F290771

General Info

Members Datasets Scaffolds Average Seq Length
189 159 378 470

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100082976|Ga0075431_1000829763
Length 517
Sequence VPVAAGFMPARFGFDRPSLWFFAPDSIIILVLTRMIGAEINMAVLKNYIGGEWVDGAETIRSINPSDTNEVVADCAVASAKQVADAVGAARQALKQWSQTTTQVRSDLLHKIGTELLERKDGLGECIAREEGKTRAEGIGEIIRAAQVFRFFAGEVVRFGGEKLPSVRPNIDIEVSRSPVGVIGIITPWNFPVAIPAWKIGPALAFGNTVVFKPSELTPMMGWHLAEIISRAGGPPGILNLVMGTGPTTGQAVVDNVDAVTFTGSVATGRQIAQRAIQRMIRLQCEMGGKNPLVVLDDADLDTAVACAVDGAFFQTGQRCTASSRLIVTEKIHDRFVDAVVERLRKLVIDNSLKPTTNVGPAVDQRQLDKDMRYLDVGLREGATVKLEGGLLKRDTPGHYISPTLFVDTTNQMQINREEIFGPIAATIRVKDYDEALAIANDTEYGLSAGICTTSRKYARHFQANAQSGLVMVNLPTAGLDYHVPFGGTKASSYGPREQGRYAEEFYTVVKTSYLSV

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
7 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
8 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
9 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
26 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
42 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
43 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
44 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
45 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
46 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
47 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
51 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
53 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
65 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
66 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
67 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
68 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
76 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
77 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
78 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
79 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
83 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
87 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
88 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
89 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
90 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
91 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
92 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
93 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
94 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
95 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
96 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
97 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
98 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
99 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
100 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
101 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
102 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
103 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
104 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
105 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
124 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
125 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
126 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
134 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
135 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
136 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
137 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
138 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
139 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
140 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
141 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
142 2643221596 Acidovorax sp. Root70 Isolate Unclassified
143 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
144 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
145 2889010040 Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 Isolate Nodule
146 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
147 2916048683 Sinorhizobium meliloti USDA1796 Isolate Nodule
148 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
149 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
150 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
151 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
152 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
153 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
154 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
155 2967742019 Sinorhizobium meliloti USDA1676 Isolate Nodule
156 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
157 8019638758 Bradyrhizobium sp. GM5.1 Isolate Nodule
158 8019648815 Bradyrhizobium sp. GM24.11 Isolate Nodule
159 8021120328 Burkholderia sp. LS-044 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.95
Metatranscriptomes 0
Isolates 10.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.7
Nodule 7.41
Rhizoplane 0.53
Rhizosphere 74.6
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100082976 3300006847 Bacteria 3308
2 JGI25152J39213_1001325 3300002773 Bacteria 10968
3 JGI25151J46595_10002013 3300003187 Bacteria 12719
4 JGI25165J46597_1000025 3300003214 Bacteria 333075
5 JGI25153J46596_10001798 3300003215 Bacteria 12719
6 JGI25160J50197_1000463 3300003354 Bacteria 25108
7 Ga0055536_1001094 3300003781 Bacteria 17041
8 Ga0055530_10002212 3300003791 Bacteria 12851
9 Ga0055540_1000833 3300003792 Bacteria 20742
10 Ga0055531_10001120 3300003794 Bacteria 20754
11 Ga0065165_1003222 3300005262 Bacteria 11881
12 Ga0065714_10064585 3300005288 Bacteria 31987
13 Ga0070668_100050553 3300005347 Bacteria 3201
14 Ga0070668_100062594 3300005347 Bacteria 2883
15 Ga0070669_100050414 3300005353 Bacteria 3040
16 Ga0070675_100035467 3300005354 Bacteria 4053
17 Ga0070667_100189983 3300005367 Bacteria 1819
18 Ga0070714_100167687 3300005435 Bacteria 1991
19 Ga0070679_100116388 3300005530 Bacteria 2658
20 Ga0068853_100083874 3300005539 Bacteria 2792
21 Ga0070672_100008934 3300005543 Bacteria 6886
22 Ga0070696_100039577 3300005546 Bacteria 3255
23 Ga0070665_100130315 3300005548 Bacteria 2517
24 Ga0068856_100061418 3300005614 Bacteria 3712
25 Ga0068860_100053805 3300005843 Bacteria 3827
26 Ga0068862_100006442 3300005844 Bacteria 9755
27 Ga0068862_100064242 3300005844 Bacteria 3159
28 Ga0081455_10003721 3300005937 Bacteria 17434
29 Ga0081455_10040073 3300005937 Bacteria 4134
30 Ga0070712_100051518 3300006175 Bacteria 2868
31 Ga0075367_10061662 3300006178 Bacteria 2238
32 Ga0075428_100008998 3300006844 Bacteria 11077
33 Ga0075431_100014503 3300006847 Bacteria 7972
34 Ga0075433_10064918 3300006852 Bacteria 3201
35 Ga0105240_10160576 3300009093 Bacteria 2670
36 Ga0111539_10001275 3300009094 Bacteria 33626
37 Ga0111539_10345476 3300009094 Bacteria 1732
38 Ga0114129_10008243 3300009147 Bacteria 14860
39 Ga0114129_10059405 3300009147 Bacteria 5346
40 Ga0114129_10077592 3300009147 Bacteria 4620
41 Ga0105241_10008408 3300009174 Bacteria 7593
42 Ga0105238_10019657 3300009551 Bacteria 6878
43 Ga0157373_10013911 3300013100 Bacteria 5901
44 Ga0157370_10058802 3300013104 Bacteria 3653
45 Ga0157374_10118009 3300013296 Bacteria 2558
46 Ga0163162_10054013 3300013306 Bacteria 4039
47 Ga0157375_10360835 3300013308 Bacteria 1619
48 Ga0157380_10031313 3300014326 Bacteria 4083
49 Ga0157380_10191910 3300014326 Bacteria 1804
50 Ga0182008_10003313 3300014497 Bacteria 9789
51 Ga0182008_10006043 3300014497 Bacteria 6810
52 Ga0182007_10003781 3300015262 Bacteria 7051
53 Ga0207425_1000910 3300025245 Bacteria 14190
54 Ga0209026_1000116 3300025250 Bacteria 133228
55 Ga0209129_1001408 3300025258 Bacteria 13464
56 Ga0209130_1001777 3300025284 Bacteria 12694
57 Ga0209676_1000004 3300025292 Bacteria 1138360
58 Ga0209025_1004413 3300025294 Bacteria 12242
59 Ga0209758_1003534 3300025297 Bacteria 14084
60 Ga0209050_1000002 3300025298 Bacteria 1792849
61 Ga0207426_1000379 3300025302 Bacteria 76587
62 Ga0207426_1002303 3300025302 Bacteria 12560
63 Ga0209051_1000002 3300025303 Bacteria 1631846
64 Ga0209257_1000002 3300025304 Bacteria 1767052
65 Ga0207691_10013304 3300025940 Bacteria 7882
66 Ga0207661_10155787 3300025944 Bacteria 1979
67 Ga0207668_10065823 3300025972 Bacteria 2566
68 Ga0207641_10064552 3300026088 Bacteria 3130
69 Ga0207428_10001927 3300027907 Bacteria 21011
70 Ga0268264_10044079 3300028381 Bacteria 3699
71 Ga0307515_10000047 3300028794 Bacteria 291475
72 Ga0307408_100021507 3300031548 Bacteria 4366
73 Ga0265314_10101112 3300031711 Bacteria 1853
74 Ga0307416_100085154 3300032002 Bacteria 2689
75 Ga0307414_10071932 3300032004 Bacteria 2497
76 Ga0307411_10018564 3300032005 Bacteria 3994
77 Ga0307411_10033796 3300032005 Bacteria 3175
78 Ga0307510_10001552 3300033180 Bacteria 25413
79 Ga0307510_10001899 3300033180 Bacteria 23467
80 Ga0373927_0076374 3300035695 Bacteria 2170
81 Ga0395899_0100977 3300037312 Bacteria 2083
82 Ga0395900_0000187 3300037418 Bacteria 100262
83 Ga0395898_0000366 3300037466 Bacteria 99100
84 Ga0395905_0001204 3300037471 Bacteria 32329
85 Ga0395905_0242844 3300037471 Bacteria 1683
86 Ga0395901_0000126 3300038443 Bacteria 98429
87 Ga0395901_0044824 3300038443 Bacteria 4587
88 Ga0436365_0449142 3300039437 Bacteria 5611
89 Ga0439448_0006835 3300042005 Bacteria 3290
90 Ga0439460_0000541 3300042461 Bacteria 8266
91 Ga0466969_0002805 3300044656 Bacteria 9308
92 Ga0466966_0001219 3300044684 Bacteria 16525
93 Ga0466961_0010857 3300044693 Bacteria 5816
94 Ga0466961_0125407 3300044693 Bacteria 1611
95 Ga0466963_0092218 3300044694 Bacteria 2064
96 Ga0453684_0130305 3300044712 Bacteria 3019
97 Ga0466971_0000976 3300044719 Bacteria 11761
98 Ga0466970_0000734 3300044765 Bacteria 15952
99 Ga0466970_0049515 3300044765 Bacteria 2241
100 Ga0466959_0000086 3300045049 Bacteria 59057
101 Ga0466958_0011125 3300045836 Bacteria 5061
102 Ga0495603_0067681 3300046455 Bacteria 2102
103 Ga0495651_0082059 3300046462 Bacteria 2433
104 Ga0495607_0001256 3300046501 Bacteria 22699
105 Ga0495583_0005347 3300046506 Bacteria 8753
106 Ga0495628_0081308 3300046516 Bacteria 2517
107 Ga0495632_0003077 3300046519 Bacteria 12111
108 Ga0495633_0002829 3300046558 Bacteria 11955
109 Ga0495656_0005197 3300046615 Bacteria 4489
110 Ga0495661_0001271 3300046665 Bacteria 21687
111 Ga0495669_0014809 3300046684 Bacteria 3336
112 Ga0495671_0048210 3300046692 Bacteria 2126
113 Ga0495676_0071345 3300047321 Bacteria 2670
114 Ga0495687_004817 3300047443 Bacteria 8893
115 Ga0495677_0003715 3300047445 Bacteria 5909
116 Ga0495686_0000281 3300047472 Bacteria 89475
117 Ga0495602_0175503 3300048088 Bacteria 1658
118 Ga0495626_0001074 3300048091 Bacteria 23269
119 Ga0496106_0088985 3300048909 Bacteria 2381
120 Ga0496126_0000425 3300048929 Bacteria 84939
121 Ga0501031_0022503 3300049568 Bacteria 4106
122 Ga0501032_0128969 3300049569 Bacteria 1669
123 Ga0501033_0001737 3300049570 Bacteria 19052
124 Ga0501034_0033544 3300049571 Bacteria 5207
125 Ga0501037_0037557 3300049573 Bacteria 3571
126 Ga0501037_0160814 3300049573 Bacteria 1601
127 Ga0501038_0002274 3300049574 Bacteria 17862
128 Ga0501038_0016765 3300049574 Bacteria 6635
129 Ga0501039_0003098 3300049575 Bacteria 12436
130 Ga0501040_0000894 3300049576 Bacteria 18728
131 Ga0501040_0042683 3300049576 Bacteria 3090
132 Ga0501041_0000990 3300049577 Bacteria 15522
133 Ga0501042_0000578 3300049578 Bacteria 19366
134 Ga0501042_0000825 3300049578 Bacteria 17197
135 Ga0501046_0000300 3300049580 Bacteria 49836
136 Ga0501046_0081391 3300049580 Bacteria 2501
137 Ga0501047_0024022 3300049581 Bacteria 5854
138 Ga0501047_0061151 3300049581 Bacteria 3634
139 Ga0501048_0027441 3300049582 Bacteria 4137
140 Ga0501068_0028654 3300049584 Bacteria 3295
141 Ga0501071_0112763 3300049587 Bacteria 2010
142 Ga0501072_0006596 3300049588 Bacteria 8839
143 Ga0501072_0010721 3300049588 Bacteria 6982
144 Ga0501073_0020101 3300049589 Bacteria 4816
145 Ga0501074_0002150 3300049590 Bacteria 13635
146 Ga0501075_0050560 3300049591 Bacteria 3124
147 Ga0501079_0007195 3300049741 Bacteria 8403
148 Ga0501081_0001630 3300049743 Bacteria 13882
149 Ga0501083_0013269 3300049744 Bacteria 5760
150 Ga0501035_0001956 3300049822 Bacteria 20626
151 Ga0501035_0004454 3300049822 Bacteria 13289
152 Ga0501044_0002895 3300049823 Bacteria 19547
153 Ga0501044_0011083 3300049823 Bacteria 9779
154 Ga0501045_0012085 3300049824 Bacteria 6074
155 Ga0501045_0140346 3300049824 Bacteria 1797
156 Ga0501045_0189411 3300049824 Bacteria 1533
157 nmdc:mga05p37_20672_c1 3300050507 Bacteria 7966
158 nmdc:mga05p37_22871_c1 3300050507 Bacteria 7581
159 nmdc:mga06r32_3611_c1 3300050510 Bacteria 13805
160 nmdc:mga08y16_884_c1 3300050511 Bacteria 28890
161 nmdc:mga0a205_13977_c1 3300050515 Bacteria 7487
162 Ga0500643_001601 3300053087 Bacteria 12760
163 Ga0500627_0000726 3300053158 Bacteria 8755
164 Ga0590074_002810 3300059423 Bacteria 2868
165 Ga0590075_002874 3300059424 Bacteria 4104
166 Ga0590077_000187 3300059426 Bacteria 17698
167 Ga0501082_0000498 3300060353 Bacteria 34785
168 Ga0530510_0009816 3300061734 Bacteria 6718
169 Ga0530510_0081797 3300061734 Bacteria 2352
170 Ga0530510_0135609 3300061734 Bacteria 1812
171 2523106065 2522572158 Bacteria 6514390
172 2643992006 2643221596 Bacteria 5006805
173 2644130361 2643221623 Bacteria 5239945
174 2831267543 2831265667 Bacteria 7184833
175 2889010532 2889010040 Bacteria 6749192
176 2916036765 2916035215 Bacteria 6755766
177 2916051963 2916048683 Bacteria 6543552
178 2921297133 2921296804 Bacteria 7176999
179 2924152555 2924150972 Bacteria 7169444
180 2935889605 2935883170 Bacteria 7964738
181 2957458985 2957457609 Bacteria 6967680
182 2957474123 2957471148 Bacteria 6797643
183 2957490040 2957484790 Bacteria 6703082
184 2964640644 2964636051 Bacteria 7091832
185 2967745401 2967742019 Bacteria 6794534
186 2977569236 2977565890 Bacteria 6901543
187 8019648728 8019638758 Bacteria 9062356
188 8019656274 8019648815 Bacteria 10014479
189 8021127621 8021120328 Bacteria 8782274
190 Ga0075431_100082976
191 JGI25152J39213_1001325
192 JGI25151J46595_10002013
193 JGI25165J46597_1000025
194 JGI25153J46596_10001798
195 JGI25160J50197_1000463
196 Ga0055536_1001094
197 Ga0055530_10002212
198 Ga0055540_1000833
199 Ga0055531_10001120
200 Ga0065165_1003222
201 Ga0065714_10064585
202 Ga0070668_100050553
203 Ga0070668_100062594
204 Ga0070669_100050414
205 Ga0070675_100035467
206 Ga0070667_100189983
207 Ga0070714_100167687
208 Ga0070679_100116388
209 Ga0068853_100083874
210 Ga0070672_100008934
211 Ga0070696_100039577
212 Ga0070665_100130315
213 Ga0068856_100061418
214 Ga0068860_100053805
215 Ga0068862_100006442
216 Ga0068862_100064242
217 Ga0081455_10003721
218 Ga0081455_10040073
219 Ga0070712_100051518
220 Ga0075367_10061662
221 Ga0075428_100008998
222 Ga0075431_100014503
223 Ga0075433_10064918
224 Ga0105240_10160576
225 Ga0111539_10001275
226 Ga0111539_10345476
227 Ga0114129_10008243
228 Ga0114129_10059405
229 Ga0114129_10077592
230 Ga0105241_10008408
231 Ga0105238_10019657
232 Ga0157373_10013911
233 Ga0157370_10058802
234 Ga0157374_10118009
235 Ga0163162_10054013
236 Ga0157375_10360835
237 Ga0157380_10031313
238 Ga0157380_10191910
239 Ga0182008_10003313
240 Ga0182008_10006043
241 Ga0182007_10003781
242 Ga0207425_1000910
243 Ga0209026_1000116
244 Ga0209129_1001408
245 Ga0209130_1001777
246 Ga0209676_1000004
247 Ga0209025_1004413
248 Ga0209758_1003534
249 Ga0209050_1000002
250 Ga0207426_1000379
251 Ga0207426_1002303
252 Ga0209051_1000002
253 Ga0209257_1000002
254 Ga0207691_10013304
255 Ga0207661_10155787
256 Ga0207668_10065823
257 Ga0207641_10064552
258 Ga0207428_10001927
259 Ga0268264_10044079
260 Ga0307515_10000047
261 Ga0307408_100021507
262 Ga0265314_10101112
263 Ga0307416_100085154
264 Ga0307414_10071932
265 Ga0307411_10018564
266 Ga0307411_10033796
267 Ga0307510_10001552
268 Ga0307510_10001899
269 Ga0373927_0076374
270 Ga0395899_0100977
271 Ga0395900_0000187
272 Ga0395898_0000366
273 Ga0395905_0001204
274 Ga0395905_0242844
275 Ga0395901_0000126
276 Ga0395901_0044824
277 Ga0436365_0449142
278 Ga0439448_0006835
279 Ga0439460_0000541
280 Ga0466969_0002805
281 Ga0466966_0001219
282 Ga0466961_0010857
283 Ga0466961_0125407
284 Ga0466963_0092218
285 Ga0453684_0130305
286 Ga0466971_0000976
287 Ga0466970_0000734
288 Ga0466970_0049515
289 Ga0466959_0000086
290 Ga0466958_0011125
291 Ga0495603_0067681
292 Ga0495651_0082059
293 Ga0495607_0001256
294 Ga0495583_0005347
295 Ga0495628_0081308
296 Ga0495632_0003077
297 Ga0495633_0002829
298 Ga0495656_0005197
299 Ga0495661_0001271
300 Ga0495669_0014809
301 Ga0495671_0048210
302 Ga0495676_0071345
303 Ga0495687_004817
304 Ga0495677_0003715
305 Ga0495686_0000281
306 Ga0495602_0175503
307 Ga0495626_0001074
308 Ga0496106_0088985
309 Ga0496126_0000425
310 Ga0501031_0022503
311 Ga0501032_0128969
312 Ga0501033_0001737
313 Ga0501034_0033544
314 Ga0501037_0037557
315 Ga0501037_0160814
316 Ga0501038_0002274
317 Ga0501038_0016765
318 Ga0501039_0003098
319 Ga0501040_0000894
320 Ga0501040_0042683
321 Ga0501041_0000990
322 Ga0501042_0000578
323 Ga0501042_0000825
324 Ga0501046_0000300
325 Ga0501046_0081391
326 Ga0501047_0024022
327 Ga0501047_0061151
328 Ga0501048_0027441
329 Ga0501068_0028654
330 Ga0501071_0112763
331 Ga0501072_0006596
332 Ga0501072_0010721
333 Ga0501073_0020101
334 Ga0501074_0002150
335 Ga0501075_0050560
336 Ga0501079_0007195
337 Ga0501081_0001630
338 Ga0501083_0013269
339 Ga0501035_0001956
340 Ga0501035_0004454
341 Ga0501044_0002895
342 Ga0501044_0011083
343 Ga0501045_0012085
344 Ga0501045_0140346
345 Ga0501045_0189411
346 nmdc:mga05p37_20672_c1
347 nmdc:mga05p37_22871_c1
348 nmdc:mga06r32_3611_c1
349 nmdc:mga08y16_884_c1
350 nmdc:mga0a205_13977_c1
351 Ga0500643_001601
352 Ga0500627_0000726
353 Ga0590074_002810
354 Ga0590075_002874
355 Ga0590077_000187
356 Ga0501082_0000498
357 Ga0530510_0009816
358 Ga0530510_0081797
359 Ga0530510_0135609
360 2523106065
361 2643992006
362 2644130361
363 2831267543
364 2889010532
365 2916036765
366 2916051963
367 2921297133
368 2924152555
369 2935889605
370 2957458985
371 2957474123
372 2957490040
373 2964640644
374 2967745401
375 2977569236
376 8019648728
377 8019656274
378 8021127621

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00171

Aldedh

Aldehyde dehydrogenase family

53

513

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ywv-assembly1.cif.gz_B structural insight into the substrate inhibition mechanism of nadp+-dependent succinic semialdehyde dehydrogenase from streptococcus pyogenes 0.9555 41 466
6rtu-assembly1.cif.gz_A-2 piperideine-6-carboxylate dehydrogenase from streptomyces clavuligerus complexed with alpha-aminoadipic acid 0.947 45 467
6rtr-assembly1.cif.gz_A piperideine-6-carboxylate dehydrogenase from streptomyces clavuligerus 0.9409 45 467
4q71-assembly1.cif.gz_B-2 crystal structure of bradyrhizobium japonicum proline utilization a (puta) mutant d779w 0.9386 46 467
6rtu-assembly1.cif.gz_B-2 piperideine-6-carboxylate dehydrogenase from streptomyces clavuligerus complexed with alpha-aminoadipic acid 0.9385 45 467
ID Description Score Start End Superfamily
af_A0A0G2KZR6_2_316_3.40.605.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 1;Aldehyde Dehydrogenase; Chain A, domain 1 0.9734 141 462 3.40.605.10
af_P40047_292_478_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9721 239 429 3.40.309.10
1uzbB02 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9707 237 431 3.40.309.10
af_P76149_240_424_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9704 241 429 3.40.309.10
af_A4IDE7_286_468_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9686 241 425 3.40.309.10
ID Description Score Start End GO Terms
AF-A0A5C6YQD4-F1-model_v4 Aldehyde dehydrogenase family protein 0.9856 71 427 GO:0016620
AF-A0A5C6YQD4-F1-model_v4 Aldehyde dehydrogenase family protein 0.9829 71 427 GO:0016620
AF-A0A2S8MQ35-F1-model_v4 deleted 0.9819 45 174
AF-S7SUG3-F1-model_v4 Aldehyde dehydrogenase (EC 1.2.1.3) 0.9775 94 468 GO:0004029
AF-A0A2Z5V886-F1-model_v4 Aldehyde dehydrogenase 1 family, member A2 0.9766 123 453 GO:0005737
GO:0006629
GO:0016620

Map