F289166

General Info

Members Datasets Scaffolds Average Seq Length
188 142 376 352

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100010439|Ga0075431_1000104394
Length 376
Sequence MESLSSRDAHRIAHASERMLRAMAPPWLLYGANGYTGELIARRAVAAGERPVLGGRSAASVGRLAGELGLEQRVFALDDPAAVDRGLEGMKAVLHCAGPFSRTAGPMAEGCLRARAHYLDITGEIEVFEGMAARGAAALRAGVTLLPGVGFDVVPSDGLAAHLHGRLPSATHLALGFQGSGRLSRGTATTMVENLHRGGAVRREGRIVRVPAAWRTRVIDFGAGPVAAITIPWGDVATAYHTTGIPNIEVYTVVPRTTRLLFKAARPLAPLLATGPVQSLLKRRIQSGPPGPSAAHRARARSLLWGEARDTSQVVVSRLDTLEGYELTSRTALLALQCVVAGGVGAGFQTPSRAFGADFVLAVESTVRRDDPPRPV

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
59 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
86 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
89 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
90 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
91 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
92 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
93 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
94 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
95 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
96 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
97 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
98 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
99 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
100 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
101 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
102 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
103 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
104 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
105 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
106 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
107 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
108 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
109 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
110 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
111 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
112 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
113 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
114 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
115 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
116 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
117 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
118 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
119 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
120 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
121 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
122 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
123 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
124 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
125 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
126 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
127 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
132 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
135 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
136 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
137 2508501009 Bradyrhizobium sp. WSM471 Isolate Nodule
138 2643221695 Lysobacter sp. Root494 Isolate Unclassified
139 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
140 2881714928 Pseudidiomarina mangrovi ZQ330 Isolate Rhizosphere
141 2913844669 Nostocales cyanobacterium LEGE 12452 Isolate Unclassified
142 8054357960 Idiomarina rhizosphaerae M1R2S28 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.81
Metatranscriptomes 0
Isolates 3.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0.53
Rhizoplane 1.6
Rhizosphere 95.74
Stem 0
Stem Tuber 0
Unclassified 9.04

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100010439 3300006847 Bacteria 9337
2 JGI25404J52841_10001350 3300003659 Bacteria 4280
3 Ga0070676_10003527 3300005328 Bacteria 8178
4 Ga0068868_100024346 3300005338 Bacteria 4594
5 Ga0070689_100018060 3300005340 Bacteria 5189
6 Ga0070689_100054105 3300005340 Bacteria 3107
7 Ga0070687_100001445 3300005343 Bacteria 8357
8 Ga0070687_100133340 3300005343 Bacteria 1437
9 Ga0070668_100016565 3300005347 Bacteria 5509
10 Ga0070668_100300763 3300005347 Archaea 1345
11 Ga0070669_100021076 3300005353 Bacteria 4657
12 Ga0070674_100000909 3300005356 Bacteria 15450
13 Ga0070674_100006770 3300005356 Bacteria 6711
14 Ga0070673_100035705 3300005364 Bacteria 3771
15 Ga0070701_10002691 3300005438 Bacteria 6891
16 Ga0070700_100006978 3300005441 Bacteria 6065
17 Ga0070700_100025534 3300005441 Bacteria 3479
18 Ga0070708_100077069 3300005445 Bacteria 3012
19 Ga0070663_100015954 3300005455 Unclassified 4864
20 Ga0070678_100014610 3300005456 Bacteria 4962
21 Ga0070662_100000427 3300005457 Bacteria 24940
22 Ga0070681_10230292 3300005458 Unclassified 1767
23 Ga0068867_100041519 3300005459 Bacteria 3361
24 Ga0070706_100022554 3300005467 Bacteria 5796
25 Ga0070699_100000085 3300005518 Bacteria 88765
26 Ga0070699_100110641 3300005518 Bacteria 2411
27 Ga0070684_100269975 3300005535 Bacteria 1557
28 Ga0068853_100142281 3300005539 Unclassified 2154
29 Ga0070672_100009789 3300005543 Bacteria 6622
30 Ga0070672_100031091 3300005543 Bacteria 4016
31 Ga0070672_100051397 3300005543 Bacteria 3214
32 Ga0070686_100000038 3300005544 Bacteria 105132
33 Ga0070686_100037946 3300005544 Bacteria 2992
34 Ga0070665_100232156 3300005548 Archaea 1845
35 Ga0070665_100340618 3300005548 Bacteria 1504
36 Ga0070702_100038278 3300005615 Archaea 2670
37 Ga0068859_100055344 3300005617 Bacteria 3992
38 Ga0068864_100122064 3300005618 Archaea 2331
39 Ga0068864_100156404 3300005618 Bacteria 2069
40 Ga0068866_10051448 3300005718 Unclassified 2097
41 Ga0068861_100017664 3300005719 Bacteria 5069
42 Ga0068870_10066358 3300005840 Unclassified 1954
43 Ga0068870_10102644 3300005840 Archaea 1619
44 Ga0068858_100033401 3300005842 Bacteria 4775
45 Ga0068860_100024586 3300005843 Bacteria 5818
46 Ga0068860_100045427 3300005843 Unclassified 4188
47 Ga0068862_100297772 3300005844 Bacteria 1483
48 Ga0081539_10010038 3300005985 Bacteria 7789
49 Ga0081539_10021903 3300005985 Bacteria 4248
50 Ga0097621_100251620 3300006237 Bacteria 1547
51 Ga0075428_100158730 3300006844 Bacteria 2455
52 Ga0075431_100056581 3300006847 Bacteria 4044
53 Ga0075433_10020196 3300006852 Bacteria 5565
54 Ga0075434_100141110 3300006871 Bacteria 2429
55 Ga0075429_100353336 3300006880 Bacteria 1287
56 Ga0068865_100003278 3300006881 Bacteria 9689
57 Ga0068865_100004510 3300006881 Bacteria 8402
58 Ga0097620_100055347 3300006931 Bacteria 3992
59 Ga0075435_100134575 3300007076 Bacteria 2069
60 Ga0105240_10058720 3300009093 Bacteria 4802
61 Ga0111539_10007847 3300009094 Bacteria 13632
62 Ga0111539_10056869 3300009094 Bacteria 4648
63 Ga0111539_10390028 3300009094 Bacteria 1622
64 Ga0105245_10005100 3300009098 Bacteria 11549
65 Ga0114129_10176757 3300009147 Bacteria 2908
66 Ga0105243_10044301 3300009148 Bacteria 3491
67 Ga0105243_10085082 3300009148 Archaea 2591
68 Ga0105248_10017761 3300009177 Bacteria 7848
69 Ga0105237_10024294 3300009545 Bacteria 6201
70 Ga0105249_10018362 3300009553 Bacteria 6220
71 Ga0099796_10034666 3300010159 Unclassified 1669
72 Ga0105239_10008488 3300010375 Bacteria 11680
73 Ga0157378_10044470 3300013297 Bacteria 3944
74 Ga0163162_10147697 3300013306 Bacteria 2468
75 Ga0157372_10476555 3300013307 Bacteria 1455
76 Ga0157380_10185056 3300014326 Archaea 1834
77 Ga0157376_10336046 3300014969 Bacteria 1441
78 Ga0207682_10056624 3300025893 Bacteria 1633
79 Ga0207680_10155687 3300025903 Bacteria 1528
80 Ga0207643_10031826 3300025908 Bacteria 2942
81 Ga0207707_10008904 3300025912 Bacteria 8716
82 Ga0207693_10091661 3300025915 Bacteria 2383
83 Ga0207693_10190065 3300025915 Bacteria 1616
84 Ga0207662_10009857 3300025918 Archaea 5270
85 Ga0207652_10266881 3300025921 Bacteria 1544
86 Ga0207681_10000891 3300025923 Bacteria 19510
87 Ga0207681_10291085 3300025923 Unclassified 1289
88 Ga0207650_10036725 3300025925 Bacteria 3566
89 Ga0207659_10020631 3300025926 Bacteria 4359
90 Ga0207659_10301708 3300025926 Archaea 1316
91 Ga0207687_10005873 3300025927 Bacteria 8117
92 Ga0207706_10000241 3300025933 Bacteria 60341
93 Ga0207709_10025851 3300025935 Bacteria 3365
94 Ga0207709_10062055 3300025935 Archaea 2338
95 Ga0207704_10003634 3300025938 Bacteria 7003
96 Ga0207704_10006500 3300025938 Bacteria 5455
97 Ga0207691_10068504 3300025940 Bacteria 3206
98 Ga0207651_10221330 3300025960 Archaea 1530
99 Ga0207712_10041986 3300025961 Archaea 3147
100 Ga0207712_10082789 3300025961 Bacteria 2340
101 Ga0207668_10065874 3300025972 Bacteria 2565
102 Ga0207658_10007913 3300025986 Bacteria 7241
103 Ga0207678_10014202 3300026067 Bacteria 7001
104 Ga0207708_10001140 3300026075 Bacteria 19958
105 Ga0207708_10012120 3300026075 Bacteria 6428
106 Ga0207648_10001392 3300026089 Bacteria 26624
107 Ga0207648_10005717 3300026089 Bacteria 12458
108 Ga0207676_10075270 3300026095 Archaea 2723
109 Ga0207675_100004957 3300026118 Bacteria 12832
110 Ga0207675_100011611 3300026118 Bacteria 8235
111 Ga0207683_10002272 3300026121 Bacteria 16843
112 Ga0207698_10050012 3300026142 Bacteria 3186
113 Ga0207698_10400866 3300026142 Archaea 1311
114 Ga0207428_10015529 3300027907 Bacteria 6584
115 Ga0207428_10053663 3300027907 Bacteria 3213
116 Ga0207428_10057521 3300027907 Bacteria 3087
117 Ga0268265_10279181 3300028380 Bacteria 1494
118 Ga0268264_10025545 3300028381 Bacteria 4826
119 Ga0268264_10131231 3300028381 Archaea 2221
120 Ga0265337_1000707 3300028556 Bacteria 17564
121 Ga0265320_10000101 3300031240 Bacteria 73166
122 Ga0316575_10056598 3300031665 Unclassified 1562
123 Ga0265314_10007945 3300031711 Bacteria 9152
124 Ga0316576_10003755 3300031727 Bacteria 8968
125 Ga0316576_10076235 3300031727 Bacteria 2481
126 Ga0307405_10189792 3300031731 Bacteria 1483
127 Ga0307416_100062479 3300032002 Bacteria 3046
128 Ga0307415_100254339 3300032126 Bacteria 1429
129 Ga0373943_0050033 3300035170 Bacteria 2053
130 Ga0373943_0157613 3300035170 Unclassified 1234
131 Ga0316574_0102155 3300035398 Bacteria 1835
132 Ga0373931_0097835 3300035691 Bacteria 1646
133 Ga0373927_0022337 3300035695 Bacteria 4145
134 Ga0373925_0021405 3300037068 Bacteria 4711
135 Ga0395898_0284936 3300037466 Bacteria 1576
136 Ga0395905_0001853 3300037471 Bacteria 24358
137 Ga0395905_0284140 3300037471 Bacteria 1541
138 Ga0436364_1216541 3300037853 Bacteria 3109
139 Ga0436360_1037159 3300039438 Bacteria 5323
140 Ga0436361_0616304 3300039447 Bacteria 4398
141 Ga0436361_1180737 3300039447 Unclassified 1261
142 Ga0439432_016270 3300042006 Bacteria 2505
143 Ga0451577_0003423 3300042876 Bacteria 17680
144 Ga0451577_0013584 3300042876 Bacteria 7615
145 Ga0451577_0013856 3300042876 Bacteria 7531
146 Ga0451577_0034111 3300042876 Bacteria 4589
147 Ga0451577_0209837 3300042876 Bacteria 1759
148 Ga0451577_0355731 3300042876 Bacteria 1328
149 Ga0466963_0195007 3300044694 Bacteria 1416
150 Ga0453684_0000368 3300044712 Bacteria 185018
151 Ga0453684_0048326 3300044712 Bacteria 5629
152 Ga0466967_0018484 3300045976 Bacteria 5573
153 Ga0495608_0000989 3300046511 Bacteria 20058
154 Ga0495587_0154744 3300046536 Bacteria 1306
155 Ga0495667_0172018 3300046559 Unclassified 1392
156 Ga0495634_0045090 3300046642 Bacteria 2982
157 Ga0495669_0108345 3300046684 Bacteria 1295
158 Ga0495604_0027231 3300047317 Bacteria 4548
159 Ga0495636_0010819 3300047318 Bacteria 3607
160 Ga0495680_0127607 3300047322 Unclassified 1872
161 Ga0495675_0062707 3300047444 Bacteria 2353
162 Ga0495684_0080367 3300047471 Bacteria 2475
163 Ga0496109_0134089 3300048912 Unclassified 2313
164 Ga0496110_0014114 3300048913 Bacteria 6623
165 Ga0496115_0000002 3300048918 Bacteria 365286
166 Ga0496126_0000052 3300048929 Bacteria 312383
167 Ga0501073_0091846 3300049589 Bacteria 2110
168 Ga0501075_0286860 3300049591 Unclassified 1254
169 Ga0501257_009187 3300049686 Bacteria 2230
170 nmdc:mga05p37_81709_c1 3300050507 Unclassified 3981
171 nmdc:mga06r32_328223_c1 3300050510 Bacteria 1515
172 nmdc:mga08y16_22927_c1 3300050511 Bacteria 6590
173 nmdc:mga08y16_2483_c1 3300050511 Bacteria 10678
174 nmdc:mga08y16_2704_c1 3300050511 Bacteria 18199
175 nmdc:mga0n895_99662_c1 3300050512 Bacteria 2914
176 nmdc:mga0rr50_508447_c1 3300050513 Bacteria 1025
177 nmdc:mga0a205_36109_c1 3300050515 Bacteria 4748
178 Ga0495601_0000909 3300053077 Bacteria 16110
179 Ga0495601_0043524 3300053077 Bacteria 2820
180 Ga0495601_0081287 3300053077 Unclassified 2079
181 Ga0495595_0045600 3300053084 Bacteria 2017
182 Ga0495619_0164072 3300053085 Bacteria 1535
183 2508539723 2508501009 Bacteria 7784016
184 2644527995 2643221695 Bacteria 3441323
185 2791911836 2791354901 Bacteria 8322202
186 2881717192 2881714928 Bacteria 2469486
187 2913846417 2913844669 Bacteria 8381711
188 8054360300 8054357960 Bacteria 2867777
189 Ga0075431_100010439
190 JGI25404J52841_10001350
191 Ga0070676_10003527
192 Ga0068868_100024346
193 Ga0070689_100018060
194 Ga0070689_100054105
195 Ga0070687_100001445
196 Ga0070687_100133340
197 Ga0070668_100016565
198 Ga0070668_100300763
199 Ga0070669_100021076
200 Ga0070674_100000909
201 Ga0070674_100006770
202 Ga0070673_100035705
203 Ga0070701_10002691
204 Ga0070700_100006978
205 Ga0070700_100025534
206 Ga0070708_100077069
207 Ga0070663_100015954
208 Ga0070678_100014610
209 Ga0070662_100000427
210 Ga0070681_10230292
211 Ga0068867_100041519
212 Ga0070706_100022554
213 Ga0070699_100000085
214 Ga0070699_100110641
215 Ga0070684_100269975
216 Ga0068853_100142281
217 Ga0070672_100009789
218 Ga0070672_100031091
219 Ga0070672_100051397
220 Ga0070686_100000038
221 Ga0070686_100037946
222 Ga0070665_100232156
223 Ga0070665_100340618
224 Ga0070702_100038278
225 Ga0068859_100055344
226 Ga0068864_100122064
227 Ga0068864_100156404
228 Ga0068866_10051448
229 Ga0068861_100017664
230 Ga0068870_10066358
231 Ga0068870_10102644
232 Ga0068858_100033401
233 Ga0068860_100024586
234 Ga0068860_100045427
235 Ga0068862_100297772
236 Ga0081539_10010038
237 Ga0081539_10021903
238 Ga0097621_100251620
239 Ga0075428_100158730
240 Ga0075431_100056581
241 Ga0075433_10020196
242 Ga0075434_100141110
243 Ga0075429_100353336
244 Ga0068865_100003278
245 Ga0068865_100004510
246 Ga0097620_100055347
247 Ga0075435_100134575
248 Ga0105240_10058720
249 Ga0111539_10007847
250 Ga0111539_10056869
251 Ga0111539_10390028
252 Ga0105245_10005100
253 Ga0114129_10176757
254 Ga0105243_10044301
255 Ga0105243_10085082
256 Ga0105248_10017761
257 Ga0105237_10024294
258 Ga0105249_10018362
259 Ga0099796_10034666
260 Ga0105239_10008488
261 Ga0157378_10044470
262 Ga0163162_10147697
263 Ga0157372_10476555
264 Ga0157380_10185056
265 Ga0157376_10336046
266 Ga0207682_10056624
267 Ga0207680_10155687
268 Ga0207643_10031826
269 Ga0207707_10008904
270 Ga0207693_10091661
271 Ga0207693_10190065
272 Ga0207662_10009857
273 Ga0207652_10266881
274 Ga0207681_10000891
275 Ga0207681_10291085
276 Ga0207650_10036725
277 Ga0207659_10020631
278 Ga0207659_10301708
279 Ga0207687_10005873
280 Ga0207706_10000241
281 Ga0207709_10025851
282 Ga0207709_10062055
283 Ga0207704_10003634
284 Ga0207704_10006500
285 Ga0207691_10068504
286 Ga0207651_10221330
287 Ga0207712_10041986
288 Ga0207712_10082789
289 Ga0207668_10065874
290 Ga0207658_10007913
291 Ga0207678_10014202
292 Ga0207708_10001140
293 Ga0207708_10012120
294 Ga0207648_10001392
295 Ga0207648_10005717
296 Ga0207676_10075270
297 Ga0207675_100004957
298 Ga0207675_100011611
299 Ga0207683_10002272
300 Ga0207698_10050012
301 Ga0207698_10400866
302 Ga0207428_10015529
303 Ga0207428_10053663
304 Ga0207428_10057521
305 Ga0268265_10279181
306 Ga0268264_10025545
307 Ga0268264_10131231
308 Ga0265337_1000707
309 Ga0265320_10000101
310 Ga0316575_10056598
311 Ga0265314_10007945
312 Ga0316576_10003755
313 Ga0316576_10076235
314 Ga0307405_10189792
315 Ga0307416_100062479
316 Ga0307415_100254339
317 Ga0373943_0050033
318 Ga0373943_0157613
319 Ga0316574_0102155
320 Ga0373931_0097835
321 Ga0373927_0022337
322 Ga0373925_0021405
323 Ga0395898_0284936
324 Ga0395905_0001853
325 Ga0395905_0284140
326 Ga0436364_1216541
327 Ga0436360_1037159
328 Ga0436361_0616304
329 Ga0436361_1180737
330 Ga0439432_016270
331 Ga0451577_0003423
332 Ga0451577_0013584
333 Ga0451577_0013856
334 Ga0451577_0034111
335 Ga0451577_0209837
336 Ga0451577_0355731
337 Ga0466963_0195007
338 Ga0453684_0000368
339 Ga0453684_0048326
340 Ga0466967_0018484
341 Ga0495608_0000989
342 Ga0495587_0154744
343 Ga0495667_0172018
344 Ga0495634_0045090
345 Ga0495669_0108345
346 Ga0495604_0027231
347 Ga0495636_0010819
348 Ga0495680_0127607
349 Ga0495675_0062707
350 Ga0495684_0080367
351 Ga0496109_0134089
352 Ga0496110_0014114
353 Ga0496115_0000002
354 Ga0496126_0000052
355 Ga0501073_0091846
356 Ga0501075_0286860
357 Ga0501257_009187
358 nmdc:mga05p37_81709_c1
359 nmdc:mga06r32_328223_c1
360 nmdc:mga08y16_22927_c1
361 nmdc:mga08y16_2483_c1
362 nmdc:mga08y16_2704_c1
363 nmdc:mga0n895_99662_c1
364 nmdc:mga0rr50_508447_c1
365 nmdc:mga0a205_36109_c1
366 Ga0495601_0000909
367 Ga0495601_0043524
368 Ga0495601_0081287
369 Ga0495595_0045600
370 Ga0495619_0164072
371 2508539723
372 2644527995
373 2791911836
374 2881717192
375 2913846417
376 8054360300

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03435

Sacchrp_dh_NADP

Saccharopine dehydrogenase NADP binding domain

27

146

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ic5-assembly2.cif.gz_B n-terminal domain of putative saccharopine dehydrogenase from ruegeria pomeroyi. 0.8959 1 100
6kwt-assembly1.cif.gz_A crystal structure of gre2 in complex with nadph complex from candida albicans 0.849 4 101
7zp9-assembly1.cif.gz_L ktrab complex - ktra8 ring with a ktrb dimer on each side 0.8337 4 107
3svt-assembly1.cif.gz_B structure of a short-chain type dehydrogenase/reductase from mycobacterium ulcerans 0.8138 4 125
7xwu-assembly2.cif.gz_B ketoreductase cpkr mutant - m1 0.8135 4 102
ID Description Score Start End Superfamily
af_A4I3C3_4_163_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9255 4 135 3.40.50.720
af_Q9VG81_6_173_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9244 4 135 3.40.50.720
af_A0A0P0Y6T5_38_191_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9176 4 130 3.40.50.720
af_I1LWP4_7_171_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9149 2 125 3.40.50.720
af_Q5RHQ4_13_183_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9134 5 135 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A250BH59-F1-model_v4 deleted 0.98 4 121
AF-A0A6A9SZM7-F1-model_v4 NAD(P)H-binding protein 0.9786 4 350
AF-A0A3B0W4A8-F1-model_v4 Saccharopine dehydrogenase NADP binding domain-containing protein 0.9779 3 350
AF-A0A7T9CGN1-F1-model_v4 deleted 0.9771 1 350
AF-A0A4D6HGJ1-F1-model_v4 Saccharopine dehydrogenase 0.9766 3 350

Map