F289047

General Info

Members Datasets Scaffolds Average Seq Length
188 124 166 490

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100057078|Ga0068855_1000570782
Length 516
Sequence LDFSNRVRKNPVNPKNSPNPGYLYPMPLPKKALIIGAGIAGIATAIRLAVKGYQVEVYEANSYPGGKLSRFEQDGYRFDAGPSLFTMPQYVDELFKLAGKTPSDYFRYQKLDVVCRYFYEDGTRLTAYANAGKFSEEIQEKTGEPAAAVKHYLDNSSMVYNVTNHVFLERSLHRLKTHLRWDTVKSIFRFGKIDAFRTMHKANEVFFKDKRIVQFFDRYATYNGSNPYSAPATLNVIPHLEQHFGAYFPEGGMYNITSCLVALAESLGIKFHYNNPVAEIVLQGYKVKGIKTNDGVIEGDLVVSNMDIWFTYHKLLSSHPKLHPQKILNQERSSSALIFYWGIRDQFRELDLHNIFFSADYEAEFNHIWKEKEIYHDPTVYLNISSKYKPDDAPESCENWFVMINVPANTGQDWDALIAGARENVLNKLSRLLSKDIRKLIANESILDPRSIESRTSSYQGSLYGTSSNSRFAAFLRHANKSSKIKGLYFCGGSVHPGGGIPLCLLSAKIVSELVG

Samples

Sample ID Description Type Environment
1 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
2 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
3 2738541302 Pedobacter sp. CF074 Isolate Unclassified
4 2739367651 Pedobacter sp. OK291 Isolate Unclassified
5 2739367656 Pedobacter sp. CF523 Isolate Unclassified
6 2739367663 Pedobacter sp. YR510 Isolate Unclassified
7 2818991437 Pedobacter terrae 518 Isolate Unclassified
8 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
9 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
10 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
11 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
12 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
13 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
14 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
15 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
16 2911138879 Spirosoma sp. KUDC1026 Isolate Rhizosphere
17 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
18 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
19 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
20 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
21 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
22 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
23 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
24 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
25 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
26 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
27 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
28 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
29 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
30 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
31 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
32 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
33 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
34 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
35 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
38 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
39 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
40 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
41 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
42 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
43 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
44 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
45 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
46 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
60 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
63 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
64 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
65 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
66 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
67 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
81 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
82 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
83 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
87 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
88 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
89 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
90 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
94 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
95 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
96 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
97 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
98 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
99 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
100 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
101 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
102 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
103 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
104 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
105 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
106 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
107 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
108 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
111 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
112 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
113 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
114 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
117 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
118 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
119 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
120 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
121 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
122 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
123 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
124 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.77
Metatranscriptomes 0
Isolates 12.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.77
Nodule 0
Rhizoplane 0.53
Rhizosphere 72.87
Stem 0
Stem Tuber 0
Unclassified 13.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1002620 3300001904 Bacteria 3157
2 JGI24735J21928_10000019 3300002067 Bacteria 108890
3 JGI25162J39368_1000117 3300002737 Bacteria 87536
4 JGI25152J39213_1000740 3300002773 Bacteria 16730
5 JGI25150J39212_1000005 3300002774 Bacteria 311800
6 JGI25151J46595_10000004 3300003187 Bacteria 494006
7 JGI25153J46596_10000004 3300003215 Bacteria 494006
8 rootH2_10007437 3300003320 Bacteria 14200
9 rootH2_10108537 3300003320 Bacteria 3118
10 rootH2_10171092 3300003320 Bacteria 4281
11 rootH2_10285202 3300003320 Bacteria 2302
12 rootH1_10018031 3300003316 Bacteria 7413
13 rootH1_10018031 3300003323 Bacteria 3363
14 rootH1_10127654 3300003323 Bacteria 8238
15 Ga0055536_1000016 3300003781 Bacteria 222134
16 Ga0055530_10000945 3300003791 Bacteria 23751
17 Ga0065714_10064495 3300005288 Bacteria 48472
18 Ga0065714_10072392 3300005288 Bacteria 3376
19 Ga0065704_10128062 3300005289 Bacteria 1667
20 Ga0070683_100009915 3300005329 Bacteria 8165
21 Ga0070660_100044872 3300005339 Bacteria 3382
22 Ga0070659_100000465 3300005366 Bacteria 29940
23 Ga0070659_100011510 3300005366 Bacteria 6545
24 Ga0070667_100075843 3300005367 Unclassified 2871
25 Ga0070662_100000003 3300005457 Bacteria 239813
26 Ga0068855_100057078 3300005563 Bacteria 4577
27 Ga0068857_100018920 3300005577 Bacteria 6043
28 Ga0068856_100024749 3300005614 Bacteria 5847
29 Ga0075366_10009911 3300006195 Bacteria 5332
30 Ga0075366_10044813 3300006195 Bacteria 2622
31 Ga0105244_10004476 3300009036 Bacteria 9597
32 Ga0105240_10011079 3300009093 Bacteria 12608
33 Ga0105237_10013331 3300009545 Bacteria 8623
34 Ga0105237_10013601 3300009545 Bacteria 8526
35 Ga0105237_10025340 3300009545 Bacteria 6066
36 Ga0105239_10002462 3300010375 Bacteria 23588
37 Ga0105239_10004274 3300010375 Bacteria 17134
38 Ga0157373_10000083 3300013100 Bacteria 81952
39 Ga0157373_10010087 3300013100 Bacteria 6960
40 Ga0157373_10013992 3300013100 Bacteria 5881
41 Ga0157371_10002361 3300013102 Bacteria 18061
42 Ga0157371_10003503 3300013102 Bacteria 14190
43 Ga0157371_10006549 3300013102 Bacteria 9578
44 Ga0157371_10020542 3300013102 Bacteria 4859
45 Ga0157370_10005098 3300013104 Bacteria 14820
46 Ga0157370_10026123 3300013104 Bacteria 5769
47 Ga0157370_10037596 3300013104 Bacteria 4692
48 Ga0157369_10000450 3300013105 Bacteria 54555
49 Ga0157369_10000507 3300013105 Bacteria 51275
50 Ga0157369_10092230 3300013105 Bacteria 3232
51 Ga0157369_10126516 3300013105 Bacteria 2709
52 Ga0157378_10034330 3300013297 Bacteria 4486
53 Ga0163162_10000073 3300013306 Bacteria 91871
54 Ga0157372_10000048 3300013307 Bacteria 142757
55 Ga0157372_10000354 3300013307 Bacteria 50294
56 Ga0157372_10011523 3300013307 Bacteria 9405
57 Ga0182008_10000165 3300014497 Bacteria 51552
58 Ga0182006_1000064 3300015261 Bacteria 153418
59 Ga0182006_1000247 3300015261 Bacteria 50590
60 Ga0182007_10000016 3300015262 Bacteria 202375
61 Ga0183373_1011 3300015682 Bacteria 138873
62 Ga0163161_10000824 3300017792 Bacteria 24264
63 Ga0163161_10002182 3300017792 Bacteria 14113
64 Ga0163161_10017100 3300017792 Bacteria 5073
65 Ga0213875_10017129 3300021388 Bacteria 3506
66 Ga0209437_100030 3300025233 Bacteria 532466
67 Ga0207425_1000008 3300025245 Bacteria 618024
68 Ga0209026_1001088 3300025250 Bacteria 13043
69 Ga0209026_1001822 3300025250 Bacteria 8764
70 Ga0209129_1000040 3300025258 Bacteria 313043
71 Ga0209676_1000106 3300025292 Bacteria 222576
72 Ga0209025_1000020 3300025294 Bacteria 618024
73 Ga0209758_1000022 3300025297 Bacteria 618024
74 Ga0209050_1000174 3300025298 Bacteria 148871
75 Ga0207647_10001052 3300025904 Bacteria 21267
76 Ga0207647_10057635 3300025904 Bacteria 2381
77 Ga0207654_10013759 3300025911 Bacteria 4169
78 Ga0207695_10000197 3300025913 Bacteria 168837
79 Ga0207695_10038369 3300025913 Bacteria 5158
80 Ga0207671_10000516 3300025914 Bacteria 52391
81 Ga0207671_10002004 3300025914 Bacteria 22433
82 Ga0207671_10009062 3300025914 Bacteria 8365
83 Ga0207657_10053922 3300025919 Bacteria 3480
84 Ga0207657_10167726 3300025919 Bacteria 1780
85 Ga0207690_10000669 3300025932 Bacteria 21955
86 Ga0207690_10010109 3300025932 Bacteria 5604
87 Ga0207667_10054250 3300025949 Bacteria 4216
88 Ga0207674_10013951 3300026116 Bacteria 8888
89 Ga0307515_10000510 3300028794 Bacteria 92702
90 Ga0307515_10061637 3300028794 Bacteria 5315
91 Ga0316579_10043326 3300031691 Bacteria 2094
92 Ga0316578_10025186 3300031728 Bacteria 3343
93 Ga0307405_10000023 3300031731 Bacteria 141450
94 Ga0307407_10000057 3300031903 Bacteria 49070
95 Ga0307409_100018127 3300031995 Bacteria 4718
96 Ga0307416_100000112 3300032002 Bacteria 49491
97 Ga0307414_10001027 3300032004 Bacteria 14251
98 Ga0316585_10003769 3300032137 Bacteria 4187
99 Ga0307507_10000144 3300033179 Bacteria 123842
100 Ga0316574_0026645 3300035398 Bacteria 3478
101 Ga0316582_0153302 3300036647 Bacteria 1558
102 Ga0395899_0000050 3300037312 Bacteria 224591
103 Ga0395899_0000453 3300037312 Bacteria 46699
104 Ga0395900_0025953 3300037418 Bacteria 5999
105 Ga0436364_0236408 3300037853 Bacteria 8209
106 Ga0400483_047145 3300039062 Bacteria 4295
107 Ga0451577_0000217 3300042876 Bacteria 119582
108 Ga0451577_0007046 3300042876 Bacteria 11086
109 Ga0451577_0026372 3300042876 Bacteria 5264
110 Ga0451577_0029063 3300042876 Bacteria 4998
111 Ga0451577_0105564 3300042876 Bacteria 2518
112 Ga0453683_0001812 3300044673 Bacteria 17636
113 Ga0453683_0010080 3300044673 Bacteria 6278
114 Ga0453683_0021851 3300044673 Bacteria 4081
115 Ga0453683_0194856 3300044673 Bacteria 1286
116 Ga0466961_0039399 3300044693 Bacteria 3029
117 Ga0453684_0000570 3300044712 Bacteria 137760
118 Ga0453684_0009200 3300044712 Bacteria 17361
119 Ga0453684_0035305 3300044712 Bacteria 6914
120 Ga0453684_0151464 3300044712 Bacteria 2755
121 Ga0453684_0190917 3300044712 Bacteria 2396
122 Ga0451576_0000095 3300045051 Bacteria 223485
123 Ga0451576_0006539 3300045051 Bacteria 14265
124 Ga0451576_0009271 3300045051 Bacteria 11433
125 Ga0451576_0013149 3300045051 Bacteria 9264
126 Ga0451576_0038262 3300045051 Bacteria 5077
127 Ga0495650_0000023 3300046471 Bacteria 527763
128 Ga0495585_0000323 3300046492 Bacteria 47094
129 Ga0495585_0001046 3300046492 Bacteria 22931
130 Ga0495606_0005378 3300046507 Bacteria 12283
131 Ga0495606_0006753 3300046507 Bacteria 10501
132 Ga0495606_0009791 3300046507 Bacteria 8054
133 Ga0495606_0009995 3300046507 Bacteria 7936
134 Ga0495610_0000098 3300046512 Bacteria 101620
135 Ga0495610_0003782 3300046512 Bacteria 11545
136 Ga0495616_0000842 3300046513 Bacteria 22389
137 Ga0495616_0037427 3300046513 Bacteria 2496
138 Ga0495648_0035760 3300046524 Bacteria 3215
139 Ga0495609_0002073 3300046538 Bacteria 12619
140 Ga0495633_0000004 3300046558 Bacteria 370781
141 Ga0495633_0001996 3300046558 Bacteria 14770
142 Ga0495633_0021771 3300046558 Bacteria 3201
143 Ga0495668_0000011 3300046616 Bacteria 472186
144 Ga0495625_0000018 3300046660 Bacteria 299567
145 Ga0495625_0000462 3300046660 Bacteria 60985
146 Ga0495625_0005670 3300046660 Bacteria 11312
147 Ga0495625_0039326 3300046660 Bacteria 3455
148 Ga0495661_0013784 3300046665 Bacteria 5424
149 Ga0495649_0000015 3300046694 Bacteria 246431
150 Ga0495660_0005448 3300046810 Bacteria 7619
151 Ga0495687_009547 3300047443 Bacteria 5411
152 Ga0495686_0000303 3300047472 Bacteria 84544
153 Ga0495686_0069671 3300047472 Bacteria 2168
154 Ga0501033_0104367 3300049570 Bacteria 2066
155 Ga0501223_000859 3300049663 Bacteria 7210
156 Ga0501223_002060 3300049663 Bacteria 4517
157 Ga0501044_0025336 3300049823 Bacteria 6286
158 Ga0501044_0099891 3300049823 Unclassified 2920
159 nmdc:mga0k408_1308_c1 3300050493 Bacteria 13446
160 nmdc:mga0k408_49781_c1 3300050493 Bacteria 2425
161 Ga0500635_0000427 3300053080 Bacteria 12277
162 Ga0500608_043953 3300053122 Bacteria 2144
163 Ga0500614_006495 3300053123 Bacteria 2459
164 Ga0500618_000011 3300053125 Bacteria 198091
165 Ga0500561_0016814 3300053137 Bacteria 1648
166 Ga0500624_001023 3300053157 Bacteria 5577

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049570 Ga0501033_0104367 Ga0501033_0104367_827_2053 383
2 3300044673 Ga0453683_0194856 Ga0453683_0194856_16_1239 390
3 3300003320 rootH2_10171092 rootH2_101710922 444
4 3300044673 Ga0453683_0021851 Ga0453683_0021851_66_1424 447
5 3300046538 Ga0495609_0002073 Ga0495609_0002073_4372_5856 468
6 3300042876 Ga0451577_0007046 Ga0451577_0007046_2366_3826 469
7 3300042876 Ga0451577_0029063 Ga0451577_0029063_1113_2576 469
8 3300044712 Ga0453684_0000570 Ga0453684_0000570_117718_119178 469
9 3300045051 Ga0451576_0000095 Ga0451576_0000095_104310_105770 469
10 3300045051 Ga0451576_0013149 Ga0451576_0013149_3971_5434 469
11 3300017792 Ga0163161_10017100 Ga0163161_100171005 470
12 3300005289 Ga0065704_10128062 Ga0065704_101280621 474
13 3300049823 Ga0501044_0025336 Ga0501044_0025336_1199_2701 474
14 3300046507 Ga0495606_0005378 Ga0495606_0005378_9710_11182 475
15 3300053125 Ga0500618_000011 Ga0500618_000011_1929_3416 475
16 3300005288 Ga0065714_10072392 Ga0065714_100723922 479
17 3300013104 Ga0157370_10005098 Ga0157370_100050984 481
18 3300015261 Ga0182006_1000247 Ga0182006_100024719 481
19 3300042876 Ga0451577_0105564 Ga0451577_0105564_405_1868 481
20 3300044673 Ga0453683_0010080 Ga0453683_0010080_1401_2870 481
21 3300044712 Ga0453684_0151464 Ga0453684_0151464_532_1995 481
22 3300045051 Ga0451576_0009271 Ga0451576_0009271_4881_6350 481
23 iso_pu_bacteria 2739367656 2739617431 482
24 iso_pu_bacteria 2839989709 2839990627 482
25 iso_pu_bacteria 2857627736 2857630365 482
26 iso_pu_bacteria 2911138879 2911142840 482
27 3300031691 Ga0316579_10043326 Ga0316579_100433262 483
28 3300031728 Ga0316578_10025186 Ga0316578_100251861 483
29 3300032137 Ga0316585_10003769 Ga0316585_100037692 483
30 3300035398 Ga0316574_0026645 Ga0316574_0026645_648_2126 483
31 3300036647 Ga0316582_0153302 Ga0316582_0153302_34_1512 483
32 iso_pu_bacteria 2945997725 2946002771 483
33 3300025250 Ga0209026_1001088 Ga0209026_10010883 484
34 3300044712 Ga0453684_0035305 Ga0453684_0035305_131_1594 484
35 3300044712 Ga0453684_0190917 Ga0453684_0190917_353_1849 484
36 3300045051 Ga0451576_0006539 Ga0451576_0006539_5790_7250 484
37 3300045051 Ga0451576_0038262 Ga0451576_0038262_2696_4159 484
38 iso_pu_bacteria 2585427687 2586207922 484
39 iso_pu_bacteria 2738541302 2738856532 484
40 iso_pu_bacteria 2739367651 2739587454 484
41 iso_pu_bacteria 2739367663 2739647861 484
42 iso_pu_bacteria 2818991437 2819550295 484
43 iso_pu_bacteria 2842722452 2842726902 484
44 iso_pu_bacteria 2842909656 2842911750 484
45 iso_pu_bacteria 2849281842 2849284995 484
46 iso_pu_bacteria 2904445276 2904448811 484
47 3300021388 Ga0213875_10017129 Ga0213875_100171292 485
48 3300037853 Ga0436364_0236408 Ga0436364_0236408_6087_7568 485
49 3300039062 Ga0400483_047145 Ga0400483_047145_542_2011 485
50 3300049663 Ga0501223_002060 Ga0501223_002060_1778_3238 485
51 iso_pu_bacteria 2954016120 2954019639 485
52 3300002773 JGI25152J39213_1000740 JGI25152J39213_10007401 486
53 3300002774 JGI25150J39212_1000005 JGI25150J39212_1000005254 486
54 3300003187 JGI25151J46595_10000004 JGI25151J46595_10000004422 486
55 3300003215 JGI25153J46596_10000004 JGI25153J46596_10000004422 486
56 3300005457 Ga0070662_100000003 Ga0070662_10000000330 486
57 3300013105 Ga0157369_10126516 Ga0157369_101265162 486
58 3300025245 Ga0207425_1000008 Ga0207425_100000818 486
59 3300025258 Ga0209129_1000040 Ga0209129_1000040248 486
60 3300025294 Ga0209025_1000020 Ga0209025_100002018 486
61 3300025297 Ga0209758_1000022 Ga0209758_100002218 486
62 3300042876 Ga0451577_0026372 Ga0451577_0026372_3617_5101 486
63 3300044673 Ga0453683_0001812 Ga0453683_0001812_8549_10027 486
64 3300044712 Ga0453684_0009200 Ga0453684_0009200_14112_15596 486
65 iso_pu_bacteria 2852623160 2852625473 486
66 iso_pu_bacteria 2884933994 2884934478 486
67 iso_pu_bacteria 2919437846 2919440104 486
68 iso_pu_bacteria 2977232053 2977235384 486
69 3300006195 Ga0075366_10009911 Ga0075366_100099115 487
70 3300028794 Ga0307515_10000510 Ga0307515_100005103 487
71 3300033179 Ga0307507_10000144 Ga0307507_1000014413 487
72 3300046492 Ga0495585_0000323 Ga0495585_0000323_35199_36683 487
73 3300046524 Ga0495648_0035760 Ga0495648_0035760_417_1901 487
74 3300046558 Ga0495633_0000004 Ga0495633_0000004_287272_288756 487
75 3300046558 Ga0495633_0021771 Ga0495633_0021771_134_1606 487
76 3300046616 Ga0495668_0000011 Ga0495668_0000011_322964_324448 487
77 3300046660 Ga0495625_0000462 Ga0495625_0000462_52227_53711 487
78 3300050493 nmdc:mga0k408_1308_c1 nmdc:mga0k408_1308_c1_51_1535 487
79 3300053123 Ga0500614_006495 Ga0500614_006495_845_2329 487
80 3300053137 Ga0500561_0016814 Ga0500561_0016814_56_1540 487
81 iso_pu_bacteria 2928078545 2928082743 487
82 iso_pu_bacteria 2928147474 2928149776 487
83 3300003781 Ga0055536_1000016 Ga0055536_1000016169 488
84 3300003791 Ga0055530_10000945 Ga0055530_1000094510 488
85 3300005288 Ga0065714_10064495 Ga0065714_1006449527 488
86 3300005614 Ga0068856_100024749 Ga0068856_1000247493 488
87 3300009036 Ga0105244_10004476 Ga0105244_100044769 488
88 3300009093 Ga0105240_10011079 Ga0105240_100110795 488
89 3300009545 Ga0105237_10025340 Ga0105237_100253403 488
90 3300010375 Ga0105239_10004274 Ga0105239_100042747 488
91 3300013100 Ga0157373_10013992 Ga0157373_100139922 488
92 3300013102 Ga0157371_10002361 Ga0157371_1000236113 488
93 3300013104 Ga0157370_10026123 Ga0157370_100261234 488
94 3300013104 Ga0157370_10037596 Ga0157370_100375963 488
95 3300013105 Ga0157369_10000450 Ga0157369_1000045044 488
96 3300013297 Ga0157378_10034330 Ga0157378_100343304 488
97 3300013306 Ga0163162_10000073 Ga0163162_1000007390 488
98 3300014497 Ga0182008_10000165 Ga0182008_1000016541 488
99 3300015261 Ga0182006_1000064 Ga0182006_100006429 488
100 3300015262 Ga0182007_10000016 Ga0182007_10000016145 488
101 3300015682 Ga0183373_1011 Ga0183373_1011111 488
102 3300017792 Ga0163161_10000824 Ga0163161_100008248 488
103 3300017792 Ga0163161_10002182 Ga0163161_1000218210 488
104 3300025292 Ga0209676_1000106 Ga0209676_100010637 488
105 3300025298 Ga0209050_1000174 Ga0209050_1000174120 488
106 3300025913 Ga0207695_10000197 Ga0207695_1000019766 488
107 3300025914 Ga0207671_10000516 Ga0207671_1000051639 488
108 3300028794 Ga0307515_10061637 Ga0307515_100616374 488
109 3300031731 Ga0307405_10000023 Ga0307405_1000002343 488
110 3300031903 Ga0307407_10000057 Ga0307407_1000005743 488
111 3300031995 Ga0307409_100018127 Ga0307409_1000181275 488
112 3300032002 Ga0307416_100000112 Ga0307416_10000011211 488
113 3300032004 Ga0307414_10001027 Ga0307414_100010273 488
114 3300037418 Ga0395900_0025953 Ga0395900_0025953_1746_3239 488
115 3300042876 Ga0451577_0000217 Ga0451577_0000217_51609_53084 488
116 3300046512 Ga0495610_0000098 Ga0495610_0000098_77409_78896 488
117 3300046660 Ga0495625_0005670 Ga0495625_0005670_1617_3104 488
118 3300049823 Ga0501044_0099891 Ga0501044_0099891_1008_2510 488
119 3300053122 Ga0500608_043953 Ga0500608_043953_368_1855 488
120 3300025949 Ga0207667_10054250 Ga0207667_100542502 489
121 3300053080 Ga0500635_0000427 Ga0500635_0000427_4681_6150 489
122 3300002067 JGI24735J21928_10000019 JGI24735J21928_1000001934 490
123 3300002737 JGI25162J39368_1000117 JGI25162J39368_100011722 490
124 3300003320 rootH2_10007437 rootH2_100074374 490
125 3300003320 rootH2_10108537 rootH2_101085373 490
126 3300003323 rootH1_10018031 rootH1_100180311 490
127 3300003323 rootH1_10127654 rootH1_101276547 490
128 3300005329 Ga0070683_100009915 Ga0070683_1000099155 490
129 3300005339 Ga0070660_100044872 Ga0070660_1000448721 490
130 3300005366 Ga0070659_100000465 Ga0070659_1000004657 490
131 3300009545 Ga0105237_10013331 Ga0105237_100133317 490
132 3300009545 Ga0105237_10013601 Ga0105237_100136017 490
133 3300010375 Ga0105239_10002462 Ga0105239_100024626 490
134 3300013100 Ga0157373_10000083 Ga0157373_1000008363 490
135 3300013100 Ga0157373_10010087 Ga0157373_100100874 490
136 3300013102 Ga0157371_10003503 Ga0157371_1000350314 490
137 3300013102 Ga0157371_10006549 Ga0157371_100065497 490
138 3300013102 Ga0157371_10020542 Ga0157371_100205422 490
139 3300013105 Ga0157369_10000507 Ga0157369_1000050726 490
140 3300013105 Ga0157369_10092230 Ga0157369_100922302 490
141 3300013307 Ga0157372_10000048 Ga0157372_1000004838 490
142 3300013307 Ga0157372_10000354 Ga0157372_1000035437 490
143 3300013307 Ga0157372_10011523 Ga0157372_100115237 490
144 3300025233 Ga0209437_100030 Ga0209437_100030434 490
145 3300025250 Ga0209026_1001822 Ga0209026_10018227 490
146 3300025904 Ga0207647_10057635 Ga0207647_100576351 490
147 3300025911 Ga0207654_10013759 Ga0207654_100137592 490
148 3300025913 Ga0207695_10038369 Ga0207695_100383695 490
149 3300025914 Ga0207671_10002004 Ga0207671_1000200416 490
150 3300025914 Ga0207671_10009062 Ga0207671_100090621 490
151 3300025919 Ga0207657_10053922 Ga0207657_100539222 490
152 3300025932 Ga0207690_10000669 Ga0207690_100006698 490
153 3300037312 Ga0395899_0000050 Ga0395899_0000050_62879_64357 490
154 3300037312 Ga0395899_0000453 Ga0395899_0000453_34410_35882 490
155 3300044693 Ga0466961_0039399 Ga0466961_0039399_470_1942 490
156 3300046471 Ga0495650_0000023 Ga0495650_0000023_379595_381070 490
157 3300046492 Ga0495585_0001046 Ga0495585_0001046_136_1611 490
158 3300046507 Ga0495606_0006753 Ga0495606_0006753_4145_5620 490
159 3300046507 Ga0495606_0009791 Ga0495606_0009791_3848_5320 490
160 3300046507 Ga0495606_0009995 Ga0495606_0009995_2462_3937 490
161 3300046512 Ga0495610_0003782 Ga0495610_0003782_4162_5637 490
162 3300046513 Ga0495616_0000842 Ga0495616_0000842_7688_9163 490
163 3300046513 Ga0495616_0037427 Ga0495616_0037427_436_1932 490
164 3300046558 Ga0495633_0001996 Ga0495633_0001996_12325_13800 490
165 3300046660 Ga0495625_0000018 Ga0495625_0000018_162051_163526 490
166 3300046660 Ga0495625_0039326 Ga0495625_0039326_134_1612 490
167 3300046665 Ga0495661_0013784 Ga0495661_0013784_1324_2799 490
168 3300046694 Ga0495649_0000015 Ga0495649_0000015_90553_92028 490
169 3300046810 Ga0495660_0005448 Ga0495660_0005448_1100_2575 490
170 3300047443 Ga0495687_009547 Ga0495687_009547_373_1848 490
171 3300047472 Ga0495686_0000303 Ga0495686_0000303_39010_40482 490
172 3300047472 Ga0495686_0069671 Ga0495686_0069671_659_2134 490
173 3300053157 Ga0500624_001023 Ga0500624_001023_415_1896 490
174 3300005367 Ga0070667_100075843 Ga0070667_1000758432 491
175 3300006195 Ga0075366_10044813 Ga0075366_100448132 491
176 3300049663 Ga0501223_000859 Ga0501223_000859_4356_5840 491
177 3300050493 nmdc:mga0k408_49781_c1 nmdc:mga0k408_49781_c1_830_2311 491
178 iso_pu_bacteria 2599185184 2599481535 498
179 iso_pu_bacteria 2932082852 2932086569 498
180 3300003320 rootH2_10285202 rootH2_102852021 500
181 3300005563 Ga0068855_100057078 Ga0068855_1000570782 500
182 3300001904 JGI24736J21556_1002620 JGI24736J21556_10026202 502
183 3300005366 Ga0070659_100011510 Ga0070659_1000115105 502
184 3300005577 Ga0068857_100018920 Ga0068857_1000189204 502
185 3300025904 Ga0207647_10001052 Ga0207647_1000105210 502
186 3300025919 Ga0207657_10167726 Ga0207657_101677261 502
187 3300025932 Ga0207690_10010109 Ga0207690_100101091 502
188 3300026116 Ga0207674_10013951 Ga0207674_100139512 502

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13450

NAD_binding_8

NAD(P)-binding Rossmann-like domain

34

101

0.93

PF01266

DAO

FAD dependent oxidoreductase

31

155

0.86

PF01593

Amino_oxidase

Flavin containing amine oxidoreductase

39

516

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
8oh5-assembly1.cif.gz_C cryo-em structure of the electron bifurcating transhydrogenase stnabc complex from sporomusa ovata (state 2) 0.9901 16 52
8ajj-assembly1.cif.gz_D crystal structure of the disulfide reductase mera from staphylococcus aureus 0.9772 16 50
3ado-assembly1.cif.gz_A crystal structure of the rabbit l-gulonate 3-dehydrogenase 0.9716 17 48
4rep-assembly1.cif.gz_A crystal structure of gamma-carotenoid desaturase 0.9627 16 501
3lk7-assembly1.cif.gz_A the crystal structure of udp-n-acetylmuramoylalanine-d-glutamate (murd) ligase from streptococcus agalactiae to 1.5a 0.9528 15 47
ID Description Score Start End Superfamily
1d7yA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9982 15 50 3.50.50.60
af_A0A0P0V2P7_13_181_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9921 18 53 3.50.50.60
4ywoA02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9899 16 50 3.50.50.60
af_P76440_125_245_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9895 17 52 3.50.50.60
af_Q4DRR6_1_276_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.988 16 52 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A179DGS7-F1-model_v4 Phytoene dehydrogenase 0.9891 16 501 GO:0016117
GO:0016491
AF-A0A258KWG9-F1-model_v4 Phytoene dehydrogenase 0.9881 16 502 GO:0016117
GO:0016491
AF-A0A4Q3AXB5-F1-model_v4 deleted 0.988 184 501
AF-A0A3B9AJQ9-F1-model_v4 Phytoene desaturase 0.9877 268 500
AF-A0A4Q3ESA0-F1-model_v4 FAD-dependent oxidoreductase 0.985 15 337 GO:0016491

Feature Viewer

pLDDT pTM Quality
90.59 0.9 High
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Predicted Structure (AlphaFold2)

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