475
267 Ga0163161_10013474
268 Ga0163161_10171224
269 Ga0209437_100169
270 Ga0207425_1000023
271 Ga0209026_1000521
272 Ga0209129_1000032
273 Ga0209455_1006925
274 Ga0209025_1000047
275 Ga0209758_1000145
276 Ga0207647_10000494
277 Ga0207695_10048588
278 Ga0207671_10000615
279 Ga0207671_10000791
280 Ga0207671_10004213
281 Ga0207657_10018878
282 Ga0207690_10000508
283 Ga0207689_10099528
284 Ga0207661_10130134
285 Ga0207667_10000229
286 Ga0207667_10057010
287 Ga0207640_10012797
288 Ga0207703_10053544
289 Ga0207698_10241739
290 Ga0307515_10001287
291 Ga0307515_10011928
292 Ga0316176_1057051
293 Ga0316183_1093843
294 Ga0316181_1177925
295 Ga0307509_10080327
296 Ga0307408_100004026
297 Ga0307516_10236438
298 Ga0307405_10000015
299 Ga0307405_10031989
300 Ga0307407_10000054
301 Ga0307412_10000030
302 Ga0307412_10017688
303 Ga0307416_100000002
304 Ga0307414_10000120
305 Ga0307414_10001650
306 Ga0307414_10058938
307 Ga0307414_10162374
308 Ga0395901_0142722
309 Ga0495590_0004071
310 Ga0495651_0044173
311 Ga0495585_0000925
312 Ga0495610_0000197
313 Ga0495648_0061310
314 Ga0495652_0072158
315 Ga0495609_0002253
316 Ga0495633_0000079
317 Ga0495668_0000010
318 Ga0495625_0000932
319 Ga0495625_0007060
320 Ga0495625_0028478
321 Ga0495625_0034894
322 Ga0495661_0001572
323 Ga0495661_0011263
324 Ga0495636_0000011
325 Ga0495673_0024416
326 Ga0495686_0000283
327 Ga0495686_0016754
328 Ga0496115_0204713
329 Ga0496122_0001975
330 Ga0496123_0045884
331 Ga0496125_0161339
332 Ga0495682_0010173
333 Ga0501223_001445
334 nmdc:mga0k408_1007_c1
335 Ga0500635_0002852
336 Ga0500635_0003752
337 Ga0500651_0001215
338 Ga0500562_000111
339 Ga0500618_000124
340 Ga0500622_0000354
341 Ga0500624_000962
342 Ga0500645_003030
343 2929158020
344 2586206328
345 2599478207
346 2738755263
347 2738763596
348 2738856117
349 2739303125
350 2739588312
351 2739613909
352 2739648595
353 2819546294
354 2819588883
355 2842723868
356 2842908451
357 2842912401
358 2849282821
359 2852631912
360 2857629253
361 2904446573
362 2919190208
363 2919442603
364 2928080742
365 2928150967
366 2932082875
367 2939668489
368 2945999376
369 2954021784
370 2977232486
371 2984575299
372 2984608753
373 2993374164
374 8055589780

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03880

DbpA

DbpA RNA binding domain

364

435

0.99

PF00271

Helicase_C

Helicase conserved C-terminal domain

213

322

0.93

PF00270

DEAD

DEAD/DEAH box helicase

17

181

0.91

PF04851

ResIII

Type III restriction enzyme, res subunit

12

177

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dtk-assembly1.cif.gz_A crystal structure of the reca1 domain of rna helicase cgh-1 in c. elegans 0.9253 5 190
3fe2-assembly2.cif.gz_B human dead-box rna helicase ddx5 (p68), conserved domain i in complex with adp 0.9204 3 190
4a4d-assembly1.cif.gz_A crystal structure of the n-terminal domain of the human dead-box rna helicase ddx5 (p68) 0.9134 3 192
2pl3-assembly1.cif.gz_A human dead-box rna helicase ddx10, dead domain in complex with adp 0.9125 4 189
1t6n-assembly1.cif.gz_B crystal structure of the n-terminal domain of human uap56 0.9123 3 190
ID Description Score Start End Superfamily
af_A0A0P0VQJ4_229_320_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9524 214 285 3.40.50.300
af_P25888_1_211_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9344 4 190 3.40.50.300
af_Q0INC5_134_401_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9344 5 190 3.40.50.300
af_P21693_384_456_3.30.70.330 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain 0.9335 363 434 3.30.70.330
af_Q4DYR1_2_244_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9331 4 190 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A661NHL0-F1-model_v4 DEAD box helicase DbpA/CsdA RNA-binding domain-containing protein 0.9663 359 435
AF-A0A3C2CXS9-F1-model_v4 ATP-dependent RNA helicase 0.9563 359 435 GO:0004386
AF-A0A6J5XWP1-F1-model_v4 Helicase C-terminal domain-containing protein 0.9369 208 316 GO:0004386
GO:0016787
AF-A0A2S2QW17-F1-model_v4 ATP-dependent RNA helicase p62 0.9117 227 330 GO:0004386
GO:0016787
AF-U6GKH7-F1-model_v4 Helicase C-terminal domain-containing protein 0.9112 208 333 GO:0004386
GO:0016787

Map