F290636

General Info

Members Datasets Scaffolds Average Seq Length
189 146 378 500

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100187033|Ga0068855_1001870332
Length 556
Sequence MNDKSLRRIVIVGGGTAGWMAAAPLALKLHRGDGPPCEVVLVESPDIGTIGVGEATLPTIRAYNRSLGLDGADFVRRTQGTFKLGIEFRDWGRIGHRFFHGFGDFGPAIENRPSFMHWLRLARAGRMPPYEEWSTATVMARANRFTPPQGEVPSAANGYSYAYHFDAGLYAAYLREHAIRHGAQRIEGTVVDVELRAADGFIEALRLKDGRRIEGDLFIDCSGFRGLLIEGALRAGYEDWSELLPCDSALAVPSARAAVLTPYTMSSARPAGWQWRIPLQHRTGNGHVYCSAFTSDAQAERLLLAGLDTPALGEPRPLRFTTGRRRKMWLRNCVALGLAAGFVEPLESTSIQLIMDGVGRLIENFPDRDFAPHLAAEYNRLIAAQYESVRDFIVLHYKLTERDDSPFWRHCAAMPIPDSLQHQIDLFRSSGRVAIFDRGGFLESSFISILYGLGVEPRAWDPFIDRMDERALRSHFARLRSAIAGTVAAMPDHADYIARHARAEPVAETMDYTAPPSAVERLPTTAGGDRAGQPSPSTHDRNIAESPSDLMLNRLD

Samples

Sample ID Description Type Environment
1 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
2 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
3 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
32 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
33 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
43 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
72 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
73 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
74 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
75 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
76 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
77 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
78 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
79 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
80 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
81 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
82 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
83 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
84 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
85 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
86 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
87 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
88 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
89 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
90 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
91 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
92 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
93 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
94 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
97 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
98 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
99 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
100 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
101 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
102 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
103 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
104 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
105 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
106 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
107 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
108 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
109 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
110 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
111 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
112 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
113 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
114 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
115 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
116 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
117 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
118 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
119 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
120 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
121 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
122 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
123 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
124 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
125 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
126 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
127 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
130 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
131 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
132 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
133 3300049764 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control Metagenome Rhizosphere
134 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
135 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
136 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
137 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
138 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
139 2643221585 Pelomonas sp. Root662 Isolate Unclassified
140 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
141 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
142 2643221656 Pelomonas sp. Root405 Isolate Unclassified
143 2738541337 Pelomonas sp. BT06 Isolate Unclassified
144 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
145 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
146 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 94.71
Metatranscriptomes 0
Isolates 5.29

Biome Distribution

Category Percentage (%)
Aerial Root 1.06
Bulb 0
Endosphere 6.35
Nodule 0
Rhizoplane 2.12
Rhizosphere 83.6
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068855_100187033 3300005563 Bacteria 2339
2 JGI24738J21930_10004383 3300002075 Bacteria 3464
3 Ga0055530_10000125 3300003791 Bacteria 66757
4 Ga0055531_10000019 3300003794 Bacteria 170825
5 Ga0055531_10000025 3300003794 Bacteria 161475
6 Ga0065165_1008798 3300005262 Bacteria 4651
7 Ga0070658_10030956 3300005327 Bacteria 4298
8 Ga0070666_10047002 3300005335 Bacteria 2896
9 Ga0070660_100010891 3300005339 Bacteria 6436
10 Ga0070661_100010482 3300005344 Bacteria 6449
11 Ga0070671_100145794 3300005355 Bacteria 1998
12 Ga0070659_100012354 3300005366 Bacteria 6329
13 Ga0070659_100047548 3300005366 Bacteria 3366
14 Ga0070667_100168467 3300005367 Bacteria 1932
15 Ga0070663_100047546 3300005455 Bacteria 3039
16 Ga0070662_100019237 3300005457 Bacteria 4634
17 Ga0070681_10012780 3300005458 Bacteria 8332
18 Ga0070679_100009569 3300005530 Bacteria 9165
19 Ga0070679_100018776 3300005530 Bacteria 6713
20 Ga0068853_100014460 3300005539 Bacteria 6463
21 Ga0068853_100079505 3300005539 Bacteria 2867
22 Ga0070665_100000123 3300005548 Bacteria 147463
23 Ga0070665_100009477 3300005548 Bacteria 9852
24 Ga0068855_100000131 3300005563 Bacteria 95330
25 Ga0068855_100035461 3300005563 Bacteria 5941
26 Ga0068855_100120650 3300005563 Bacteria 3001
27 Ga0070664_100080744 3300005564 Bacteria 2801
28 Ga0068857_100017882 3300005577 Bacteria 6217
29 Ga0068857_100069933 3300005577 Bacteria 3126
30 Ga0068852_100050928 3300005616 Bacteria 3551
31 Ga0068861_100003039 3300005719 Bacteria 11085
32 Ga0068863_100039084 3300005841 Bacteria 4516
33 Ga0068858_100000540 3300005842 Bacteria 39342
34 Ga0075434_100271913 3300006871 Bacteria 1714
35 Ga0105240_10013199 3300009093 Bacteria 11365
36 Ga0105240_10052395 3300009093 Bacteria 5131
37 Ga0105240_10305048 3300009093 Bacteria 1820
38 Ga0105240_10384063 3300009093 Bacteria 1585
39 Ga0105247_10030103 3300009101 Bacteria 3291
40 Ga0105241_10036457 3300009174 Bacteria 3701
41 Ga0105248_10028459 3300009177 Bacteria 6225
42 Ga0105237_10154340 3300009545 Bacteria 2293
43 Ga0105239_10002293 3300010375 Bacteria 24453
44 Ga0157373_10009104 3300013100 Bacteria 7344
45 Ga0157371_10007400 3300013102 Bacteria 8895
46 Ga0157371_10011295 3300013102 Bacteria 6896
47 Ga0157370_10073682 3300013104 Bacteria 3222
48 Ga0157369_10002621 3300013105 Bacteria 21503
49 Ga0157369_10005878 3300013105 Bacteria 14256
50 Ga0157369_10025504 3300013105 Bacteria 6563
51 Ga0157372_10034620 3300013307 Bacteria 5554
52 Ga0157375_10000114 3300013308 Bacteria 78070
53 Ga0157380_10248913 3300014326 Bacteria 1607
54 Ga0157376_10001091 3300014969 Bacteria 17789
55 Ga0213872_10000062 3300021361 Bacteria 99195
56 Ga0213872_10010616 3300021361 Bacteria 4377
57 Ga0213876_10040102 3300021384 Bacteria 2473
58 Ga0209759_1002963 3300025256 Bacteria 7075
59 Ga0209050_1000010 3300025298 Bacteria 980454
60 Ga0209050_1013127 3300025298 Bacteria 3715
61 Ga0209051_1005585 3300025303 Bacteria 7301
62 Ga0209257_1000009 3300025304 Bacteria 1205047
63 Ga0209257_1000032 3300025304 Bacteria 680354
64 Ga0207680_10025657 3300025903 Bacteria 3253
65 Ga0207705_10021578 3300025909 Bacteria 4596
66 Ga0207705_10032586 3300025909 Bacteria 3725
67 Ga0207707_10016851 3300025912 Bacteria 6365
68 Ga0207695_10029590 3300025913 Bacteria 6046
69 Ga0207695_10040280 3300025913 Bacteria 5012
70 Ga0207660_10022107 3300025917 Bacteria 4283
71 Ga0207657_10018541 3300025919 Bacteria 6638
72 Ga0207657_10040318 3300025919 Bacteria 4139
73 Ga0207649_10026853 3300025920 Bacteria 3372
74 Ga0207652_10067136 3300025921 Bacteria 3109
75 Ga0207690_10010439 3300025932 Bacteria 5520
76 Ga0207706_10004774 3300025933 Bacteria 12692
77 Ga0207709_10083032 3300025935 Bacteria 2070
78 Ga0207704_10032964 3300025938 Bacteria 2940
79 Ga0207667_10002830 3300025949 Bacteria 21534
80 Ga0207667_10023979 3300025949 Bacteria 6711
81 Ga0207658_10072334 3300025986 Bacteria 2613
82 Ga0207703_10011706 3300026035 Bacteria 6825
83 Ga0207639_10003036 3300026041 Bacteria 11300
84 Ga0207678_10035785 3300026067 Bacteria 4323
85 Ga0207678_10150586 3300026067 Bacteria 1986
86 Ga0207708_10045391 3300026075 Bacteria 3349
87 Ga0207702_10049854 3300026078 Bacteria 3534
88 Ga0207641_10000210 3300026088 Bacteria 75487
89 Ga0207674_10028565 3300026116 Bacteria 5885
90 Ga0207674_10051571 3300026116 Bacteria 4198
91 Ga0207674_10097559 3300026116 Bacteria 2923
92 Ga0207675_100010053 3300026118 Bacteria 8873
93 Ga0207698_10121833 3300026142 Bacteria 2209
94 Ga0268266_10000262 3300028379 Bacteria 88235
95 Ga0268266_10005264 3300028379 Bacteria 12149
96 Ga0268264_10000408 3300028381 Bacteria 60961
97 Ga0307408_100003212 3300031548 Bacteria 11243
98 Ga0307409_100010770 3300031995 Bacteria 5714
99 Ga0307411_10029244 3300032005 Bacteria 3361
100 Ga0307510_10000015 3300033180 Bacteria 258937
101 Ga0307510_10001600 3300033180 Bacteria 25045
102 Ga0373949_0002910 3300035090 Bacteria 4221
103 Ga0373936_0033889 3300035113 Bacteria 2026
104 Ga0373939_0001570 3300035114 Bacteria 5546
105 Ga0373960_0000136 3300035121 Bacteria 12100
106 Ga0395898_0008498 3300037466 Bacteria 10846
107 Ga0395898_0052814 3300037466 Bacteria 3970
108 Ga0395905_0012438 3300037471 Bacteria 8192
109 Ga0436365_0823003 3300039437 Bacteria 7631
110 Ga0436361_0016050 3300039447 Bacteria 5032
111 Ga0436361_0058114 3300039447 Bacteria 5042
112 Ga0436361_0174260 3300039447 Bacteria 101834
113 Ga0436361_0399221 3300039447 Bacteria 94069
114 Ga0436361_0766866 3300039447 Bacteria 6634
115 Ga0436361_0826107 3300039447 Bacteria 11997
116 Ga0436361_1062612 3300039447 Bacteria 3236
117 Ga0439436_0013252 3300041404 Bacteria 2496
118 Ga0439436_0017120 3300041404 Bacteria 2170
119 Ga0439439_0019190 3300041406 Bacteria 1695
120 Ga0439465_0001382 3300041413 Bacteria 7828
121 Ga0439431_0000458 3300041997 Bacteria 8613
122 Ga0439462_0000215 3300042015 Bacteria 10169
123 Ga0450890_000511 3300042127 Bacteria 5714
124 Ga0450891_000027 3300042129 Bacteria 10322
125 Ga0450892_000092 3300042130 Bacteria 9888
126 Ga0439434_0001335 3300042435 Bacteria 7105
127 Ga0450893_0003389 3300042532 Bacteria 2508
128 Ga0453684_0000159 3300044712 Bacteria 300297
129 Ga0466959_0103582 3300045049 Bacteria 2036
130 Ga0451576_0000120 3300045051 Bacteria 199365
131 Ga0451576_0092475 3300045051 Bacteria 3146
132 Ga0495590_0000088 3300046457 Bacteria 59069
133 Ga0495591_000327 3300046458 Bacteria 42998
134 Ga0495638_0000134 3300046460 Bacteria 119114
135 Ga0495650_0036913 3300046471 Bacteria 2133
136 Ga0495605_0015443 3300046474 Bacteria 4153
137 Ga0495584_0000051 3300046491 Bacteria 87120
138 Ga0495585_0024077 3300046492 Bacteria 3492
139 Ga0495596_0006400 3300046500 Bacteria 5421
140 Ga0495583_0000034 3300046506 Bacteria 246856
141 Ga0495583_0000335 3300046506 Bacteria 74014
142 Ga0495606_0000961 3300046507 Bacteria 42269
143 Ga0495610_0001772 3300046512 Bacteria 18875
144 Ga0495631_0010187 3300046518 Bacteria 4662
145 Ga0495637_0000018 3300046520 Bacteria 186671
146 Ga0495642_0003378 3300046528 Bacteria 6303
147 Ga0495668_0076448 3300046616 Bacteria 1838
148 Ga0495611_0000653 3300046648 Bacteria 19765
149 Ga0495625_0002127 3300046660 Bacteria 22081
150 Ga0495625_0039505 3300046660 Bacteria 3445
151 Ga0495661_0012957 3300046665 Bacteria 5615
152 Ga0495670_0003913 3300046691 Bacteria 7315
153 Ga0495649_0000052 3300046694 Bacteria 108087
154 Ga0495649_0000360 3300046694 Bacteria 39317
155 Ga0495589_0000985 3300046794 Bacteria 17336
156 Ga0495589_0001178 3300046794 Bacteria 15594
157 Ga0495660_0022875 3300046810 Bacteria 3566
158 Ga0495672_0000064 3300047320 Bacteria 195158
159 Ga0495683_0000579 3300047323 Bacteria 27666
160 Ga0495683_0027724 3300047323 Bacteria 2896
161 Ga0495677_0000165 3300047445 Bacteria 31757
162 Ga0495685_009071 3300047447 Bacteria 3315
163 Ga0495681_0019193 3300047470 Bacteria 3740
164 Ga0495686_0004874 3300047472 Bacteria 10822
165 Ga0495686_0044453 3300047472 Bacteria 2812
166 Ga0495626_0003748 3300048091 Bacteria 9575
167 Ga0496104_0000012 3300048907 Bacteria 438011
168 Ga0496105_0000011 3300048908 Bacteria 302186
169 Ga0496108_0269783 3300048911 Bacteria 1481
170 Ga0496114_0115523 3300048917 Bacteria 2303
171 Ga0496125_0001253 3300048928 Bacteria 37864
172 Ga0495678_000034 3300049459 Bacteria 207827
173 Ga0501227_001635 3300049665 Bacteria 4994
174 Ga0501229_000328 3300049706 Bacteria 5383
175 Ga0501267_000040 3300049764 Bacteria 7185
176 Ga0501044_0139782 3300049823 Bacteria 2411
177 Ga0500658_0003604 3300053134 Bacteria 5838
178 Ga0500604_0002943 3300053151 Bacteria 4596
179 Ga0500637_0004492 3300053178 Bacteria 6634
180 2643746084 2643221544 Bacteria 5886209
181 2643933857 2643221585 Bacteria 5812563
182 2644127060 2643221622 Bacteria 4212502
183 2644222664 2643221639 Bacteria 6649903
184 2644315052 2643221656 Bacteria 5809961
185 2644317025 2643221656 Bacteria 5809961
186 2739058070 2738541337 Bacteria 6183410
187 2896429338 2896429255 Bacteria 2557483
188 2990267961 2990265787 Bacteria 3943888
189 2993697021 2993693658 Bacteria 4040749
190 Ga0068855_100187033
191 JGI24738J21930_10004383
192 Ga0055530_10000125
193 Ga0055531_10000019
194 Ga0055531_10000025
195 Ga0065165_1008798
196 Ga0070658_10030956
197 Ga0070666_10047002
198 Ga0070660_100010891
199 Ga0070661_100010482
200 Ga0070671_100145794
201 Ga0070659_100012354
202 Ga0070659_100047548
203 Ga0070667_100168467
204 Ga0070663_100047546
205 Ga0070662_100019237
206 Ga0070681_10012780
207 Ga0070679_100009569
208 Ga0070679_100018776
209 Ga0068853_100014460
210 Ga0068853_100079505
211 Ga0070665_100000123
212 Ga0070665_100009477
213 Ga0068855_100000131
214 Ga0068855_100035461
215 Ga0068855_100120650
216 Ga0070664_100080744
217 Ga0068857_100017882
218 Ga0068857_100069933
219 Ga0068852_100050928
220 Ga0068861_100003039
221 Ga0068863_100039084
222 Ga0068858_100000540
223 Ga0075434_100271913
224 Ga0105240_10013199
225 Ga0105240_10052395
226 Ga0105240_10305048
227 Ga0105240_10384063
228 Ga0105247_10030103
229 Ga0105241_10036457
230 Ga0105248_10028459
231 Ga0105237_10154340
232 Ga0105239_10002293
233 Ga0157373_10009104
234 Ga0157371_10007400
235 Ga0157371_10011295
236 Ga0157370_10073682
237 Ga0157369_10002621
238 Ga0157369_10005878
239 Ga0157369_10025504
240 Ga0157372_10034620
241 Ga0157375_10000114
242 Ga0157380_10248913
243 Ga0157376_10001091
244 Ga0213872_10000062
245 Ga0213872_10010616
246 Ga0213876_10040102
247 Ga0209759_1002963
248 Ga0209050_1000010
249 Ga0209050_1013127
250 Ga0209051_1005585
251 Ga0209257_1000009
252 Ga0209257_1000032
253 Ga0207680_10025657
254 Ga0207705_10021578
255 Ga0207705_10032586
256 Ga0207707_10016851
257 Ga0207695_10029590
258 Ga0207695_10040280
259 Ga0207660_10022107
260 Ga0207657_10018541
261 Ga0207657_10040318
262 Ga0207649_10026853
263 Ga0207652_10067136
264 Ga0207690_10010439
265 Ga0207706_10004774
266 Ga0207709_10083032
267 Ga0207704_10032964
268 Ga0207667_10002830
269 Ga0207667_10023979
270 Ga0207658_10072334
271 Ga0207703_10011706
272 Ga0207639_10003036
273 Ga0207678_10035785
274 Ga0207678_10150586
275 Ga0207708_10045391
276 Ga0207702_10049854
277 Ga0207641_10000210
278 Ga0207674_10028565
279 Ga0207674_10051571
280 Ga0207674_10097559
281 Ga0207675_100010053
282 Ga0207698_10121833
283 Ga0268266_10000262
284 Ga0268266_10005264
285 Ga0268264_10000408
286 Ga0307408_100003212
287 Ga0307409_100010770
288 Ga0307411_10029244
289 Ga0307510_10000015
290 Ga0307510_10001600
291 Ga0373949_0002910
292 Ga0373936_0033889
293 Ga0373939_0001570
294 Ga0373960_0000136
295 Ga0395898_0008498
296 Ga0395898_0052814
297 Ga0395905_0012438
298 Ga0436365_0823003
299 Ga0436361_0016050
300 Ga0436361_0058114
301 Ga0436361_0174260
302 Ga0436361_0399221
303 Ga0436361_0766866
304 Ga0436361_0826107
305 Ga0436361_1062612
306 Ga0439436_0013252
307 Ga0439436_0017120
308 Ga0439439_0019190
309 Ga0439465_0001382
310 Ga0439431_0000458
311 Ga0439462_0000215
312 Ga0450890_000511
313 Ga0450891_000027
314 Ga0450892_000092
315 Ga0439434_0001335
316 Ga0450893_0003389
317 Ga0453684_0000159
318 Ga0466959_0103582
319 Ga0451576_0000120
320 Ga0451576_0092475
321 Ga0495590_0000088
322 Ga0495591_000327
323 Ga0495638_0000134
324 Ga0495650_0036913
325 Ga0495605_0015443
326 Ga0495584_0000051
327 Ga0495585_0024077
328 Ga0495596_0006400
329 Ga0495583_0000034
330 Ga0495583_0000335
331 Ga0495606_0000961
332 Ga0495610_0001772
333 Ga0495631_0010187
334 Ga0495637_0000018
335 Ga0495642_0003378
336 Ga0495668_0076448
337 Ga0495611_0000653
338 Ga0495625_0002127
339 Ga0495625_0039505
340 Ga0495661_0012957
341 Ga0495670_0003913
342 Ga0495649_0000052
343 Ga0495649_0000360
344 Ga0495589_0000985
345 Ga0495589_0001178
346 Ga0495660_0022875
347 Ga0495672_0000064
348 Ga0495683_0000579
349 Ga0495683_0027724
350 Ga0495677_0000165
351 Ga0495685_009071
352 Ga0495681_0019193
353 Ga0495686_0004874
354 Ga0495686_0044453
355 Ga0495626_0003748
356 Ga0496104_0000012
357 Ga0496105_0000011
358 Ga0496108_0269783
359 Ga0496114_0115523
360 Ga0496125_0001253
361 Ga0495678_000034
362 Ga0501227_001635
363 Ga0501229_000328
364 Ga0501267_000040
365 Ga0501044_0139782
366 Ga0500658_0003604
367 Ga0500604_0002943
368 Ga0500637_0004492
369 2643746084
370 2643933857
371 2644127060
372 2644222664
373 2644315052
374 2644317025
375 2739058070
376 2896429338
377 2990267961
378 2993697021

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04820

Trp_halogenase

Tryptophan halogenase

8

469

0.98

PF01266

DAO

FAD dependent oxidoreductase

8

331

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
6y1w-assembly1.cif.gz_B xcc4156, a flavin-dependent halogenase from xanthomonas campestris 0.9759 5 501
6frl-assembly1.cif.gz_A brvh, a flavin-dependent halogenase from brevundimonas sp. bal3 0.9725 5 498
6frl-assembly1.cif.gz_B brvh, a flavin-dependent halogenase from brevundimonas sp. bal3 0.971 6 499
6frl-assembly1.cif.gz_A brvh, a flavin-dependent halogenase from brevundimonas sp. bal3 0.9647 5 498
6y1w-assembly1.cif.gz_B xcc4156, a flavin-dependent halogenase from xanthomonas campestris 0.9623 5 501
ID Description Score Start End Superfamily
6frlA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9725 5 498 3.50.50.60
6frlA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9647 5 498 3.50.50.60
2jkcA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9224 3 499 3.50.50.60
2wetA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.922 6 499 3.50.50.60
2wetA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9167 6 499 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A7S1MV17-F1-model_v4 FAD dependent oxidoreductase domain-containing protein 0.991 183 354 GO:0004497
AF-A0A6G7YT50-F1-model_v4 Tryptophan 7-halogenase 0.9893 21 501 GO:0000166
GO:0004497
AF-A0A2K8MJK8-F1-model_v4 Tryptophan halogenase 0.9887 3 499 GO:0000166
GO:0004497
GO:0016020
AF-A0A396RV20-F1-model_v4 Tryptophan 7-halogenase 0.9886 3 499 GO:0000166
GO:0004497
GO:0016020
AF-A0A519L0N0-F1-model_v4 Tryptophan 7-halogenase 0.9884 179 497 GO:0004497

Map